Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003326

Physical Location & Seq

Genomic Coordinates Forward (+)

54542878 .. 54548267

Gene Structure 5390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG319900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGATGATTGAGGTAAAAGATAGTTTAGACAAGGATCAATTTAGTTTTGGTGTGAAGTCATCAAATGGATTTGACCTTGATCTTGTTGATATCGATGTATTTCAAGAAGCCAGAAAGGTTATTGAAGCTCTCCAGAATAAGGAGGTAGGCCCTGCCCTAGCCTGGTGTGCTGAGAACAAGTCAAGGTTAAAGAAATCCAAGAGCAAATTGGAGTTTCAGCTAAGACTTCAAGAGTTTATAGAGTTGGTACGAGCTGAAAATAACTTACGAGCTATCACATATGCCCAGAAATACCTTGCACCATGGGGTACTACCTATATGAAAGAATTGCAGCGGGTCTTTGTAACAGTAGCTTATAAGAGTACTACCGAATGTGGTACATACAAGGTTTTATTTGAACCAAAACAATGGGATTACCTGGTTGACCAATTCAAACAGGAATTCTGCAAGTTATATGGCATGACACTTGAGCCTCTGCTGAATATTTATCTGCAAGCAGGACTCTCTGCTCTGAAAACTCCATATTGTTATGAAGATGATTGCACCAAGGAGGATCCACTGTCACAGGAAGGTTTCCGTAAGCTAGCCCTGCCATTACCTTATTCTAAGCAGCATCACTCAAAGCTTGTTTGCTACATAACTAAGGAACTGATGGACACGGAAAATCCGCCACAAGTTCTGCCAAACGGCCGTGTCTACAGCACTAAGGCCCTGGAAGAAATGGCCAAGAAGAATGATGGGAAAATTACTTGTCCGAGGACAGGTGAGGTCTACAACTACACAGATCTGGTGAAGGCATATATATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLTH

Protein Analysis

269

Amino Acids

31.06

Weight (kDa)

6.75

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	33 - 175	3.6e-48	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55070 AT3G55070
fragaria_vesca	FvH4_7g20680 FvH4_7g20680 FvH4_7g20680
malus_domestica	MD01G1115200.v1.1 MD01G1115600.v1.1 MD07G1183500.v1.1
prunus_persica	Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1
pyrus_communis	pycom01g14420 pycom07g17610
rosa_chinensis	RchiOBHm_Chr1g0364711 RchiOBHm_Chr1g0364821 RchiOBHm_Chr1g0364831
rosa_laevigata	RLG00000027464
rosa_multiflora	Rmu_co8292327.1_g000001 Rmu_sc0028465.1_g000001 Rmu_sc0028466.1_g000001 Rmu_ssc0000112.1_g000032
rosa_roxburghii	Rroxscaffold_4G00291710 Rroxscaffold_4G00291720 Rroxscaffold_4G00292120 Rroxscaffold_4G00292130 Rroxscaffold_4G00292150
rosa_rugosa	Rorug01G0318300 Rorug01G0318500
rosa_samantha	Rh1AG327100 Rh1BG288200 Rh1BG288300 Rh1CG304900 Rh1CG305000 Rh1DG319900
rosa_wichuraiana	Rw1G028970 Rw1G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
AccI	GTMKAC	2 cut(s)	696, 771
AciI	CCGC	2 cut(s)	334, 668
AclWI	GGATC	3 cut(s)	42, 548, 561
AcoI	YGGCCR	2 cut(s)	688, 723
AcsI	RAATTY	1 cut(s)	440
AfaI	GTAC	4 cut(s)	249, 310, 364, 379
AfiI	CCNNNNNNNGG	3 cut(s)	139, 162, 761
AgsI	TTSAA	5 cut(s)	104, 125, 230, 398, 433
AjnI	CCWGG	3 cut(s)	161, 417, 711
AluBI	AGCT	7 cut(s)	128, 220, 254, 272, 353, 583, 625
AluI	AGCT	7 cut(s)	128, 220, 254, 272, 353, 583, 625
AlwI	GGATC	3 cut(s)	42, 548, 561
AoxI	GGCC	4 cut(s)	148, 688, 708, 723
ApeKI	GCWGC	2 cut(s)	331, 610
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	149, 709
AsuHPI	GGTGA	2 cut(s)	776, 802
AsuNHI	GCTAGC	1 cut(s)	583
BalI	TGGCCA	1 cut(s)	725
BamHI	GGATCC	1 cut(s)	553
BbvI	GCAGC	2 cut(s)	343, 622
BccI	CCATC	2 cut(s)	646, 731
BceAI	ACGGC	2 cut(s)	675, 703
BciT130I	CCWGG	3 cut(s)	163, 419, 713
BfaI	CTAG	2 cut(s)	158, 584
BfmI	CTRYAG	1 cut(s)	697
BglII	AGATCT	1 cut(s)	784
BisI	GCNGC	2 cut(s)	332, 611
BlsI	GCNGC	2 cut(s)	333, 612
BmcAI	AGTACT	1 cut(s)	364
Bme1390I	CCNGG	3 cut(s)	163, 419, 713
BmgT120I	GGNCC	2 cut(s)	149, 709
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	3 cut(s)	163, 419, 713
BmsI	GCATC	1 cut(s)	622
BmtI	GCTAGC	1 cut(s)	587
BpmI	CTGGAG	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	488
Bsa29I	ATCGAT	1 cut(s)	93
BsaJI	CCNNGG	4 cut(s)	302, 546, 711, 755
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 162, 761
BseBI	CCWGG	3 cut(s)	163, 419, 713
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	4 cut(s)	302, 546, 711, 755
BseLI	CCNNNNNNNGG	3 cut(s)	139, 162, 761
BseMII	CTCAG	1 cut(s)	162
BseX3I	CGGCCG	1 cut(s)	688
BseXI	GCAGC	2 cut(s)	343, 622
Bsh1285I	CGRYCG	1 cut(s)	691
BshFI	GGCC	4 cut(s)	150, 690, 710, 725
BshVI	ATCGAT	1 cut(s)	93
BsiEI	CGRYCG	1 cut(s)	691
BslI	CCNNNNNNNGG	3 cut(s)	139, 162, 761
BsnI	GGCC	4 cut(s)	150, 690, 710, 725
Bsp143I	GATC	4 cut(s)	34, 79, 553, 784
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	2 cut(s)	334, 668
BspANI	GGCC	4 cut(s)	150, 690, 710, 725
BspCNI	CTCAG	1 cut(s)	163
BspDI	ATCGAT	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	806
BspLI	GGNNCC	1 cut(s)	555
BspOI	GCTAGC	1 cut(s)	587
BspPI	GGATC	3 cut(s)	42, 548, 561
BssECI	CCNNGG	4 cut(s)	302, 546, 711, 755
BssMI	GATC	4 cut(s)	34, 79, 553, 784
BssT1I	CCWWGG	2 cut(s)	302, 546
Bst2UI	CCWGG	3 cut(s)	163, 419, 713
Bst4CI	ACNGT	2 cut(s)	349, 561
BstC8I	GCNNGC	2 cut(s)	495, 585
BstDEI	CTNAG	5 cut(s)	171, 221, 606, 642, 705
BstDSI	CCRYGG	1 cut(s)	302
BstKTI	GATC	4 cut(s)	37, 82, 556, 787
BstMBI	GATC	4 cut(s)	34, 79, 553, 784
BstMCI	CGRYCG	1 cut(s)	691
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 589
BstNI	CCWGG	3 cut(s)	163, 419, 713
BstSCI	CCNGG	3 cut(s)	161, 417, 711
BstSFI	CTRYAG	1 cut(s)	697
BstV1I	GCAGC	2 cut(s)	343, 622
BstX2I	RGATCY	2 cut(s)	553, 784
BstXI	CCANNNNNNTGG	1 cut(s)	408
BstYI	RGATCY	2 cut(s)	553, 784
BstZI	CGGCCG	1 cut(s)	688
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	4 cut(s)	150, 690, 710, 725
BsuTUI	ATCGAT	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	557
Cac8I	GCNNGC	2 cut(s)	495, 585
CciI	TCATGA	1 cut(s)	806
Cfr13I	GGNCC	2 cut(s)	149, 709
ClaI	ATCGAT	1 cut(s)	93
CsiI	ACCWGGT	1 cut(s)	417
Csp6I	GTAC	4 cut(s)	248, 309, 363, 378
CviAII	CATG	3 cut(s)	303, 460, 807
CviQI	GTAC	4 cut(s)	248, 309, 363, 378
DdeI	CTNAG	5 cut(s)	171, 221, 606, 642, 705
DpnI	GATC	4 cut(s)	36, 81, 555, 786
DpnII	GATC	4 cut(s)	34, 79, 553, 784
EaeI	YGGCCR	2 cut(s)	688, 723
EagI	CGGCCG	1 cut(s)	688
EciI	GGCGGA	1 cut(s)	657
EclXI	CGGCCG	1 cut(s)	688
Eco130I	CCWWGG	2 cut(s)	302, 546
Eco32I	GATATC	1 cut(s)	91
Eco52I	CGGCCG	1 cut(s)	688
EcoO109I	RGGNCCY	2 cut(s)	149, 709
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	3 cut(s)	161, 417, 711
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	302, 546
ErhI	CCWWGG	2 cut(s)	302, 546
FaeI	CATG	3 cut(s)	306, 463, 810
FatI	CATG	3 cut(s)	302, 459, 806
FauI	CCCGC	1 cut(s)	327
FauNDI	CATATG	1 cut(s)	280
FblI	GTMKAC	2 cut(s)	696, 771
Fnu4HI	GCNGC	2 cut(s)	332, 611
Fsp4HI	GCNGC	2 cut(s)	332, 611
FspBI	CTAG	2 cut(s)	158, 584
GluI	GCNGC	2 cut(s)	332, 611
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	4 cut(s)	150, 690, 710, 725
Hin1II	CATG	3 cut(s)	306, 463, 810
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	1 cut(s)	501
HphI	GGTGA	2 cut(s)	776, 802
Hpy166II	GTNNAC	3 cut(s)	424, 697, 772
Hpy188I	TCNGA	2 cut(s)	513, 756
Hpy188III	TCNNGA	4 cut(s)	104, 133, 230, 807
Hpy8I	GTNNAC	3 cut(s)	424, 697, 772
HpyAV	CCTTC	2 cut(s)	563, 787
HpyCH4III	ACNGT	2 cut(s)	349, 561
HpyCH4V	TGCA	5 cut(s)	299, 331, 447, 493, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 589
HpyF3I	CTNAG	5 cut(s)	171, 221, 606, 642, 705
Hsp92II	CATG	3 cut(s)	306, 463, 810
Kzo9I	GATC	4 cut(s)	34, 79, 553, 784
Lsp1109I	GCAGC	2 cut(s)	343, 622
LweI	GCATC	1 cut(s)	622
MabI	ACCWGGT	1 cut(s)	417
MaeI	CTAG	2 cut(s)	158, 584
MaeIII	GTNAC	2 cut(s)	343, 561
MalI	GATC	4 cut(s)	36, 81, 555, 786
MboI	GATC	4 cut(s)	34, 79, 553, 784
MboII	GAAGA	3 cut(s)	545, 728, 742
MflI	RGATCY	2 cut(s)	553, 784
MlsI	TGGCCA	1 cut(s)	725
MluCI	AATT	6 cut(s)	38, 206, 326, 428, 440, 744
MluNI	TGGCCA	1 cut(s)	725
MlyI	GAGTC	1 cut(s)	495
MnlI	CCTC	6 cut(s)	4, 136, 483, 544, 750, 760
Mox20I	TGGCCA	1 cut(s)	725
MscI	TGGCCA	1 cut(s)	725
MseI	TTAA	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	725
MspA1I	CMGCKG	1 cut(s)	334
MspR9I	CCNGG	3 cut(s)	163, 419, 713
MvaI	CCWGG	3 cut(s)	163, 419, 713
MwoI	GCNNNNNNNGC	2 cut(s)	167, 589
NcoI	CCATGG	1 cut(s)	302
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	4 cut(s)	34, 79, 553, 784
NheI	GCTAGC	1 cut(s)	583
NlaIII	CATG	3 cut(s)	306, 463, 810
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	561
PagI	TCATGA	1 cut(s)	806
PkrI	GCNGC	2 cut(s)	333, 612
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
PsiI	TTATAA	1 cut(s)	357
Psp6I	CCWGG	3 cut(s)	161, 417, 711
PspGI	CCWGG	3 cut(s)	161, 417, 711
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	2 cut(s)	149, 709
PsuI	RGATCY	2 cut(s)	553, 784
RsaI	GTAC	4 cut(s)	249, 310, 364, 379
RsaNI	GTAC	4 cut(s)	248, 309, 363, 378
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	2 cut(s)	332, 611
Sau3AI	GATC	4 cut(s)	34, 79, 553, 784
Sau96I	GGNCC	2 cut(s)	149, 709
ScaI	AGTACT	1 cut(s)	364
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	3 cut(s)	163, 419, 713
SexAI	ACCWGGT	1 cut(s)	417
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	1 cut(s)	697
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	6 cut(s)	38, 206, 326, 428, 440, 744
SsiI	CCGC	2 cut(s)	334, 668
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	2 cut(s)	158, 584
StyD4I	CCNGG	3 cut(s)	161, 417, 711
StyI	CCWWGG	2 cut(s)	302, 546
TaaI	ACNGT	2 cut(s)	349, 561
TaqI	TCGA	1 cut(s)	93
TasI	AATT	6 cut(s)	38, 206, 326, 428, 440, 744
TatI	WGTACW	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	1 cut(s)	564
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	2 cut(s)	331, 610
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	2 cut(s)	335, 546
TspGWI	ACGGA	2 cut(s)	566, 674
TspRI	CASTG	1 cut(s)	564
XapI	RAATTY	1 cut(s)	440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XmiI	GTMKAC	2 cut(s)	696, 771
XspI	CTAG	2 cut(s)	158, 584
ZrmI	AGTACT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.