FvH4_7g20680

Macrophage erythroblast

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
16762978 .. 16766675
3698 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20680.t1

Sequence Viewer

Length: 1257 bp
ATGGAGATGGACTCCCTCCCCAACGGCACCTCCGCCCCGCCGAGCCCAGGCCCAAGCCCAAGCCCAAGCCCAAGCCCAGCCGCCGCGCCTCCGCCGTCCTCAAAGCTCAACCACCTCTCCGACTCCTTGAAGCTCGAGCACCAGTTCCTCCGCGTCCCCTTCGAGCACTACAAGAAGACGATCCGCGCCAACCACCGCGTCGCCGAGAAGGAGATGTCCGCCGTCATCCACGGCGTCAACGAAGCCGCCGACCGCGACGACATGCTCTGCGACGACGCCGTTTCTCACCTCAACTCCCTCGTCTCCAGGCTCCAAGGCCTCAAACGAAAGCTGGAGGAGGGGAGCAAGACTGAGAACTTACAGGCGCAGCGGTGCCGGGCGAGGCTGGATCATTTGGAATCAGCAGATGTGGAGAATTTATCAGAATGGAACAATGTGCGGTTGAACCGGATCCTTGTGGACTATATGTTGAGGATGTCTTATTACGACACTGCGGCGAAGTTGGCTGAAAGCCAAAATATTCAGGATCTTGTTGATATCGATGTATTTCAAGAAGCCAGAAAGGTTATTGAAGCTCTCCAGAATAAGGATGTAGGCCCTGCCCTAGCTTGGTGTGCAGAGAACAAGTCAAGGTTAAAGAAATCCAAGAGCAAATTGGAGTTTCAGCTAAGAATTCAAGAGTTTATAGAGTTGGTACGAGCTGAAAATAACTTGCGAGCTATCACATATGCCCAGAAATACCTTGCACCATGGGGTACTATGTATATGAAAGAATTGCAGCGGGTCTTTGTAACAGTTGCTTATAAGAGTACTACTGAATGTGCTACATACAAGGTATTATTTGAACCAAAACAATGGGATTACCTGGTTGACCAATTCAAACAGGAATTCTGCAAGTTATATGGCATGACGCTTGAGCCTCTGCTGAATATTTATCTGCAAGCAGGACTCTCTGCTCTGAAAACACCATACTGTTATGAAGATGATTGCACCAAGGAGGATCCATTGTCACAGGAAGGTTTCCGTAAGCTAGCCATGCCATTACCTTATTCTAAGCAGCATCACTCGAAGCTTGTTTGCTATATAACTAAGGAACTGATGGACACGGAAAATCCACCACAAGTTCTGCCAAACGGCTATGTCTACAGCACTAAGGCTCTAGAAGAAATGGCCAAGAAATATAACGGGAAGATTACTTGTCCAAGGACAGGTTTGGTCTGCAACTACACAGATCTGGTGAAGGCATATATATCATGA

Protein Analysis

419

Amino Acids

47.69

Weight (kDa)

7.09

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTLH PF10607 182 - 324 7.9e-48 CTLH/CRA C-terminal to LisH motif domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 804
AccB1I GGYRCC 2 cut(s) 26, 372
AccI GTMKAC 1 cut(s) 1143
AccII CGCG 5 cut(s) 86, 153, 186, 198, 255
AclWI GGATC 7 cut(s) 175, 396, 445, 458, 534, 995, 1008
AcoI YGGCCR 1 cut(s) 1170
AcsI RAATTY 3 cut(s) 415, 672, 887
AcyI GRCGYC 2 cut(s) 234, 276
AfaI GTAC 3 cut(s) 696, 757, 811
AfiI CCNNNNNNNGG 4 cut(s) 47, 586, 609, 1208
AgsI TTSAA 7 cut(s) 130, 445, 551, 572, 677, 845, 880
AjnI CCWGG 3 cut(s) 46, 305, 864
Alw21I GWGCWC 2 cut(s) 141, 168
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 7 cut(s) 175, 396, 445, 458, 534, 995, 1008
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 4 cut(s) 49, 316, 595, 1170
ApeKI GCWGC 3 cut(s) 367, 778, 1057
ApoI RAATTY 3 cut(s) 415, 672, 887
AspLEI GCGC 3 cut(s) 88, 188, 367
AspS9I GGNCC 2 cut(s) 50, 596
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 2 cut(s) 278, 1249
AsuNHI GCTAGC 1 cut(s) 1030
AvaI CYCGRG 1 cut(s) 134
BalI TGGCCA 1 cut(s) 1172
BamHI GGATCC 2 cut(s) 450, 1000
BanI GGYRCC 2 cut(s) 26, 372
BanII GRGCYC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 141, 168
BbvI GCAGC 3 cut(s) 379, 790, 1069
BccI CCATC 1 cut(s) 1093
BceAI ACGGC 6 cut(s) 40, 79, 206, 247, 263, 1150
BciT130I CCWGG 3 cut(s) 48, 307, 866
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 3 cut(s) 605, 1031, 1160
BfmI CTRYAG 1 cut(s) 1144
BglII AGATCT 1 cut(s) 1231
BisI GCNGC 7 cut(s) 81, 84, 246, 368, 495, 779, 1058
BlsI GCNGC 7 cut(s) 82, 85, 247, 369, 496, 780, 1059
BmcAI AGTACT 1 cut(s) 811
Bme1390I CCNGG 4 cut(s) 48, 307, 377, 866
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 2 cut(s) 50, 596
BmiI GGNNCC 5 cut(s) 28, 311, 374, 452, 1002
BmrFI CCNGG 4 cut(s) 48, 307, 377, 866
BmsI GCATC 1 cut(s) 1069
BmtI GCTAGC 1 cut(s) 1034
BpiI GAAGAC 1 cut(s) 182
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 3 cut(s) 289, 353, 563
BpuEI CTTGAG 1 cut(s) 935
BpuMI CCSGG 1 cut(s) 377
Bsa29I ATCGAT 1 cut(s) 540
BsaHI GRCGYC 2 cut(s) 234, 276
BsaJI CCNNGG 6 cut(s) 46, 229, 313, 749, 993, 1202
BsaWI WCCGGW 1 cut(s) 447
BsaXI ACNNNNNCTCC 6 cut(s) 14, 44, 101, 131, 278, 308
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 586, 609, 1208
Bse1I ACTGG 1 cut(s) 142
BseBI CCWGG 3 cut(s) 48, 307, 866
BseCI ATCGAT 1 cut(s) 540
BseDI CCNNGG 6 cut(s) 46, 229, 313, 749, 993, 1202
BseGI GGATG 3 cut(s) 225, 480, 595
BseLI CCNNNNNNNGG 4 cut(s) 47, 586, 609, 1208
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 3 cut(s) 379, 790, 1069
BseYI CCCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 636
Bsh1236I CGCG 5 cut(s) 86, 153, 186, 198, 255
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 4 cut(s) 51, 318, 597, 1172
BshNI GGYRCC 2 cut(s) 26, 372
BshVI ATCGAT 1 cut(s) 540
BsiEI CGRYCG 1 cut(s) 253
BsiHKAI GWGCWC 2 cut(s) 141, 168
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 2 cut(s) 376, 448
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 4 cut(s) 47, 586, 609, 1208
BsmAI GTCTC 1 cut(s) 307
BsmBI CGTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 4 cut(s) 51, 318, 597, 1172
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 3 cut(s) 47, 141, 168
Bsp143I GATC 6 cut(s) 180, 388, 450, 526, 1000, 1231
Bsp19I CCATGG 1 cut(s) 749
BspANI GGCC 4 cut(s) 51, 318, 597, 1172
BspCNI CTCAG 1 cut(s) 343
BspDI ATCGAT 1 cut(s) 540
BspFNI CGCG 5 cut(s) 86, 153, 186, 198, 255
BspHI TCATGA 1 cut(s) 1253
BspLI GGNNCC 5 cut(s) 28, 311, 374, 452, 1002
BspOI GCTAGC 1 cut(s) 1034
BspPI GGATC 7 cut(s) 175, 396, 445, 458, 534, 995, 1008
BspT107I GGYRCC 2 cut(s) 26, 372
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 6 cut(s) 46, 229, 313, 749, 993, 1202
BssMI GATC 6 cut(s) 180, 388, 450, 526, 1000, 1231
BssNI GRCGYC 2 cut(s) 234, 276
BssT1I CCWWGG 4 cut(s) 313, 749, 993, 1202
Bst2UI CCWGG 3 cut(s) 48, 307, 866
Bst4CI ACNGT 2 cut(s) 796, 974
BstACI GRCGYC 2 cut(s) 234, 276
BstC8I GCNNGC 3 cut(s) 717, 942, 1032
BstDEI CTNAG 5 cut(s) 351, 668, 1053, 1089, 1152
BstDSI CCRYGG 2 cut(s) 229, 749
BstF5I GGATG 3 cut(s) 225, 480, 595
BstFNI CGCG 5 cut(s) 86, 153, 186, 198, 255
BstHHI GCGC 3 cut(s) 88, 188, 367
BstKTI GATC 6 cut(s) 183, 391, 453, 529, 1003, 1234
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 6 cut(s) 180, 388, 450, 526, 1000, 1231
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 3 cut(s) 503, 614, 1036
BstNI CCWGG 3 cut(s) 48, 307, 866
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 4 cut(s) 46, 305, 375, 864
BstSFI CTRYAG 1 cut(s) 1144
BstUI CGCG 5 cut(s) 86, 153, 186, 198, 255
BstV1I GCAGC 3 cut(s) 379, 790, 1069
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 4 cut(s) 450, 526, 1000, 1231
BstXI CCANNNNNNTGG 1 cut(s) 855
BstYI RGATCY 4 cut(s) 450, 526, 1000, 1231
Bsu15I ATCGAT 1 cut(s) 540
BsuRI GGCC 4 cut(s) 51, 318, 597, 1172
BsuTUI ATCGAT 1 cut(s) 540
BtgI CCRYGG 2 cut(s) 229, 749
BtsCI GGATG 3 cut(s) 225, 480, 595
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 3 cut(s) 717, 942, 1032
CciI TCATGA 1 cut(s) 1253
CfoI GCGC 3 cut(s) 88, 188, 367
Cfr13I GGNCC 2 cut(s) 50, 596
ClaI ATCGAT 1 cut(s) 540
CseI GACGC 5 cut(s) 142, 187, 223, 284, 919
CsiI ACCWGGT 1 cut(s) 864
Csp6I GTAC 3 cut(s) 695, 756, 810
CviAII CATG 5 cut(s) 262, 750, 907, 1036, 1254
CviQI GTAC 3 cut(s) 695, 756, 810
DdeI CTNAG 5 cut(s) 351, 668, 1053, 1089, 1152
DpnI GATC 6 cut(s) 182, 390, 452, 528, 1002, 1233
DpnII GATC 6 cut(s) 180, 388, 450, 526, 1000, 1231
EaeI YGGCCR 1 cut(s) 1170
EciI GGCGGA 3 cut(s) 22, 81, 208
Eco130I CCWWGG 4 cut(s) 313, 749, 993, 1202
Eco147I AGGCCT 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 538
Eco88I CYCGRG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 596
EcoRI GAATTC 2 cut(s) 672, 887
EcoRII CCWGG 3 cut(s) 46, 305, 864
EcoRV GATATC 1 cut(s) 538
EcoT14I CCWWGG 4 cut(s) 313, 749, 993, 1202
EcoT38I GRGCYC 1 cut(s) 47
ErhI CCWWGG 4 cut(s) 313, 749, 993, 1202
Esp3I CGTCTC 1 cut(s) 307
FaeI CATG 5 cut(s) 265, 753, 910, 1039, 1257
FaqI GGGAC 1 cut(s) 140
FatI CATG 5 cut(s) 261, 749, 906, 1035, 1253
FauI CCCGC 2 cut(s) 45, 774
FauNDI CATATG 1 cut(s) 727
FblI GTMKAC 1 cut(s) 1143
Fnu4HI GCNGC 7 cut(s) 81, 84, 246, 368, 495, 779, 1058
FokI GGATG 3 cut(s) 212, 487, 602
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 7 cut(s) 81, 84, 246, 368, 495, 779, 1058
FspBI CTAG 3 cut(s) 605, 1031, 1160
GlaI GCGC 3 cut(s) 87, 187, 366
GluI GCNGC 7 cut(s) 81, 84, 246, 368, 495, 779, 1058
GsaI CCCAGC 1 cut(s) 80
GsuI CTGGAG 3 cut(s) 289, 353, 563
HaeIII GGCC 4 cut(s) 51, 318, 597, 1172
HapII CCGG 2 cut(s) 376, 448
HgaI GACGC 5 cut(s) 142, 187, 223, 284, 919
HhaI GCGC 3 cut(s) 88, 188, 367
Hin1I GRCGYC 2 cut(s) 234, 276
Hin1II CATG 5 cut(s) 265, 753, 910, 1039, 1257
Hin6I GCGC 3 cut(s) 86, 186, 365
HinP1I GCGC 3 cut(s) 86, 186, 365
HincII GTYRAC 2 cut(s) 238, 871
HindII GTYRAC 2 cut(s) 238, 871
HindIII AAGCTT 1 cut(s) 1070
HinfI GANTC 4 cut(s) 11, 122, 398, 948
HpaII CCGG 2 cut(s) 376, 448
HphI GGTGA 2 cut(s) 278, 1249
Hpy166II GTNNAC 4 cut(s) 238, 460, 871, 1144
Hpy188I TCNGA 3 cut(s) 121, 424, 960
Hpy188III TCNNGA 6 cut(s) 524, 551, 580, 677, 1160, 1254
Hpy8I GTNNAC 4 cut(s) 238, 460, 871, 1144
Hpy99I CGWCG 4 cut(s) 203, 260, 275, 278
HpyAV CCTTC 4 cut(s) 169, 202, 1010, 1234
HpyCH4III ACNGT 2 cut(s) 796, 974
HpyCH4V TGCA 7 cut(s) 617, 746, 778, 894, 940, 990, 1221
HpyF10VI GCNNNNNNNGC 3 cut(s) 503, 614, 1036
HpyF3I CTNAG 5 cut(s) 351, 668, 1053, 1089, 1152
Hsp92I GRCGYC 2 cut(s) 234, 276
Hsp92II CATG 5 cut(s) 265, 753, 910, 1039, 1257
HspAI GCGC 3 cut(s) 86, 186, 365
Kzo9I GATC 6 cut(s) 180, 388, 450, 526, 1000, 1231
LmnI GCTCC 2 cut(s) 315, 342
Lsp1109I GCAGC 3 cut(s) 379, 790, 1069
LweI GCATC 1 cut(s) 1069
MabI ACCWGGT 1 cut(s) 864
MaeI CTAG 3 cut(s) 605, 1031, 1160
MaeIII GTNAC 2 cut(s) 790, 1008
MalI GATC 6 cut(s) 182, 390, 452, 528, 1002, 1233
MboI GATC 6 cut(s) 180, 388, 450, 526, 1000, 1231
MboII GAAGA 4 cut(s) 187, 992, 1175, 1201
MflI RGATCY 4 cut(s) 450, 526, 1000, 1231
MhlI GDGCHC 3 cut(s) 47, 141, 168
MlsI TGGCCA 1 cut(s) 1172
MluCI AATT 6 cut(s) 415, 653, 672, 773, 875, 887
MluNI TGGCCA 1 cut(s) 1172
MlyI GAGTC 3 cut(s) 5, 116, 942
MmeI TCCRAC 1 cut(s) 144
Mox20I TGGCCA 1 cut(s) 1172
MscI TGGCCA 1 cut(s) 1172
MseI TTAA 1 cut(s) 635
Msp20I TGGCCA 1 cut(s) 1172
MspA1I CMGCKG 2 cut(s) 370, 781
MspI CCGG 2 cut(s) 376, 448
MspR9I CCNGG 4 cut(s) 48, 307, 377, 866
MvaI CCWGG 3 cut(s) 48, 307, 866
MvnI CGCG 5 cut(s) 86, 153, 186, 198, 255
MwoI GCNNNNNNNGC 3 cut(s) 503, 614, 1036
NciI CCSGG 1 cut(s) 377
NcoI CCATGG 1 cut(s) 749
NdeI CATATG 1 cut(s) 727
NdeII GATC 6 cut(s) 180, 388, 450, 526, 1000, 1231
NheI GCTAGC 1 cut(s) 1030
NlaIII CATG 5 cut(s) 265, 753, 910, 1039, 1257
NlaIV GGNNCC 5 cut(s) 28, 311, 374, 452, 1002
NmeAIII GCCGAG 2 cut(s) 66, 229
NmuCI GTSAC 1 cut(s) 1008
NspI RCATGY 1 cut(s) 265
PaeR7I CTCGAG 1 cut(s) 134
PagI TCATGA 1 cut(s) 1253
PceI AGGCCT 1 cut(s) 318
PcsI WCGNNNNNNNCGW 2 cut(s) 237, 246
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 7 cut(s) 82, 85, 247, 369, 496, 780, 1059
PleI GAGTC 3 cut(s) 5, 116, 942
PpsI GAGTC 3 cut(s) 5, 116, 942
PsiI TTATAA 1 cut(s) 804
Psp6I CCWGG 3 cut(s) 46, 305, 864
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 3 cut(s) 46, 305, 864
PspN4I GGNNCC 5 cut(s) 28, 311, 374, 452, 1002
PspPI GGNCC 2 cut(s) 50, 596
PspXI VCTCGAGB 1 cut(s) 134
PsuI RGATCY 4 cut(s) 450, 526, 1000, 1231
RsaI GTAC 3 cut(s) 696, 757, 811
RsaNI GTAC 3 cut(s) 695, 756, 810
SaqAI TTAA 1 cut(s) 635
SatI GCNGC 7 cut(s) 81, 84, 246, 368, 495, 779, 1058
Sau3AI GATC 6 cut(s) 180, 388, 450, 526, 1000, 1231
Sau96I GGNCC 2 cut(s) 50, 596
ScaI AGTACT 1 cut(s) 811
SchI GAGTC 3 cut(s) 5, 116, 942
ScrFI CCNGG 4 cut(s) 48, 307, 377, 866
SduI GDGCHC 3 cut(s) 47, 141, 168
SexAI ACCWGGT 1 cut(s) 864
SfaNI GCATC 1 cut(s) 1069
SfcI CTRYAG 1 cut(s) 1144
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 134, 914
SmoI CTYRAG 2 cut(s) 134, 914
Sse9I AATT 6 cut(s) 415, 653, 672, 773, 875, 887
SseBI AGGCCT 1 cut(s) 318
SspI AATATT 2 cut(s) 520, 931
SspMI CTAG 3 cut(s) 605, 1031, 1160
StuI AGGCCT 1 cut(s) 318
StyD4I CCNGG 4 cut(s) 46, 305, 375, 864
StyI CCWWGG 4 cut(s) 313, 749, 993, 1202
TaaI ACNGT 2 cut(s) 796, 974
TaqI TCGA 4 cut(s) 135, 162, 540, 1067
TasI AATT 6 cut(s) 415, 653, 672, 773, 875, 887
TatI WGTACW 1 cut(s) 809
TauI GCSGC 4 cut(s) 83, 86, 248, 497
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 1 cut(s) 635
Tru9I TTAA 1 cut(s) 635
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 1008
TseI GCWGC 3 cut(s) 367, 778, 1057
Tsp45I GTSAC 1 cut(s) 1008
TspDTI ATGAA 2 cut(s) 782, 993
TspGWI ACGGA 2 cut(s) 1013, 1121
TspRI CASTG 1 cut(s) 496
XapI RAATTY 3 cut(s) 415, 672, 887
XbaI TCTAGA 1 cut(s) 1159
XceI RCATGY 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 652
XhoI CTCGAG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 1143
XspI CTAG 3 cut(s) 605, 1031, 1160
ZrmI AGTACT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.