Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003326

Physical Location & Seq

Genomic Coordinates Forward (+)

14585812 .. 14588770

Gene Structure 2959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14420.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGAAATCGATTCCCTCCCCAACGGTACCGCCGCGTCGCCGGGACCGACCCTAGGACCCGTCCCCACCGCCGCAACCCCTCCTCCTTCCTCGAAACTGAGCCACCTCGCCGACTCCCTGAAGCTGGAGCACCAGTTCCTCAGAGTCCCCTTCGAGCACTACAAGAAGACGATCCGCACCAACCACCGCGTCATGGAGAAGGAGATTTCCTCCGTTATTAACGGCGTCTCCGAAGCCGCTGACCGGGACAACATGTCGTCGGACGACGCCGTGAATCATCTCAGCTCCCTCGTTTCCAGGCTGCAGGGGCTTAAACGAAAGTTGGAAGAGGGGAGTAAGACGGAGCACTTGCAGGCGCAGAGGTGCCGGGCTCGGCTTGATCATTTAGAATCGGCAGATGTGGAGAGTCTGTCTGAATGGAATGACACACGTGTGAACCGGATACTTGTGGACTACATGTTGCGGATGTCTTATTATGATACGGCAGTGAAGCTGGCAGAAAGCAGAAATATTCAGGATTTTGTTGATATTGATGTATTCCAAGAAGCAAAAAAGGTTATTGAAGCCCTTCAGAATAAGGAGGTAGGCCCTGCCCTAGCCTGGTGTGCCGAGAACAAGTCACGGTTAAAGAAATCCAAGAGTAAATTCGAGTTTCAGCTGAGACTTCAAGAGTTTATAGAGTTGGTACGAGCTGAAAAAAACTTGCGAGCGATCACATATGCTCAAAAGTACCTAGCACCATGGGGAACTACTCATATGAAAGAATTCCAGCGGGTCTTTGTAACAGTAGCTTATAAGAGTACTACAGAATGTGCTCCCAAGAGTTTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0034657 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLTH

Protein Analysis

278

Amino Acids

31.47

Weight (kDa)

8.62

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55070 AT3G55070
fragaria_vesca	FvH4_7g20680 FvH4_7g20680 FvH4_7g20680
malus_domestica	MD01G1115200.v1.1 MD01G1115600.v1.1 MD07G1183500.v1.1
prunus_persica	Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1
pyrus_communis	pycom01g14420 pycom07g17610
rosa_chinensis	RchiOBHm_Chr1g0364711 RchiOBHm_Chr1g0364821 RchiOBHm_Chr1g0364831
rosa_laevigata	RLG00000027464
rosa_multiflora	Rmu_co8292327.1_g000001 Rmu_sc0028465.1_g000001 Rmu_sc0028466.1_g000001 Rmu_ssc0000112.1_g000032
rosa_roxburghii	Rroxscaffold_4G00291710 Rroxscaffold_4G00291720 Rroxscaffold_4G00292120 Rroxscaffold_4G00292130 Rroxscaffold_4G00292150
rosa_rugosa	Rorug01G0318300 Rorug01G0318500
rosa_samantha	Rh1AG327100 Rh1BG288200 Rh1BG288300 Rh1CG304900 Rh1CG305000 Rh1DG319900
rosa_wichuraiana	Rw1G028970 Rw1G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	2 cut(s)	26, 363
AccII	CGCG	2 cut(s)	35, 189
AciI	CCGC	9 cut(s)	30, 33, 69, 72, 175, 187, 237, 463, 772
AclWI	GGATC	1 cut(s)	166
AcsI	RAATTY	2 cut(s)	644, 764
AcuI	CTGAAG	2 cut(s)	140, 554
AcvI	CACGTG	1 cut(s)	431
AcyI	GRCGYC	2 cut(s)	225, 267
AfaI	GTAC	4 cut(s)	28, 687, 731, 802
AfiI	CCNNNNNNNGG	5 cut(s)	53, 124, 193, 243, 600
AflIII	ACRYGT	4 cut(s)	252, 428, 430, 456
AgsI	TTSAA	2 cut(s)	563, 668
AhdI	GACNNNNNGTC	1 cut(s)	253
AjnI	CCWGG	2 cut(s)	296, 599
AjuI	GAANNNNNNNTTGG	2 cut(s)	629, 661
AleI	CACNNNNGTG	1 cut(s)	431
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	6 cut(s)	124, 285, 493, 658, 692, 791
AluI	AGCT	6 cut(s)	124, 285, 493, 658, 692, 791
Alw21I	GWGCWC	4 cut(s)	132, 159, 348, 817
Alw26I	GTCTC	2 cut(s)	232, 655
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	586
ApeKI	GCWGC	1 cut(s)	301
ApoI	RAATTY	2 cut(s)	644, 764
Asp700I	GAANNNNTTC	2 cut(s)	567, 764
Asp718I	GGTACC	1 cut(s)	26
AspA2I	CCTAGG	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	3 cut(s)	44, 56, 587
AsuC2I	CCSGG	3 cut(s)	42, 245, 368
AvaII	GGWCC	2 cut(s)	44, 56
AvrII	CCTAGG	1 cut(s)	52
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BanI	GGYRCC	2 cut(s)	26, 363
BanII	GRGCYC	1 cut(s)	373
BbrPI	CACGTG	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	4 cut(s)	132, 159, 348, 817
BbvI	GCAGC	1 cut(s)	288
BceAI	ACGGC	3 cut(s)	238, 254, 498
BciT130I	CCWGG	2 cut(s)	298, 601
BciVI	GTATCC	1 cut(s)	435
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	3 cut(s)	42, 245, 368
BcoDI	GTCTC	2 cut(s)	232, 655
BfaI	CTAG	3 cut(s)	53, 596, 734
BfmI	CTRYAG	2 cut(s)	302, 804
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	4 cut(s)	33, 72, 237, 302
BlnI	CCTAGG	1 cut(s)	52
BlsI	GCNGC	4 cut(s)	34, 73, 238, 303
BmcAI	AGTACT	1 cut(s)	802
Bme1390I	CCNGG	5 cut(s)	42, 245, 298, 368, 601
Bme18I	GGWCC	2 cut(s)	44, 56
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmgT120I	GGNCC	3 cut(s)	44, 56, 587
BmiI	GGNNCC	4 cut(s)	28, 45, 58, 365
BmrFI	CCNGG	5 cut(s)	42, 245, 298, 368, 601
BpiI	GAAGAC	1 cut(s)	173
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpmI	CTGGAG	1 cut(s)	146
BpuMI	CCSGG	3 cut(s)	42, 245, 368
Bsa29I	ATCGAT	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	431
BsaHI	GRCGYC	2 cut(s)	225, 267
BsaJI	CCNNGG	2 cut(s)	52, 740
BsaWI	WCCGGW	1 cut(s)	438
BsaXI	ACNNNNNCTCC	8 cut(s)	67, 97, 119, 149, 212, 242, 395, 425
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 124, 193, 243, 600
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	2 cut(s)	298, 601
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	52, 740
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	5 cut(s)	53, 124, 193, 243, 600
BseMII	CTCAG	4 cut(s)	89, 154, 295, 650
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	288
Bsh1236I	CGCG	2 cut(s)	35, 189
BshFI	GGCC	1 cut(s)	588
BshNI	GGYRCC	2 cut(s)	26, 363
BshVI	ATCGAT	1 cut(s)	9
BsiHKAI	GWGCWC	4 cut(s)	132, 159, 348, 817
BsiSI	CCGG	4 cut(s)	41, 244, 367, 439
BslFI	GGGAC	4 cut(s)	47, 57, 131, 260
BslI	CCNNNNNNNGG	5 cut(s)	53, 124, 193, 243, 600
BsmAI	GTCTC	2 cut(s)	232, 655
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	4 cut(s)	47, 57, 131, 260
BsnI	GGCC	1 cut(s)	588
Bsp1286I	GDGCHC	5 cut(s)	132, 159, 348, 373, 817
Bsp143I	GATC	3 cut(s)	171, 379, 711
Bsp19I	CCATGG	1 cut(s)	740
BspACI	CCGC	9 cut(s)	30, 33, 69, 72, 175, 187, 237, 463, 772
BspANI	GGCC	1 cut(s)	588
BspCNI	CTCAG	4 cut(s)	90, 153, 294, 651
BspDI	ATCGAT	1 cut(s)	9
BspFNI	CGCG	2 cut(s)	35, 189
BspLI	GGNNCC	4 cut(s)	28, 45, 58, 365
BspMAI	CTGCAG	1 cut(s)	306
BspPI	GGATC	1 cut(s)	166
BspT107I	GGYRCC	2 cut(s)	26, 363
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	52, 740
BssMI	GATC	3 cut(s)	171, 379, 711
BssNI	GRCGYC	2 cut(s)	225, 267
BssT1I	CCWWGG	2 cut(s)	52, 740
Bst2UI	CCWGG	2 cut(s)	298, 601
Bst4CI	ACNGT	3 cut(s)	26, 624, 787
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	2 cut(s)	225, 267
BstBAI	YACGTR	1 cut(s)	431
BstC8I	GCNNGC	3 cut(s)	354, 495, 708
BstDEI	CTNAG	4 cut(s)	98, 140, 281, 659
BstDSI	CCRYGG	1 cut(s)	740
BstF5I	GGATG	1 cut(s)	471
BstFNI	CGCG	2 cut(s)	35, 189
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	3 cut(s)	174, 382, 714
BstMAI	GTCTC	2 cut(s)	232, 655
BstMBI	GATC	3 cut(s)	171, 379, 711
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 605
BstNI	CCWGG	2 cut(s)	298, 601
BstNSI	RCATGY	2 cut(s)	256, 460
BstSCI	CCNGG	5 cut(s)	40, 243, 296, 366, 599
BstSFI	CTRYAG	2 cut(s)	302, 804
BstUI	CGCG	2 cut(s)	35, 189
BstV1I	GCAGC	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	173
Bsu15I	ATCGAT	1 cut(s)	9
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	588
BsuTUI	ATCGAT	1 cut(s)	9
BtgI	CCRYGG	1 cut(s)	740
BtsCI	GGATG	1 cut(s)	471
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	3 cut(s)	354, 495, 708
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	44, 56, 587
ClaI	ATCGAT	1 cut(s)	9
CseI	GACGC	4 cut(s)	24, 178, 214, 275
Csp6I	GTAC	4 cut(s)	27, 686, 730, 801
CviAII	CATG	4 cut(s)	193, 253, 457, 741
CviQI	GTAC	4 cut(s)	27, 686, 730, 801
DdeI	CTNAG	4 cut(s)	98, 140, 281, 659
DpnI	GATC	3 cut(s)	173, 381, 713
DpnII	GATC	3 cut(s)	171, 379, 711
DriI	GACNNNNNGTC	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	321
Eam1105I	GACNNNNNGTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	52, 740
Eco24I	GRGCYC	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	44, 56
Eco57I	CTGAAG	2 cut(s)	140, 554
Eco72I	CACGTG	1 cut(s)	431
EcoO109I	RGGNCCY	2 cut(s)	56, 587
EcoRI	GAATTC	1 cut(s)	764
EcoRII	CCWGG	2 cut(s)	296, 599
EcoT14I	CCWWGG	2 cut(s)	52, 740
EcoT38I	GRGCYC	1 cut(s)	373
ErhI	CCWWGG	2 cut(s)	52, 740
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	4 cut(s)	196, 256, 460, 744
FaqI	GGGAC	4 cut(s)	47, 57, 131, 260
FatI	CATG	4 cut(s)	192, 252, 456, 740
FauI	CCCGC	1 cut(s)	765
FauNDI	CATATG	2 cut(s)	718, 756
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	4 cut(s)	33, 72, 237, 302
FokI	GGATG	1 cut(s)	478
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	4 cut(s)	33, 72, 237, 302
FspBI	CTAG	3 cut(s)	53, 596, 734
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	4 cut(s)	33, 72, 237, 302
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	588
HapII	CCGG	4 cut(s)	41, 244, 367, 439
HgaI	GACGC	4 cut(s)	24, 178, 214, 275
HhaI	GCGC	1 cut(s)	358
Hin1I	GRCGYC	2 cut(s)	225, 267
Hin1II	CATG	4 cut(s)	196, 256, 460, 744
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	6 cut(s)	11, 113, 144, 274, 389, 406
HpaII	CCGG	4 cut(s)	41, 244, 367, 439
Hpy166II	GTNNAC	2 cut(s)	436, 451
Hpy188I	TCNGA	5 cut(s)	143, 232, 262, 415, 573
Hpy188III	TCNNGA	2 cut(s)	515, 668
Hpy8I	GTNNAC	2 cut(s)	436, 451
Hpy99I	CGWCG	3 cut(s)	40, 262, 269
HpyAV	CCTTC	4 cut(s)	96, 160, 193, 578
HpyCH4III	ACNGT	3 cut(s)	26, 624, 787
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	2 cut(s)	304, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 605
HpyF3I	CTNAG	4 cut(s)	98, 140, 281, 659
HpySE526I	ACGT	1 cut(s)	430
Hsp92I	GRCGYC	2 cut(s)	225, 267
Hsp92II	CATG	4 cut(s)	196, 256, 460, 744
HspAI	GCGC	1 cut(s)	356
KpnI	GGTACC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	3 cut(s)	171, 379, 711
LmnI	GCTCC	4 cut(s)	127, 290, 343, 820
Lsp1109I	GCAGC	1 cut(s)	288
MaeI	CTAG	3 cut(s)	53, 596, 734
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	2 cut(s)	618, 781
MalI	GATC	3 cut(s)	173, 381, 713
MboI	GATC	3 cut(s)	171, 379, 711
MboII	GAAGA	2 cut(s)	178, 338
MhlI	GDGCHC	5 cut(s)	132, 159, 348, 373, 817
MluCI	AATT	2 cut(s)	644, 764
MlyI	GAGTC	3 cut(s)	107, 153, 415
MmeI	TCCRAC	2 cut(s)	240, 303
MroXI	GAANNNNTTC	2 cut(s)	567, 764
MseI	TTAA	3 cut(s)	219, 312, 626
MslI	CAYNNNNRTG	1 cut(s)	431
MspA1I	CMGCKG	3 cut(s)	239, 658, 772
MspI	CCGG	4 cut(s)	41, 244, 367, 439
MspR9I	CCNGG	5 cut(s)	42, 245, 298, 368, 601
MvaI	CCWGG	2 cut(s)	298, 601
MvnI	CGCG	2 cut(s)	35, 189
MwoI	GCNNNNNNNGC	2 cut(s)	307, 605
NciI	CCSGG	3 cut(s)	42, 245, 368
NcoI	CCATGG	1 cut(s)	740
NdeI	CATATG	2 cut(s)	718, 756
NdeII	GATC	3 cut(s)	171, 379, 711
NlaIII	CATG	4 cut(s)	196, 256, 460, 744
NlaIV	GGNNCC	4 cut(s)	28, 45, 58, 365
NmeAIII	GCCGAG	2 cut(s)	352, 634
NmuCI	GTSAC	1 cut(s)	618
NspI	RCATGY	2 cut(s)	256, 460
OliI	CACNNNNGTG	1 cut(s)	431
PciI	ACATGT	2 cut(s)	252, 456
PcsI	WCGNNNNNNNCGW	2 cut(s)	44, 228
PdmI	GAANNNNTTC	2 cut(s)	567, 764
PfeI	GAWTC	3 cut(s)	11, 274, 389
PkrI	GCNGC	4 cut(s)	34, 73, 238, 303
PleI	GAGTC	3 cut(s)	107, 152, 414
PmaCI	CACGTG	1 cut(s)	431
PmlI	CACGTG	1 cut(s)	431
PpsI	GAGTC	3 cut(s)	107, 152, 414
Ppu21I	YACGTR	1 cut(s)	431
PpuMI	RGGWCCY	1 cut(s)	56
PscI	ACATGT	2 cut(s)	252, 456
PsiI	TTATAA	1 cut(s)	795
Psp5II	RGGWCCY	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	296, 599
PspCI	CACGTG	1 cut(s)	431
PspGI	CCWGG	2 cut(s)	296, 599
PspN4I	GGNNCC	4 cut(s)	28, 45, 58, 365
PspPI	GGNCC	3 cut(s)	44, 56, 587
PspPPI	RGGWCCY	1 cut(s)	56
PstI	CTGCAG	1 cut(s)	306
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	4 cut(s)	28, 687, 731, 802
RsaNI	GTAC	4 cut(s)	27, 686, 730, 801
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	219, 312, 626
SatI	GCNGC	4 cut(s)	33, 72, 237, 302
Sau3AI	GATC	3 cut(s)	171, 379, 711
Sau96I	GGNCC	3 cut(s)	44, 56, 587
ScaI	AGTACT	1 cut(s)	802
SchI	GAGTC	3 cut(s)	107, 153, 415
ScrFI	CCNGG	5 cut(s)	42, 245, 298, 368, 601
SduI	GDGCHC	5 cut(s)	132, 159, 348, 373, 817
SfcI	CTRYAG	2 cut(s)	302, 804
SinI	GGWCC	2 cut(s)	44, 56
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	2 cut(s)	644, 764
SsiI	CCGC	9 cut(s)	30, 33, 69, 72, 175, 187, 237, 463, 772
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	3 cut(s)	53, 596, 734
StyD4I	CCNGG	5 cut(s)	40, 243, 296, 366, 599
StyI	CCWWGG	2 cut(s)	52, 740
TaaI	ACNGT	3 cut(s)	26, 624, 787
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	4 cut(s)	9, 92, 153, 648
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	2 cut(s)	644, 764
TatI	WGTACW	1 cut(s)	800
TauI	GCSGC	3 cut(s)	35, 74, 239
TfiI	GAWTC	3 cut(s)	11, 274, 389
Tru1I	TTAA	3 cut(s)	219, 312, 626
Tru9I	TTAA	3 cut(s)	219, 312, 626
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	618
TseI	GCWGC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	618
TspDTI	ATGAA	1 cut(s)	773
TspGWI	ACGGA	2 cut(s)	202, 356
TspRI	CASTG	1 cut(s)	492
VpaK11BI	GGWCC	2 cut(s)	44, 56
XapI	RAATTY	2 cut(s)	644, 764
XceI	RCATGY	2 cut(s)	256, 460
XmaJI	CCTAGG	1 cut(s)	52
XmnI	GAANNNNTTC	2 cut(s)	567, 764
XspI	CTAG	3 cut(s)	53, 596, 734
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.