Cyclic nucleotide-gated ion channel 1-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G55070 AT3G55070 |
| fragaria_vesca | FvH4_7g20680 FvH4_7g20680 FvH4_7g20680 |
| malus_domestica | MD01G1115200.v1.1 MD01G1115600.v1.1 MD07G1183500.v1.1 |
| prunus_persica | Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 |
| pyrus_communis | pycom01g14420 pycom07g17610 |
| rosa_chinensis | RchiOBHm_Chr1g0364711 RchiOBHm_Chr1g0364821 RchiOBHm_Chr1g0364831 |
| rosa_laevigata | RLG00000027464 |
| rosa_multiflora | Rmu_co8292327.1_g000001 Rmu_sc0028465.1_g000001 Rmu_sc0028466.1_g000001 Rmu_ssc0000112.1_g000032 |
| rosa_roxburghii | Rroxscaffold_4G00291710 Rroxscaffold_4G00291720 Rroxscaffold_4G00292120 Rroxscaffold_4G00292130 Rroxscaffold_4G00292150 |
| rosa_rugosa | Rorug01G0318300 Rorug01G0318500 |
| rosa_samantha | Rh1AG327100 Rh1BG288200 Rh1BG288300 Rh1CG304900 Rh1CG305000 Rh1DG319900 |
| rosa_wichuraiana | Rw1G028970 Rw1G028980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 213 |
| AcoI | YGGCCR | 3 cut(s) | 206, 360, 426 |
| AcsI | RAATTY | 4 cut(s) | 179, 233, 479, 623 |
| AcuI | CTGAAG | 2 cut(s) | 71, 89 |
| AfaI | GTAC | 1 cut(s) | 421 |
| AgsI | TTSAA | 2 cut(s) | 8, 503 |
| AjiI | CACGTC | 1 cut(s) | 594 |
| AluBI | AGCT | 2 cut(s) | 11, 358 |
| AluI | AGCT | 2 cut(s) | 11, 358 |
| Alw26I | GTCTC | 1 cut(s) | 391 |
| Ama87I | CYCGRG | 2 cut(s) | 248, 548 |
| AoxI | GGCC | 5 cut(s) | 206, 261, 360, 426, 561 |
| ApoI | RAATTY | 4 cut(s) | 179, 233, 479, 623 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 102 |
| AspS9I | GGNCC | 2 cut(s) | 261, 561 |
| AsuHPI | GGTGA | 5 cut(s) | 133, 281, 319, 433, 581 |
| AvaI | CYCGRG | 2 cut(s) | 248, 548 |
| BalI | TGGCCA | 1 cut(s) | 208 |
| BbsI | GAAGAC | 1 cut(s) | 306 |
| BccI | CCATC | 2 cut(s) | 65, 217 |
| BceAI | ACGGC | 1 cut(s) | 347 |
| BcoDI | GTCTC | 1 cut(s) | 391 |
| BfaI | CTAG | 5 cut(s) | 125, 200, 258, 558, 633 |
| BglII | AGATCT | 1 cut(s) | 193 |
| BmeT110I | CYCGRG | 2 cut(s) | 248, 548 |
| BmgBI | CACGTC | 1 cut(s) | 594 |
| BmgT120I | GGNCC | 2 cut(s) | 261, 561 |
| BmrI | ACTGGG | 1 cut(s) | 313 |
| BmsI | GCATC | 1 cut(s) | 518 |
| BmuI | ACTGGG | 1 cut(s) | 313 |
| BpiI | GAAGAC | 1 cut(s) | 306 |
| BpuEI | CTTGAG | 1 cut(s) | 412 |
| BsaJI | CCNNGG | 1 cut(s) | 363 |
| Bse1I | ACTGG | 2 cut(s) | 56, 308 |
| BseDI | CCNNGG | 1 cut(s) | 363 |
| BseGI | GGATG | 3 cut(s) | 81, 100, 209 |
| BseMII | CTCAG | 1 cut(s) | 33 |
| BseNI | ACTGG | 2 cut(s) | 56, 308 |
| BseRI | GAGGAG | 2 cut(s) | 361, 409 |
| BshFI | GGCC | 5 cut(s) | 208, 263, 362, 428, 563 |
| BsiHKCI | CYCGRG | 2 cut(s) | 248, 548 |
| BsiSI | CCGG | 2 cut(s) | 129, 429 |
| BsmAI | GTCTC | 1 cut(s) | 391 |
| BsnI | GGCC | 5 cut(s) | 208, 263, 362, 428, 563 |
| BsoBI | CYCGRG | 2 cut(s) | 248, 548 |
| Bsp1407I | TGTACA | 1 cut(s) | 419 |
| Bsp143I | GATC | 1 cut(s) | 193 |
| BspACI | CCGC | 1 cut(s) | 213 |
| BspANI | GGCC | 5 cut(s) | 208, 263, 362, 428, 563 |
| BspCNI | CTCAG | 1 cut(s) | 34 |
| BsrGI | TGTACA | 1 cut(s) | 419 |
| BsrI | ACTGG | 2 cut(s) | 56, 308 |
| BssECI | CCNNGG | 1 cut(s) | 363 |
| BssMI | GATC | 1 cut(s) | 193 |
| Bst6I | CTCTTC | 1 cut(s) | 368 |
| BstAUI | TGTACA | 1 cut(s) | 419 |
| BstC8I | GCNNGC | 1 cut(s) | 360 |
| BstDEI | CTNAG | 1 cut(s) | 42 |
| BstDSI | CCRYGG | 1 cut(s) | 363 |
| BstF5I | GGATG | 3 cut(s) | 81, 100, 209 |
| BstKTI | GATC | 1 cut(s) | 196 |
| BstMAI | GTCTC | 1 cut(s) | 391 |
| BstMBI | GATC | 1 cut(s) | 193 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 52 |
| BstV2I | GAAGAC | 1 cut(s) | 306 |
| BstX2I | RGATCY | 1 cut(s) | 193 |
| BstYI | RGATCY | 1 cut(s) | 193 |
| BsuRI | GGCC | 5 cut(s) | 208, 263, 362, 428, 563 |
| BtgI | CCRYGG | 1 cut(s) | 363 |
| BtrI | CACGTC | 1 cut(s) | 594 |
| BtsCI | GGATG | 3 cut(s) | 81, 100, 209 |
| BtsIMutI | CAGTG | 2 cut(s) | 63, 66 |
| Cac8I | GCNNGC | 1 cut(s) | 360 |
| Cfr13I | GGNCC | 2 cut(s) | 261, 561 |
| CseI | GACGC | 1 cut(s) | 35 |
| Csp6I | GTAC | 1 cut(s) | 420 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 90, 125 |
| CviQI | GTAC | 1 cut(s) | 420 |
| DdeI | CTNAG | 1 cut(s) | 42 |
| DpnI | GATC | 1 cut(s) | 195 |
| DpnII | GATC | 1 cut(s) | 193 |
| EaeI | YGGCCR | 3 cut(s) | 206, 360, 426 |
| Eam1104I | CTCTTC | 1 cut(s) | 368 |
| EarI | CTCTTC | 1 cut(s) | 368 |
| Eco57I | CTGAAG | 2 cut(s) | 71, 89 |
| Eco88I | CYCGRG | 2 cut(s) | 248, 548 |
| EcoRI | GAATTC | 1 cut(s) | 479 |
| FaiI | YATR | 8 cut(s) | 81, 83, 135, 173, 230, 406, 435, 621 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 483, 515 |
| FokI | GGATG | 3 cut(s) | 88, 107, 196 |
| FspBI | CTAG | 5 cut(s) | 125, 200, 258, 558, 633 |
| HaeIII | GGCC | 5 cut(s) | 208, 263, 362, 428, 563 |
| HapII | CCGG | 2 cut(s) | 129, 429 |
| HgaI | GACGC | 1 cut(s) | 35 |
| HinfI | GANTC | 4 cut(s) | 251, 279, 551, 579 |
| HpaII | CCGG | 2 cut(s) | 129, 429 |
| HphI | GGTGA | 5 cut(s) | 133, 281, 319, 433, 581 |
| Hpy166II | GTNNAC | 2 cut(s) | 188, 488 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 51, 291, 598 |
| Hpy188III | TCNNGA | 2 cut(s) | 200, 500 |
| Hpy8I | GTNNAC | 2 cut(s) | 188, 488 |
| HpyCH4IV | ACGT | 1 cut(s) | 593 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 52 |
| HpyF3I | CTNAG | 1 cut(s) | 42 |
| HpySE526I | ACGT | 1 cut(s) | 593 |
| Kzo9I | GATC | 1 cut(s) | 193 |
| LpnPI | CCDG | 7 cut(s) | 38, 69, 142, 289, 344, 442, 540 |
| LweI | GCATC | 1 cut(s) | 518 |
| MaeI | CTAG | 5 cut(s) | 125, 200, 258, 558, 633 |
| MaeII | ACGT | 1 cut(s) | 593 |
| MaeIII | GTNAC | 3 cut(s) | 58, 139, 439 |
| MalI | GATC | 1 cut(s) | 195 |
| MboI | GATC | 1 cut(s) | 193 |
| MboII | GAAGA | 4 cut(s) | 109, 188, 311, 385 |
| MflI | RGATCY | 1 cut(s) | 193 |
| MlsI | TGGCCA | 1 cut(s) | 208 |
| MluCI | AATT | 6 cut(s) | 179, 233, 351, 479, 533, 623 |
| MluNI | TGGCCA | 1 cut(s) | 208 |
| MlyI | GAGTC | 4 cut(s) | 260, 288, 560, 588 |
| MmeI | TCCRAC | 1 cut(s) | 276 |
| MnlI | CCTC | 7 cut(s) | 165, 229, 339, 387, 404, 465, 599 |
| Mox20I | TGGCCA | 1 cut(s) | 208 |
| MroXI | GAANNNNTTC | 1 cut(s) | 102 |
| MscI | TGGCCA | 1 cut(s) | 208 |
| MseI | TTAA | 3 cut(s) | 29, 354, 640 |
| Msp20I | TGGCCA | 1 cut(s) | 208 |
| MspI | CCGG | 2 cut(s) | 129, 429 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 52 |
| NdeII | GATC | 1 cut(s) | 193 |
| NmuCI | GTSAC | 3 cut(s) | 58, 139, 439 |
| PaeR7I | CTCGAG | 2 cut(s) | 248, 548 |
| PdmI | GAANNNNTTC | 1 cut(s) | 102 |
| PleI | GAGTC | 4 cut(s) | 259, 287, 559, 587 |
| PpsI | GAGTC | 4 cut(s) | 259, 287, 559, 587 |
| PspPI | GGNCC | 2 cut(s) | 261, 561 |
| PspXI | VCTCGAGB | 2 cut(s) | 248, 548 |
| PsuI | RGATCY | 1 cut(s) | 193 |
| RsaI | GTAC | 1 cut(s) | 421 |
| RsaNI | GTAC | 1 cut(s) | 420 |
| SaqAI | TTAA | 3 cut(s) | 29, 354, 640 |
| Sau3AI | GATC | 1 cut(s) | 193 |
| Sau96I | GGNCC | 2 cut(s) | 261, 561 |
| SchI | GAGTC | 4 cut(s) | 260, 288, 560, 588 |
| SetI | ASST | 5 cut(s) | 13, 65, 221, 360, 596 |
| SfaNI | GCATC | 1 cut(s) | 518 |
| Sfr274I | CTCGAG | 2 cut(s) | 248, 548 |
| SlaI | CTCGAG | 2 cut(s) | 248, 548 |
| SmlI | CTYRAG | 3 cut(s) | 248, 391, 548 |
| SmoI | CTYRAG | 3 cut(s) | 248, 391, 548 |
| Sse9I | AATT | 6 cut(s) | 179, 233, 351, 479, 533, 623 |
| SsiI | CCGC | 1 cut(s) | 213 |
| SspMI | CTAG | 5 cut(s) | 125, 200, 258, 558, 633 |
| TaiI | ACGT | 1 cut(s) | 596 |
| TaqI | TCGA | 2 cut(s) | 249, 549 |
| TasI | AATT | 6 cut(s) | 179, 233, 351, 479, 533, 623 |
| TatI | WGTACW | 1 cut(s) | 419 |
| Tru1I | TTAA | 3 cut(s) | 29, 354, 640 |
| Tru9I | TTAA | 3 cut(s) | 29, 354, 640 |
| TscAI | CASTG | 2 cut(s) | 63, 73 |
| TseFI | GTSAC | 3 cut(s) | 58, 139, 439 |
| Tsp45I | GTSAC | 3 cut(s) | 58, 139, 439 |
| TspDTI | ATGAA | 2 cut(s) | 111, 618 |
| TspGWI | ACGGA | 1 cut(s) | 29 |
| TspRI | CASTG | 2 cut(s) | 63, 73 |
| XapI | RAATTY | 4 cut(s) | 179, 233, 479, 623 |
| XbaI | TCTAGA | 1 cut(s) | 199 |
| XhoI | CTCGAG | 2 cut(s) | 248, 548 |
| XmnI | GAANNNNTTC | 1 cut(s) | 102 |
| XspI | CTAG | 5 cut(s) | 125, 200, 258, 558, 633 |