Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003326

Physical Location & Seq

Genomic Coordinates Forward (+)

20113111 .. 20116306

Gene Structure 3196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17610.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTGCGGATGTCTTATTATGACACCGCAGTGAAGCTGGCGGAAAGTAGAAATATTCAGGATCTTGTTGATATTGATGTATTCCAAGAAGCGAAAAAGGTTATTGAAGCCCTTCAGAATAAGGACGTGGGTCCTGCCCTAGCCTGGTGCGCTGAGAACAAGTCAAGGTTAAAGAAATCCAAGAGTAAATTTGAGTTTCAACTGAGACTTCAAGAGTTTATAGAGTTGGTACGAGCTGAAAATAACTTCATCGCTATCACATATGCTCGGAAATATCTTGCACCCTGGGGAACTACTCATATGAAAGAATTGCAGCGGGTCTTTGTAACGGTAGCTTATAAGAGTACTACTGAATGTGCTACATACAAGGTGTTATTTGAGCCAAAGCAATGGGACTACCTGGTTGATCAATTTAAACAGGAATTCTGCAAGTTATATGGCATGACACTTGAGCCTTTGCTCAATATTTATCTGCAAGCAGGCCTTTCTGCTCTTAAAACCCCATATTGTTATGATGATGATTGCACCAAGGAGGATCCACTATCGCAGGAGGGTTTCCGGAAACTAGCCCTGCCCTTACCTTATTCTAAGCAGCATCACTCGAAGCTTGTTTGCTACATAACTAAGGAACTAATGGACACAGAGAACCCACCGCAAGTCTTGCCCAACGGCTATGTCTACAGCTCTAAGGCTCTTGAAGAAATGGCAAGGAAGAATGACGGTAAGATTACTTGTCCAAGGACAGGCTTGATCTGCAATTACACAGATCTGGTGAAGGCATATATATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLTH

Protein Analysis

264

Amino Acids

30.46

Weight (kDa)

8.28

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55070 AT3G55070
fragaria_vesca	FvH4_7g20680 FvH4_7g20680 FvH4_7g20680
malus_domestica	MD01G1115200.v1.1 MD01G1115600.v1.1 MD07G1183500.v1.1
prunus_persica	Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1
pyrus_communis	pycom01g14420 pycom07g17610
rosa_chinensis	RchiOBHm_Chr1g0364711 RchiOBHm_Chr1g0364821 RchiOBHm_Chr1g0364831
rosa_laevigata	RLG00000027464
rosa_multiflora	Rmu_co8292327.1_g000001 Rmu_sc0028465.1_g000001 Rmu_sc0028466.1_g000001 Rmu_ssc0000112.1_g000032
rosa_roxburghii	Rroxscaffold_4G00291710 Rroxscaffold_4G00291720 Rroxscaffold_4G00292120 Rroxscaffold_4G00292130 Rroxscaffold_4G00292150
rosa_rugosa	Rorug01G0318300 Rorug01G0318500
rosa_samantha	Rh1AG327100 Rh1BG288200 Rh1BG288300 Rh1CG304900 Rh1CG305000 Rh1DG319900
rosa_wichuraiana	Rw1G028970 Rw1G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	678
AccIII	TCCGGA	1 cut(s)	558
AciI	CCGC	5 cut(s)	7, 27, 41, 316, 653
AclWI	GGATC	3 cut(s)	69, 530, 543
AcsI	RAATTY	2 cut(s)	188, 422
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	2 cut(s)	231, 346
AfiI	CCNNNNNNNGG	2 cut(s)	144, 743
AgsI	TTSAA	4 cut(s)	107, 200, 212, 698
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	3 cut(s)	143, 284, 399
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	5 cut(s)	37, 236, 335, 607, 684
AluI	AGCT	5 cut(s)	37, 236, 335, 607, 684
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	3 cut(s)	69, 530, 543
Aor13HI	TCCGGA	1 cut(s)	558
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	2 cut(s)	313, 592
ApoI	RAATTY	2 cut(s)	188, 422
Asp700I	GAANNNNTTC	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	784
AvaII	GGWCC	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	535
BbvI	GCAGC	2 cut(s)	325, 604
BceAI	ACGGC	1 cut(s)	685
BcgI	CGANNNNNNTGC	1 cut(s)	768
BciT130I	CCWGG	3 cut(s)	145, 286, 401
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	140, 566
BfmI	CTRYAG	1 cut(s)	679
BglII	AGATCT	1 cut(s)	766
BisI	GCNGC	2 cut(s)	314, 593
BlsI	GCNGC	2 cut(s)	315, 594
BmcAI	AGTACT	1 cut(s)	346
Bme1390I	CCNGG	3 cut(s)	145, 286, 401
Bme18I	GGWCC	1 cut(s)	131
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	132, 537
BmrFI	CCNGG	3 cut(s)	145, 286, 401
BmsI	GCATC	1 cut(s)	604
BoxI	GACNNNNGTC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	470
BsaJI	CCNNGG	4 cut(s)	284, 285, 528, 737
BsaWI	WCCGGW	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 743
Bse3DI	GCAATG	1 cut(s)	395
BseAI	TCCGGA	1 cut(s)	558
BseBI	CCWGG	3 cut(s)	145, 286, 401
BseDI	CCNNGG	4 cut(s)	284, 285, 528, 737
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	2 cut(s)	144, 743
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	2 cut(s)	144, 194
BseXI	GCAGC	2 cut(s)	325, 604
BshFI	GGCC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	559
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	2 cut(s)	144, 743
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	483
Bsp13I	TCCGGA	1 cut(s)	558
Bsp143I	GATC	5 cut(s)	61, 406, 535, 750, 766
BspACI	CCGC	5 cut(s)	7, 27, 41, 316, 653
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	145, 195
BspEI	TCCGGA	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	132, 537
BspPI	GGATC	3 cut(s)	69, 530, 543
BsrDI	GCAATG	1 cut(s)	395
BssECI	CCNNGG	4 cut(s)	284, 285, 528, 737
BssMI	GATC	5 cut(s)	61, 406, 535, 750, 766
BssT1I	CCWWGG	2 cut(s)	528, 737
Bst2UI	CCWGG	3 cut(s)	145, 286, 401
Bst4CI	ACNGT	2 cut(s)	331, 722
BstAPI	GCANNNNNTGC	1 cut(s)	661
BstC8I	GCNNGC	3 cut(s)	39, 477, 481
BstDEI	CTNAG	5 cut(s)	153, 203, 588, 624, 687
BstF5I	GGATG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	5 cut(s)	64, 409, 538, 753, 769
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	5 cut(s)	61, 406, 535, 750, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 661, 753
BstNI	CCWGG	3 cut(s)	145, 286, 401
BstPAI	GACNNNNGTC	1 cut(s)	129
BstSCI	CCNGG	3 cut(s)	143, 284, 399
BstSFI	CTRYAG	1 cut(s)	679
BstV1I	GCAGC	2 cut(s)	325, 604
BstX2I	RGATCY	3 cut(s)	61, 535, 766
BstXI	CCANNNNNNTGG	1 cut(s)	390
BstYI	RGATCY	3 cut(s)	61, 535, 766
BsuRI	GGCC	1 cut(s)	483
BtgZI	GCGATG	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	15
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	39, 477, 481
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	131
CsiI	ACCWGGT	1 cut(s)	399
Csp6I	GTAC	2 cut(s)	230, 345
CviAII	CATG	1 cut(s)	442
CviQI	GTAC	2 cut(s)	230, 345
DdeI	CTNAG	5 cut(s)	153, 203, 588, 624, 687
DpnI	GATC	5 cut(s)	63, 408, 537, 752, 768
DpnII	GATC	5 cut(s)	61, 406, 535, 750, 766
DraI	TTTAAA	1 cut(s)	415
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	528, 737
Eco147I	AGGCCT	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	422
EcoRII	CCWGG	3 cut(s)	143, 284, 399
EcoT14I	CCWWGG	2 cut(s)	528, 737
ErhI	CCWWGG	2 cut(s)	528, 737
FaeI	CATG	1 cut(s)	445
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	1 cut(s)	441
FauI	CCCGC	1 cut(s)	309
FauNDI	CATATG	2 cut(s)	262, 300
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	2 cut(s)	314, 593
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	314, 593
FspBI	CTAG	2 cut(s)	140, 566
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	2 cut(s)	314, 593
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	1 cut(s)	559
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	445
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	605
HpaII	CCGG	1 cut(s)	559
HphI	GGTGA	1 cut(s)	784
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	2 cut(s)	117, 270
Hpy188III	TCNNGA	4 cut(s)	59, 212, 559, 695
Hpy8I	GTNNAC	1 cut(s)	679
HpyAV	CCTTC	2 cut(s)	122, 769
HpyCH4III	ACNGT	2 cut(s)	331, 722
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	6 cut(s)	281, 313, 429, 475, 525, 756
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 661, 753
HpyF3I	CTNAG	5 cut(s)	153, 203, 588, 624, 687
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	445
HspAI	GCGC	1 cut(s)	150
Kpn2I	TCCGGA	1 cut(s)	558
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	5 cut(s)	61, 406, 535, 750, 766
Lsp1109I	GCAGC	2 cut(s)	325, 604
LweI	GCATC	1 cut(s)	604
MabI	ACCWGGT	1 cut(s)	399
MaeI	CTAG	2 cut(s)	140, 566
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	5 cut(s)	63, 408, 537, 752, 768
MboI	GATC	5 cut(s)	61, 406, 535, 750, 766
MboII	GAAGA	2 cut(s)	710, 724
MflI	RGATCY	3 cut(s)	61, 535, 766
MluCI	AATT	5 cut(s)	188, 308, 410, 422, 757
MnlI	CCTC	2 cut(s)	526, 544
MroI	TCCGGA	1 cut(s)	558
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	3 cut(s)	170, 414, 495
MslI	CAYNNNNRTG	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	1 cut(s)	559
MspR9I	CCNGG	3 cut(s)	145, 286, 401
MvaI	CCWGG	3 cut(s)	145, 286, 401
MwoI	GCNNNNNNNGC	3 cut(s)	149, 661, 753
NdeI	CATATG	2 cut(s)	262, 300
NdeII	GATC	5 cut(s)	61, 406, 535, 750, 766
NlaIII	CATG	1 cut(s)	445
NlaIV	GGNNCC	2 cut(s)	132, 537
OliI	CACNNNNGTG	1 cut(s)	29
PasI	CCCWGGG	1 cut(s)	285
PceI	AGGCCT	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	315, 594
PpuMI	RGGWCCY	1 cut(s)	131
PshAI	GACNNNNGTC	1 cut(s)	129
PsiI	TTATAA	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	131
Psp6I	CCWGG	3 cut(s)	143, 284, 399
PspGI	CCWGG	3 cut(s)	143, 284, 399
PspN4I	GGNNCC	2 cut(s)	132, 537
PspPI	GGNCC	1 cut(s)	131
PspPPI	RGGWCCY	1 cut(s)	131
PsuI	RGATCY	3 cut(s)	61, 535, 766
RsaI	GTAC	2 cut(s)	231, 346
RsaNI	GTAC	2 cut(s)	230, 345
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	170, 414, 495
SatI	GCNGC	2 cut(s)	314, 593
Sau3AI	GATC	5 cut(s)	61, 406, 535, 750, 766
Sau96I	GGNCC	1 cut(s)	131
ScaI	AGTACT	1 cut(s)	346
ScrFI	CCNGG	3 cut(s)	145, 286, 401
SexAI	ACCWGGT	1 cut(s)	399
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	1 cut(s)	679
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	5 cut(s)	188, 308, 410, 422, 757
SseBI	AGGCCT	1 cut(s)	483
SsiI	CCGC	5 cut(s)	7, 27, 41, 316, 653
SspI	AATATT	2 cut(s)	55, 466
SspMI	CTAG	2 cut(s)	140, 566
StuI	AGGCCT	1 cut(s)	483
StyD4I	CCNGG	3 cut(s)	143, 284, 399
StyI	CCWWGG	2 cut(s)	528, 737
TaaI	ACNGT	2 cut(s)	331, 722
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	602
TasI	AATT	5 cut(s)	188, 308, 410, 422, 757
TatI	WGTACW	1 cut(s)	344
Tru1I	TTAA	3 cut(s)	170, 414, 495
Tru9I	TTAA	3 cut(s)	170, 414, 495
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	2 cut(s)	313, 592
TspDTI	ATGAA	2 cut(s)	238, 317
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	2 cut(s)	188, 422
XmiI	GTMKAC	1 cut(s)	678
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	2 cut(s)	140, 566
ZrmI	AGTACT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.