Rmu_ssc0000112.1_g000032

Cyclic nucleotide-gated ion channel 1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000112.1
Physical Location & Seq
Reverse (-)
152176 .. 157183
5008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000112.1_g000032.1.cds

Sequence Viewer

Length: 1572 bp
atgttggaagactgggtgagtgtagtcaatagatttgagtttggcaaacacaagaggagaattaagctggcggtggaaaagaagagtaaagagttagacttgtggttatttaaatctggtatccctagtagaagaaaaaatgagataatggaaagggtacggcaagaacttgaagaatatagggatgttgatgtcgagaatgtcctccctatccttcctgtggaacttcaaagttatatcaaaagttgtttgccaattactcggttaaagaaagtgccaatgcttagaagtgtcgatgaagaagtgttgagagcaatatgcgaacatatgaaacccatcaagtatacaaatattcgtgggagggtatatcattctcgcgatggggaaccacttgaaaagatgatattcattgttgagggggatctaggtgttgaaagaagaaactctgctactcgggatcttctatatgaaggagacttctatggagaggaacttgtacattgggtatcagtatcacatacatcttttcctgccagattacccttatcagtcgattctgcttatgtcaccaacaatgatagcatccttattctcatggctgacgacttgaagagtgtagtatccaagttcaggttgcacttcagcaaggagataacccttcgacctgacgagccagagcttctgagatctgttcagttgactatgctaaagaaagtgcctcggtttcaaactatggacgaagaaatgttgaaagcaatctgtgcgcatctgaagcctataacctatactgatgggacgtatatcatcaaaaaggatgaaccactccgactgatgttctttgtcctagccggatatgtagtcaccgaaagttatcctcacgctgttgttcgtgtaggagaattctgtggacaagaacttcttgaatgggcatcaactatctcctttcctgccaaatcacccacagcactcgagtctgctagggccaatggtgatgttagagtccttgccctcacgtttgacgattggtttagtgtaccccgcccccacgacaaccagctcacctacaccggtggcgagactaagatcctcgccgtcaaacgcaccatcaagttccccgccctcgtccccagggtctccgcgctctccgacagctacgtgtcgttcaagtaccagctccccgaggaagacctcgactccttgatctccgtcaccaactcgactcagctcgtcttcaacctcactgaacagtaccaggacctgactaacgccctccagaacctccagaacctcgacttcgacggcaagatgacacaggcaaacgacaagctcacactcgacaacgatggcaacctccgcatttacagcttcgatcggagtattgcggactggacagttgtctggcgactccagggaggggctgcagtggtggtggtggcgactgcagtgggagcggcgacggagttcctggattggtggtggcggtggatgcagtcggagtcccgtcaccggttgccggagtcgggtcaccagtcgccggagtccgccactggagtcaagcaaggtctccaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

523

Amino Acids

60.0

Weight (kDa)

5.97

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 765
AccBSI CCGCTC 1 cut(s) 1451
AccI GTMKAC 1 cut(s) 344
AccII CGCG 2 cut(s) 378, 1139
AciI CCGC 9 cut(s) 71, 1039, 1116, 1137, 1354, 1382, 1451, 1480, 1542
AclWI GGATC 3 cut(s) 429, 465, 1078
AcsI RAATTY 1 cut(s) 899
AcuI CTGAAG 2 cut(s) 625, 791
AfaI GTAC 5 cut(s) 159, 498, 1035, 1169, 1250
AfiI CCNNNNNNNGG 7 cut(s) 220, 630, 1414, 1506, 1513, 1520, 1534
AflIII ACRYGT 1 cut(s) 1155
AgeI ACCGGT 2 cut(s) 1067, 1506
AjnI CCWGG 4 cut(s) 1127, 1251, 1407, 1464
AluBI AGCT 8 cut(s) 67, 679, 1057, 1152, 1174, 1225, 1327, 1365
AluI AGCT 8 cut(s) 67, 679, 1057, 1152, 1174, 1225, 1327, 1365
Alw26I GTCTC 4 cut(s) 468, 1070, 1138, 1568
AlwI GGATC 3 cut(s) 429, 465, 1078
AlwNI CAGNNNCTG 1 cut(s) 1258
Ama87I CYCGRG 3 cut(s) 453, 968, 1178
AoxI GGCC 1 cut(s) 981
ApeKI GCWGC 1 cut(s) 1418
ApoI RAATTY 1 cut(s) 899
AsiGI ACCGGT 2 cut(s) 1067, 1506
AspLEI GCGC 2 cut(s) 766, 1141
AspS9I GGNCC 2 cut(s) 981, 1255
AsuHPI GGTGA 9 cut(s) 28, 559, 853, 948, 1001, 1051, 1201, 1496, 1517
AvaI CYCGRG 3 cut(s) 453, 968, 1178
AvaII GGWCC 1 cut(s) 1255
BbsI GAAGAC 3 cut(s) 15, 1191, 1222
BbvI GCAGC 1 cut(s) 1405
BccI CCATC 5 cut(s) 344, 374, 785, 1112, 1337
BceAI ACGGC 3 cut(s) 176, 1076, 1315
BciT130I CCWGG 4 cut(s) 1129, 1253, 1409, 1466
BciVI GTATCC 2 cut(s) 131, 631
BcoDI GTCTC 4 cut(s) 468, 1070, 1138, 1568
BfaI CTAG 4 cut(s) 126, 425, 845, 978
BfmI CTRYAG 2 cut(s) 1419, 1440
BfuI GTATCC 2 cut(s) 131, 631
BglII AGATCT 1 cut(s) 686
BisI GCNGC 2 cut(s) 1419, 1452
BlsI GCNGC 2 cut(s) 1420, 1453
Bme1390I CCNGG 4 cut(s) 1129, 1253, 1409, 1466
Bme18I GGWCC 1 cut(s) 1255
BmeT110I CYCGRG 3 cut(s) 453, 968, 1178
BmgT120I GGNCC 2 cut(s) 981, 1255
BmiI GGNNCC 1 cut(s) 387
BmrFI CCNGG 4 cut(s) 1129, 1253, 1409, 1466
BmrI ACTGGG 1 cut(s) 22
BmsI GCATC 4 cut(s) 591, 775, 938, 1476
BmuI ACTGGG 1 cut(s) 22
BoxI GACNNNNGTC 1 cut(s) 1394
BpiI GAAGAC 3 cut(s) 15, 1191, 1222
BpmI CTGGAG 4 cut(s) 1256, 1265, 1391, 1569
BsaAI YACGTR 1 cut(s) 1156
BsaI GGTCTC 2 cut(s) 1138, 1568
BsaJI CCNNGG 5 cut(s) 719, 1127, 1128, 1179, 1408
BsaWI WCCGGW 2 cut(s) 1067, 1506
BsaXI ACNNNNNCTCC 2 cut(s) 1178, 1208
Bsc4I CCNNNNNNNGG 7 cut(s) 220, 630, 1414, 1506, 1513, 1520, 1534
Bse118I RCCGGY 2 cut(s) 1067, 1506
Bse1I ACTGG 4 cut(s) 17, 1391, 1528, 1552
BseBI CCWGG 4 cut(s) 1129, 1253, 1409, 1466
BseDI CCNNGG 5 cut(s) 719, 1127, 1128, 1179, 1408
BseGI GGATG 4 cut(s) 190, 582, 820, 1491
BseLI CCNNNNNNNGG 7 cut(s) 220, 630, 1414, 1506, 1513, 1520, 1534
BseMII CTCAG 2 cut(s) 674, 1235
BseNI ACTGG 4 cut(s) 17, 1391, 1528, 1552
BseRI GAGGAG 1 cut(s) 70
BseXI GCAGC 1 cut(s) 1405
Bsh1236I CGCG 2 cut(s) 378, 1139
Bsh1285I CGRYCG 1 cut(s) 1372
BshFI GGCC 1 cut(s) 983
BshTI ACCGGT 2 cut(s) 1067, 1506
BsiEI CGRYCG 1 cut(s) 1372
BsiHKCI CYCGRG 3 cut(s) 453, 968, 1178
BsiSI CCGG 5 cut(s) 849, 1068, 1507, 1514, 1535
BslFI GGGAC 3 cut(s) 808, 1109, 1483
BslI CCNNNNNNNGG 7 cut(s) 220, 630, 1414, 1506, 1513, 1520, 1534
BsmAI GTCTC 4 cut(s) 468, 1070, 1138, 1568
BsmFI GGGAC 3 cut(s) 808, 1109, 1483
BsnI GGCC 1 cut(s) 983
Bso31I GGTCTC 2 cut(s) 1138, 1568
BsoBI CYCGRG 3 cut(s) 453, 968, 1178
Bsp1407I TGTACA 1 cut(s) 496
Bsp143I GATC 6 cut(s) 421, 457, 686, 1083, 1200, 1369
Bsp68I TCGCGA 1 cut(s) 378
BspACI CCGC 9 cut(s) 71, 1039, 1116, 1137, 1354, 1382, 1451, 1480, 1542
BspANI GGCC 1 cut(s) 983
BspCNI CTCAG 2 cut(s) 675, 1234
BspFNI CGCG 2 cut(s) 378, 1139
BspLI GGNNCC 1 cut(s) 387
BspMAI CTGCAG 2 cut(s) 1423, 1444
BspPI GGATC 3 cut(s) 429, 465, 1078
BspTNI GGTCTC 2 cut(s) 1138, 1568
BsrBI CCGCTC 1 cut(s) 1451
BsrFI RCCGGY 2 cut(s) 1067, 1506
BsrGI TGTACA 1 cut(s) 496
BsrI ACTGG 4 cut(s) 17, 1391, 1528, 1552
BssAI RCCGGY 2 cut(s) 1067, 1506
BssECI CCNNGG 5 cut(s) 719, 1127, 1128, 1179, 1408
BssMI GATC 6 cut(s) 421, 457, 686, 1083, 1200, 1369
BssNAI GTATAC 1 cut(s) 345
Bst1107I GTATAC 1 cut(s) 345
Bst2UI CCWGG 4 cut(s) 1129, 1253, 1409, 1466
Bst4CI ACNGT 2 cut(s) 1248, 1393
Bst6I CTCTTC 2 cut(s) 77, 605
BstAPI GCANNNNNTGC 1 cut(s) 761
BstAUI TGTACA 1 cut(s) 496
BstBAI YACGTR 1 cut(s) 1156
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 4 cut(s) 284, 683, 1080, 1221
BstEII GGTNACC 1 cut(s) 1523
BstF5I GGATG 4 cut(s) 190, 582, 820, 1491
BstFNI CGCG 2 cut(s) 378, 1139
BstHHI GCGC 2 cut(s) 766, 1141
BstKTI GATC 6 cut(s) 424, 460, 689, 1086, 1203, 1372
BstMAI GTCTC 4 cut(s) 468, 1070, 1138, 1568
BstMBI GATC 6 cut(s) 421, 457, 686, 1083, 1200, 1369
BstMCI CGRYCG 1 cut(s) 1372
BstMWI GCNNNNNNNGC 6 cut(s) 761, 772, 1353, 1362, 1448, 1486
BstNI CCWGG 4 cut(s) 1129, 1253, 1409, 1466
BstPAI GACNNNNGTC 1 cut(s) 1394
BstPI GGTNACC 1 cut(s) 1523
BstSCI CCNGG 4 cut(s) 1127, 1251, 1407, 1464
BstSFI CTRYAG 2 cut(s) 1419, 1440
BstUI CGCG 2 cut(s) 378, 1139
BstV1I GCAGC 1 cut(s) 1405
BstV2I GAAGAC 3 cut(s) 15, 1191, 1222
BstX2I RGATCY 4 cut(s) 421, 457, 686, 1083
BstYI RGATCY 4 cut(s) 421, 457, 686, 1083
BstZ17I GTATAC 1 cut(s) 345
BsuI GTATCC 2 cut(s) 131, 631
BsuRI GGCC 1 cut(s) 983
BtgZI GCGATG 1 cut(s) 393
BtsCI GGATG 4 cut(s) 190, 582, 820, 1491
BtsI GCAGTG 2 cut(s) 1428, 1449
BtsIMutI CAGTG 4 cut(s) 1239, 1428, 1449, 1545
BtuMI TCGCGA 1 cut(s) 378
Cac8I GCNNGC 1 cut(s) 69
CaiI CAGNNNCTG 1 cut(s) 1258
CfoI GCGC 2 cut(s) 766, 1141
Cfr10I RCCGGY 2 cut(s) 1067, 1506
Cfr13I GGNCC 2 cut(s) 981, 1255
Csp6I GTAC 5 cut(s) 158, 497, 1034, 1168, 1249
CspAI ACCGGT 2 cut(s) 1067, 1506
CviAII CATG 1 cut(s) 595
CviQI GTAC 5 cut(s) 158, 497, 1034, 1168, 1249
DdeI CTNAG 4 cut(s) 284, 683, 1080, 1221
DpnI GATC 6 cut(s) 423, 459, 688, 1085, 1202, 1371
DpnII GATC 6 cut(s) 421, 457, 686, 1083, 1200, 1369
DraI TTTAAA 1 cut(s) 112
Eam1104I CTCTTC 2 cut(s) 77, 605
EarI CTCTTC 2 cut(s) 77, 605
EciI GGCGGA 1 cut(s) 1531
Eco31I GGTCTC 2 cut(s) 1138, 1568
Eco47I GGWCC 1 cut(s) 1255
Eco57I CTGAAG 2 cut(s) 625, 791
Eco88I CYCGRG 3 cut(s) 453, 968, 1178
Eco91I GGTNACC 1 cut(s) 1523
EcoO109I RGGNCCY 1 cut(s) 1255
EcoO65I GGTNACC 1 cut(s) 1523
EcoRI GAATTC 1 cut(s) 899
EcoRII CCWGG 4 cut(s) 1127, 1251, 1407, 1464
FaeI CATG 1 cut(s) 598
FalI AAGNNNNNCTT 2 cut(s) 903, 935
FaqI GGGAC 3 cut(s) 808, 1109, 1483
FatI CATG 1 cut(s) 594
FauI CCCGC 2 cut(s) 1046, 1123
FauNDI CATATG 1 cut(s) 327
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 2 cut(s) 1419, 1452
FokI GGATG 4 cut(s) 197, 569, 827, 1498
Fsp4HI GCNGC 2 cut(s) 1419, 1452
FspAI RTGCGCAY 1 cut(s) 765
FspBI CTAG 4 cut(s) 126, 425, 845, 978
FspI TGCGCA 1 cut(s) 765
GlaI GCGC 2 cut(s) 765, 1140
GluI GCNGC 2 cut(s) 1419, 1452
GsuI CTGGAG 4 cut(s) 1256, 1265, 1391, 1569
HaeIII GGCC 1 cut(s) 983
HapII CCGG 5 cut(s) 849, 1068, 1507, 1514, 1535
HhaI GCGC 2 cut(s) 766, 1141
Hin1II CATG 1 cut(s) 598
Hin6I GCGC 2 cut(s) 764, 1139
HinP1I GCGC 2 cut(s) 764, 1139
HincII GTYRAC 1 cut(s) 699
HindII GTYRAC 1 cut(s) 699
HpaII CCGG 5 cut(s) 849, 1068, 1507, 1514, 1535
HphI GGTGA 9 cut(s) 28, 559, 853, 948, 1001, 1051, 1201, 1496, 1517
Hpy166II GTNNAC 4 cut(s) 345, 699, 908, 1034
Hpy188I TCNGA 6 cut(s) 684, 771, 827, 1147, 1374, 1495
Hpy188III TCNNGA 6 cut(s) 196, 377, 455, 920, 1273, 1282
Hpy8I GTNNAC 4 cut(s) 345, 699, 908, 1034
Hpy99I CGWCG 2 cut(s) 1301, 1459
HpyAV CCTTC 3 cut(s) 224, 464, 668
HpyCH4III ACNGT 2 cut(s) 1248, 1393
HpyCH4IV ACGT 3 cut(s) 797, 1013, 1155
HpyCH4V TGCA 4 cut(s) 637, 1421, 1442, 1489
HpyF10VI GCNNNNNNNGC 6 cut(s) 761, 772, 1353, 1362, 1448, 1486
HpyF3I CTNAG 4 cut(s) 284, 683, 1080, 1221
HpySE526I ACGT 3 cut(s) 797, 1013, 1155
Hsp92II CATG 1 cut(s) 598
HspAI GCGC 2 cut(s) 764, 1139
Kzo9I GATC 6 cut(s) 421, 457, 686, 1083, 1200, 1369
LmnI GCTCC 2 cut(s) 1179, 1448
Lsp1109I GCAGC 1 cut(s) 1405
LweI GCATC 4 cut(s) 591, 775, 938, 1476
MaeI CTAG 4 cut(s) 126, 425, 845, 978
MaeII ACGT 3 cut(s) 797, 1013, 1155
MaeIII GTNAC 5 cut(s) 565, 859, 1207, 1502, 1523
MalI GATC 6 cut(s) 423, 459, 688, 1085, 1202, 1371
MbiI CCGCTC 1 cut(s) 1451
MboI GATC 6 cut(s) 421, 457, 686, 1083, 1200, 1369
MflI RGATCY 4 cut(s) 421, 457, 686, 1083
MluCI AATT 3 cut(s) 60, 255, 899
MlyI GAGTC 9 cut(s) 980, 1008, 1187, 1213, 1398, 1505, 1526, 1547, 1560
MmeI TCCRAC 3 cut(s) 850, 1170, 1473
MseI TTAA 3 cut(s) 63, 111, 266
MspI CCGG 5 cut(s) 849, 1068, 1507, 1514, 1535
MspR9I CCNGG 4 cut(s) 1129, 1253, 1409, 1466
MvaI CCWGG 4 cut(s) 1129, 1253, 1409, 1466
MvnI CGCG 2 cut(s) 378, 1139
MwoI GCNNNNNNNGC 6 cut(s) 761, 772, 1353, 1362, 1448, 1486
NdeI CATATG 1 cut(s) 327
NdeII GATC 6 cut(s) 421, 457, 686, 1083, 1200, 1369
NlaIII CATG 1 cut(s) 598
NlaIV GGNNCC 1 cut(s) 387
NmuCI GTSAC 5 cut(s) 565, 859, 1207, 1502, 1523
NruI TCGCGA 1 cut(s) 378
NsbI TGCGCA 1 cut(s) 765
PaeR7I CTCGAG 1 cut(s) 968
PasI CCCWGGG 1 cut(s) 1128
PfeI GAWTC 1 cut(s) 554
PfoI TCCNGGA 1 cut(s) 1464
PinAI ACCGGT 2 cut(s) 1067, 1506
PkrI GCNGC 2 cut(s) 1420, 1453
Ple19I CGATCG 1 cut(s) 1372
PleI GAGTC 9 cut(s) 979, 1007, 1187, 1213, 1398, 1504, 1525, 1546, 1559
PpsI GAGTC 9 cut(s) 979, 1007, 1187, 1213, 1398, 1504, 1525, 1546, 1559
Ppu21I YACGTR 1 cut(s) 1156
PpuMI RGGWCCY 1 cut(s) 1255
PshAI GACNNNNGTC 1 cut(s) 1394
Psp5II RGGWCCY 1 cut(s) 1255
Psp6I CCWGG 4 cut(s) 1127, 1251, 1407, 1464
PspEI GGTNACC 1 cut(s) 1523
PspGI CCWGG 4 cut(s) 1127, 1251, 1407, 1464
PspN4I GGNNCC 1 cut(s) 387
PspPI GGNCC 2 cut(s) 981, 1255
PspPPI RGGWCCY 1 cut(s) 1255
PspXI VCTCGAGB 1 cut(s) 968
PstI CTGCAG 2 cut(s) 1423, 1444
PstNI CAGNNNCTG 1 cut(s) 1258
PsuI RGATCY 4 cut(s) 421, 457, 686, 1083
PvuI CGATCG 1 cut(s) 1372
RruI TCGCGA 1 cut(s) 378
RsaI GTAC 5 cut(s) 159, 498, 1035, 1169, 1250
RsaNI GTAC 5 cut(s) 158, 497, 1034, 1168, 1249
SaqAI TTAA 3 cut(s) 63, 111, 266
SatI GCNGC 2 cut(s) 1419, 1452
Sau3AI GATC 6 cut(s) 421, 457, 686, 1083, 1200, 1369
Sau96I GGNCC 2 cut(s) 981, 1255
SchI GAGTC 9 cut(s) 980, 1008, 1187, 1213, 1398, 1505, 1526, 1547, 1560
ScrFI CCNGG 4 cut(s) 1129, 1253, 1409, 1466
SfaNI GCATC 4 cut(s) 591, 775, 938, 1476
SfcI CTRYAG 2 cut(s) 1419, 1440
Sfr274I CTCGAG 1 cut(s) 968
SgrAI CRCCGGYG 1 cut(s) 1067
SinI GGWCC 1 cut(s) 1255
SlaI CTCGAG 1 cut(s) 968
SmiI ATTTAAAT 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 968
SmoI CTYRAG 1 cut(s) 968
Sse9I AATT 3 cut(s) 60, 255, 899
SsiI CCGC 9 cut(s) 71, 1039, 1116, 1137, 1354, 1382, 1451, 1480, 1542
SspI AATATT 1 cut(s) 352
SspMI CTAG 4 cut(s) 126, 425, 845, 978
StyD4I CCNGG 4 cut(s) 1127, 1251, 1407, 1464
SwaI ATTTAAAT 1 cut(s) 112
TaaI ACNGT 2 cut(s) 1248, 1393
TaiI ACGT 3 cut(s) 800, 1016, 1158
TasI AATT 3 cut(s) 60, 255, 899
TatI WGTACW 1 cut(s) 496
TauI GCSGC 1 cut(s) 1454
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 3 cut(s) 63, 111, 266
Tru9I TTAA 3 cut(s) 63, 111, 266
TscAI CASTG 4 cut(s) 1246, 1428, 1449, 1552
TseFI GTSAC 5 cut(s) 565, 859, 1207, 1502, 1523
TseI GCWGC 1 cut(s) 1418
Tsp45I GTSAC 5 cut(s) 565, 859, 1207, 1502, 1523
TspDTI ATGAA 5 cut(s) 312, 344, 397, 483, 831
TspGWI ACGGA 2 cut(s) 1195, 1472
TspRI CASTG 4 cut(s) 1246, 1428, 1449, 1552
VpaK11BI GGWCC 1 cut(s) 1255
XapI RAATTY 1 cut(s) 899
XhoI CTCGAG 1 cut(s) 968
XmiI GTMKAC 1 cut(s) 344
XspI CTAG 4 cut(s) 126, 425, 845, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.