Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003326

Physical Location & Seq

Genomic Coordinates Reverse (-)

12526308 .. 12527594

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTTTCAAGCTACGGACGAAGCCCTGTTAAAAGCAATCTCTGAGCGTCTGAAGCCAGTGACCTACACTGATGGGATGTATATAATCAAAAAGGATGAACCACTTCAGTTGATGTTCTTCGTCCTAGCCGGATATGTAGTCACCGAAAGTTATCCTCATTTTGTTGTTCGTATAGGAGAATTTTGTGGACAAGAACTTCTAGATTGGCCATCCACTACCTCATTTCCTATGGAATTTCCCACAGCACTCGAGTCTGCTAGGGCCAATGGTGATGTTAGAGTCCTTGCTCTGATGTTGGAAGACTGGGTGAGTGTAGTCAATAGATTTGAGTTTGGCAAACACAAGAGGAGAATTAAGCTGGCGGTGGAAAAGAAGAGTAAAGAGGTATATCATTCTCGCGATGGGGAACCACTTGAAAAGATGATATTCATTGTTGAGGGGGATCTAGGTGTTGAAAGAAGAAACTCTGCTACTCGGGACCTTTTATATGAAGGAGACTTCTATGGAGAGGAACTTGTACATTGGGTATCAGTATCACATACATCTTTTCCTGCCAGATTACCCTTATCAGTCGATTCTGCTTATGTCACCAACAATGATAGCATCCTTATTCTCATGGCTGACGACTTGAAGAGTGTAGTATCCAAGTTCAGGTTGCACTTCAGCAAGGAGATAACCCTTCCACCTGATACTCAGCCAGAGCTTCTGAGATCTGTTCAGTTGACTATGCTAAAGAAAGTAAGTACCTCTATCTGGAGAACAACTCCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans Pkinase_Tyr cNMP_binding

Protein Analysis

257

Amino Acids

29.4

Weight (kDa)

5.75

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55070 AT3G55070
fragaria_vesca	FvH4_7g20680 FvH4_7g20680 FvH4_7g20680
malus_domestica	MD01G1115200.v1.1 MD01G1115600.v1.1 MD07G1183500.v1.1
prunus_persica	Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1
pyrus_communis	pycom01g14420 pycom07g17610
rosa_chinensis	RchiOBHm_Chr1g0364711 RchiOBHm_Chr1g0364821 RchiOBHm_Chr1g0364831
rosa_laevigata	RLG00000027464
rosa_multiflora	Rmu_co8292327.1_g000001 Rmu_sc0028465.1_g000001 Rmu_sc0028466.1_g000001 Rmu_ssc0000112.1_g000032
rosa_roxburghii	Rroxscaffold_4G00291710 Rroxscaffold_4G00291720 Rroxscaffold_4G00292120 Rroxscaffold_4G00292130 Rroxscaffold_4G00292150
rosa_rugosa	Rorug01G0318300 Rorug01G0318500
rosa_samantha	Rh1AG327100 Rh1BG288200 Rh1BG288300 Rh1CG304900 Rh1CG305000 Rh1DG319900
rosa_wichuraiana	Rw1G028970 Rw1G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	399
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	1 cut(s)	450
AcoI	YGGCCR	1 cut(s)	206
AcsI	RAATTY	2 cut(s)	179, 233
AcuI	CTGAAG	3 cut(s)	71, 89, 646
AfaI	GTAC	2 cut(s)	519, 745
AfiI	CCNNNNNNNGG	2 cut(s)	651, 753
AgsI	TTSAA	4 cut(s)	8, 416, 455, 631
AluBI	AGCT	3 cut(s)	11, 358, 703
AluI	AGCT	3 cut(s)	11, 358, 703
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	1 cut(s)	450
Ama87I	CYCGRG	2 cut(s)	248, 474
AoxI	GGCC	2 cut(s)	206, 261
ApoI	RAATTY	2 cut(s)	179, 233
Asp700I	GAANNNNTTC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	261, 478
AsuHPI	GGTGA	4 cut(s)	133, 281, 319, 580
AvaI	CYCGRG	2 cut(s)	248, 474
AvaII	GGWCC	1 cut(s)	478
BalI	TGGCCA	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	306
BccI	CCATC	3 cut(s)	65, 217, 395
BciVI	GTATCC	1 cut(s)	652
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	4 cut(s)	125, 200, 258, 446
BfuI	GTATCC	1 cut(s)	652
BglII	AGATCT	1 cut(s)	710
Bme18I	GGWCC	1 cut(s)	478
BmeT110I	CYCGRG	2 cut(s)	248, 474
BmgT120I	GGNCC	2 cut(s)	261, 478
BmiI	GGNNCC	2 cut(s)	408, 479
BmrI	ACTGGG	1 cut(s)	313
BmsI	GCATC	1 cut(s)	612
BmuI	ACTGGG	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	306
BplI	GAGNNNNNCTC	1 cut(s)	748
Bsc4I	CCNNNNNNNGG	2 cut(s)	651, 753
Bse1I	ACTGG	2 cut(s)	56, 308
BseGI	GGATG	4 cut(s)	81, 100, 209, 603
BseLI	CCNNNNNNNGG	2 cut(s)	651, 753
BseMII	CTCAG	3 cut(s)	33, 698, 707
BseNI	ACTGG	2 cut(s)	56, 308
BseRI	GAGGAG	1 cut(s)	361
Bsh1236I	CGCG	1 cut(s)	399
BshFI	GGCC	2 cut(s)	208, 263
BsiHKCI	CYCGRG	2 cut(s)	248, 474
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	2 cut(s)	651, 753
BsmAI	GTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	491
BsnI	GGCC	2 cut(s)	208, 263
BsoBI	CYCGRG	2 cut(s)	248, 474
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	2 cut(s)	442, 710
Bsp68I	TCGCGA	1 cut(s)	399
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	2 cut(s)	208, 263
BspCNI	CTCAG	3 cut(s)	34, 699, 706
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	408, 479
BspPI	GGATC	1 cut(s)	450
BsrGI	TGTACA	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	56, 308
BssMI	GATC	2 cut(s)	442, 710
Bst6I	CTCTTC	2 cut(s)	368, 626
BstAUI	TGTACA	1 cut(s)	517
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	3 cut(s)	42, 693, 707
BstF5I	GGATG	4 cut(s)	81, 100, 209, 603
BstFNI	CGCG	1 cut(s)	399
BstKTI	GATC	2 cut(s)	445, 713
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	2 cut(s)	442, 710
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstUI	CGCG	1 cut(s)	399
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	2 cut(s)	442, 710
BstYI	RGATCY	2 cut(s)	442, 710
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	2 cut(s)	208, 263
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	4 cut(s)	81, 100, 209, 603
BtsIMutI	CAGTG	2 cut(s)	63, 66
BtuMI	TCGCGA	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	360
Cfr13I	GGNCC	2 cut(s)	261, 478
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	518, 744
CspCI	CAANNNNNGTGG	2 cut(s)	90, 125
CviAII	CATG	1 cut(s)	616
CviQI	GTAC	2 cut(s)	518, 744
DdeI	CTNAG	3 cut(s)	42, 693, 707
DpnI	GATC	2 cut(s)	444, 712
DpnII	GATC	2 cut(s)	442, 710
EaeI	YGGCCR	1 cut(s)	206
Eam1104I	CTCTTC	2 cut(s)	368, 626
EarI	CTCTTC	2 cut(s)	368, 626
Eco47I	GGWCC	1 cut(s)	478
Eco57I	CTGAAG	3 cut(s)	71, 89, 646
Eco88I	CYCGRG	2 cut(s)	248, 474
EcoO109I	RGGNCCY	1 cut(s)	478
FaeI	CATG	1 cut(s)	619
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	1 cut(s)	615
FokI	GGATG	4 cut(s)	88, 107, 196, 590
FspBI	CTAG	4 cut(s)	125, 200, 258, 446
HaeIII	GGCC	2 cut(s)	208, 263
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	619
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HinfI	GANTC	3 cut(s)	251, 279, 575
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	4 cut(s)	133, 281, 319, 580
Hpy166II	GTNNAC	2 cut(s)	188, 723
Hpy188I	TCNGA	4 cut(s)	43, 51, 291, 708
Hpy188III	TCNNGA	4 cut(s)	200, 398, 476, 754
Hpy8I	GTNNAC	2 cut(s)	188, 723
HpyAV	CCTTC	2 cut(s)	485, 689
HpyCH4V	TGCA	1 cut(s)	658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	3 cut(s)	42, 693, 707
Hsp92II	CATG	1 cut(s)	619
Kzo9I	GATC	2 cut(s)	442, 710
LweI	GCATC	1 cut(s)	612
MaeI	CTAG	4 cut(s)	125, 200, 258, 446
MaeIII	GTNAC	3 cut(s)	58, 139, 586
MalI	GATC	2 cut(s)	444, 712
MboI	GATC	2 cut(s)	442, 710
MboII	GAAGA	5 cut(s)	109, 311, 385, 471, 643
MflI	RGATCY	2 cut(s)	442, 710
MlsI	TGGCCA	1 cut(s)	208
MluCI	AATT	3 cut(s)	179, 233, 351
MluNI	TGGCCA	1 cut(s)	208
MlyI	GAGTC	2 cut(s)	260, 288
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	7 cut(s)	165, 229, 339, 376, 430, 502, 757
Mox20I	TGGCCA	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	208
MseI	TTAA	2 cut(s)	29, 354
Msp20I	TGGCCA	1 cut(s)	208
MspI	CCGG	1 cut(s)	129
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	2 cut(s)	442, 710
NlaIII	CATG	1 cut(s)	619
NlaIV	GGNNCC	2 cut(s)	408, 479
NmuCI	GTSAC	3 cut(s)	58, 139, 586
NruI	TCGCGA	1 cut(s)	399
PaeR7I	CTCGAG	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	575
PleI	GAGTC	2 cut(s)	259, 287
PpsI	GAGTC	2 cut(s)	259, 287
PpuMI	RGGWCCY	1 cut(s)	478
Psp5II	RGGWCCY	1 cut(s)	478
PspN4I	GGNNCC	2 cut(s)	408, 479
PspPI	GGNCC	2 cut(s)	261, 478
PspPPI	RGGWCCY	1 cut(s)	478
PspXI	VCTCGAGB	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	442, 710
RruI	TCGCGA	1 cut(s)	399
RsaI	GTAC	2 cut(s)	519, 745
RsaNI	GTAC	2 cut(s)	518, 744
SaqAI	TTAA	2 cut(s)	29, 354
Sau3AI	GATC	2 cut(s)	442, 710
Sau96I	GGNCC	2 cut(s)	261, 478
SchI	GAGTC	2 cut(s)	260, 288
SfaNI	GCATC	1 cut(s)	612
Sfr274I	CTCGAG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	478
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	3 cut(s)	179, 233, 351
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	4 cut(s)	125, 200, 258, 446
TaqI	TCGA	2 cut(s)	249, 573
TasI	AATT	3 cut(s)	179, 233, 351
TatI	WGTACW	1 cut(s)	517
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	2 cut(s)	29, 354
Tru9I	TTAA	2 cut(s)	29, 354
TscAI	CASTG	2 cut(s)	63, 73
TseFI	GTSAC	3 cut(s)	58, 139, 586
Tsp45I	GTSAC	3 cut(s)	58, 139, 586
TspDTI	ATGAA	3 cut(s)	111, 418, 504
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	63, 73
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	2 cut(s)	179, 233
XbaI	TCTAGA	1 cut(s)	199
XhoI	CTCGAG	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	4 cut(s)	125, 200, 258, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.