Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003326

Physical Location & Seq

Genomic Coordinates Forward (+)

55914831 .. 55916241

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58951

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAAAGGGTACGGCAAGAACTTGAAGAATATAGGGATGTTGATGTCGAGAATGTCCTCCCTATCCTTCCTGTGGAACTTCAAAGTTATATCAAAAGTTGTTTGCCAATTACTCGGTTAAAGAAAGTGCCAATGCTTAGAAGTGTCGATGAAGAAGTGTTGAGAGCAATATGTGAACATATGAAACCCATCAAGTATACAAATATTCGTGGGAGGGTATATCATTCTCGCGATGGGGAACCACTTGAAAAGATGATATTCATTGTTGAGGGGGATCTAGGTGTTGAAAGAAGAAACTCTGCTACTCGGGATCTTCTATATGAAGGAGACTTCTATGGAGAGGAACTTGTACATTGGGTATCAGTATCACATACATCTTTTCCTGCCAGATTACCCTTATCAGTCGATTCTGCTTATGTCACCAACAATGATAGCATCCTTATTCTCATGGCTGACGACTTGAAGAGTGTAGTATCCAAGTTCAGGTTGCACTTCAGCAAGGAGATAACCCTTCGACCTGACGAGCCAGAGCTTCTGAGATCTGTTCAGTTGACTATGCTAAAGAAAGTGCCTCGGTTTCAAACTATGGACGAAGAAATGTTGAAAGCAATCTGTGCGCATCTGAAGCCTATAACCTATACTGATGGGACGTATATCATCAAAAAGGATGAACCACTCCGACTGATGTTCTTTGTCCTAGCCGGATATGTAGTCACCGAAAGTTATCCTCACGCTGTTGTTCGTGTAGGAGAATTCTGTGGACAAGAACTTCTTGAATGGGCATCAACTATCTCCTTTCCTGCCAAATTACCCACAGCACTCGAGTCTGCTAGGGCCAATGGTGATGTTAGAGTCCTTGCCCTCACGTTTGACGATTGGTTTAGTGTAGGCCATAAATTTTCATCTAGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans Pkinase_Tyr cNMP_binding

Protein Analysis

304

Amino Acids

34.87

Weight (kDa)

5.7

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55070 AT3G55070
fragaria_vesca	FvH4_7g20680 FvH4_7g20680 FvH4_7g20680
malus_domestica	MD01G1115200.v1.1 MD01G1115600.v1.1 MD07G1183500.v1.1
prunus_persica	Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1 Prupe.2G222200_v2.0.a1
pyrus_communis	pycom01g14420 pycom07g17610
rosa_chinensis	RchiOBHm_Chr1g0364711 RchiOBHm_Chr1g0364821 RchiOBHm_Chr1g0364831
rosa_laevigata	RLG00000027464
rosa_multiflora	Rmu_co8292327.1_g000001 Rmu_sc0028465.1_g000001 Rmu_sc0028466.1_g000001 Rmu_ssc0000112.1_g000032
rosa_roxburghii	Rroxscaffold_4G00291710 Rroxscaffold_4G00291720 Rroxscaffold_4G00292120 Rroxscaffold_4G00292130 Rroxscaffold_4G00292150
rosa_rugosa	Rorug01G0318300 Rorug01G0318500
rosa_samantha	Rh1AG327100 Rh1BG288200 Rh1BG288300 Rh1CG304900 Rh1CG305000 Rh1DG319900
rosa_wichuraiana	Rw1G028970 Rw1G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	618
AccI	GTMKAC	1 cut(s)	197
AccII	CGCG	1 cut(s)	231
AclWI	GGATC	2 cut(s)	282, 318
AcsI	RAATTY	2 cut(s)	752, 896
AcuI	CTGAAG	2 cut(s)	478, 644
AfaI	GTAC	2 cut(s)	12, 351
AfiI	CCNNNNNNNGG	2 cut(s)	73, 483
AgsI	TTSAA	8 cut(s)	26, 83, 248, 287, 463, 581, 604, 776
AluBI	AGCT	1 cut(s)	532
AluI	AGCT	1 cut(s)	532
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	282, 318
Ama87I	CYCGRG	2 cut(s)	306, 821
AoxI	GGCC	2 cut(s)	834, 889
ApoI	RAATTY	2 cut(s)	752, 896
AspLEI	GCGC	1 cut(s)	619
AspS9I	GGNCC	1 cut(s)	834
AsuHPI	GGTGA	3 cut(s)	412, 706, 854
AvaI	CYCGRG	2 cut(s)	306, 821
BccI	CCATC	3 cut(s)	197, 227, 638
BceAI	ACGGC	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	484
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	4 cut(s)	278, 698, 831, 906
BfuI	GTATCC	1 cut(s)	484
BglII	AGATCT	1 cut(s)	539
BmeT110I	CYCGRG	2 cut(s)	306, 821
BmgT120I	GGNCC	1 cut(s)	834
BmiI	GGNNCC	1 cut(s)	240
BmsI	GCATC	3 cut(s)	444, 628, 791
BsaJI	CCNNGG	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 483
BseDI	CCNNGG	1 cut(s)	572
BseGI	GGATG	3 cut(s)	43, 435, 673
BseLI	CCNNNNNNNGG	2 cut(s)	73, 483
BseMII	CTCAG	1 cut(s)	527
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	836, 891
BsiHKCI	CYCGRG	2 cut(s)	306, 821
BsiSI	CCGG	1 cut(s)	702
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	2 cut(s)	73, 483
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	661
BsnI	GGCC	2 cut(s)	836, 891
BsoBI	CYCGRG	2 cut(s)	306, 821
Bsp1407I	TGTACA	1 cut(s)	349
Bsp143I	GATC	3 cut(s)	274, 310, 539
Bsp68I	TCGCGA	1 cut(s)	231
BspANI	GGCC	2 cut(s)	836, 891
BspCNI	CTCAG	1 cut(s)	528
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	2 cut(s)	282, 318
BsrGI	TGTACA	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	572
BssMI	GATC	3 cut(s)	274, 310, 539
BssNAI	GTATAC	1 cut(s)	198
Bst1107I	GTATAC	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstAUI	TGTACA	1 cut(s)	349
BstDEI	CTNAG	2 cut(s)	137, 536
BstF5I	GGATG	3 cut(s)	43, 435, 673
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	619
BstKTI	GATC	3 cut(s)	277, 313, 542
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	3 cut(s)	274, 310, 539
BstMWI	GCNNNNNNNGC	2 cut(s)	614, 625
BstUI	CGCG	1 cut(s)	231
BstX2I	RGATCY	3 cut(s)	274, 310, 539
BstYI	RGATCY	3 cut(s)	274, 310, 539
BstZ17I	GTATAC	1 cut(s)	198
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	2 cut(s)	836, 891
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	3 cut(s)	43, 435, 673
BtuMI	TCGCGA	1 cut(s)	231
CfoI	GCGC	1 cut(s)	619
Cfr13I	GGNCC	1 cut(s)	834
Csp6I	GTAC	2 cut(s)	11, 350
CviAII	CATG	1 cut(s)	448
CviJI	RGCY	7 cut(s)	452, 526, 532, 628, 701, 836, 891
CviKI_1	RGCY	7 cut(s)	452, 526, 532, 628, 701, 836, 891
CviQI	GTAC	2 cut(s)	11, 350
DdeI	CTNAG	2 cut(s)	137, 536
DpnI	GATC	3 cut(s)	276, 312, 541
DpnII	GATC	3 cut(s)	274, 310, 539
Eam1104I	CTCTTC	1 cut(s)	458
EarI	CTCTTC	1 cut(s)	458
Eco57I	CTGAAG	2 cut(s)	478, 644
Eco88I	CYCGRG	2 cut(s)	306, 821
EcoRI	GAATTC	1 cut(s)	752
FaeI	CATG	1 cut(s)	451
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	1 cut(s)	447
FauNDI	CATATG	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	197
FokI	GGATG	3 cut(s)	50, 422, 680
FspAI	RTGCGCAY	1 cut(s)	618
FspBI	CTAG	4 cut(s)	278, 698, 831, 906
FspI	TGCGCA	1 cut(s)	618
GlaI	GCGC	1 cut(s)	618
HaeIII	GGCC	2 cut(s)	836, 891
HapII	CCGG	1 cut(s)	702
HhaI	GCGC	1 cut(s)	619
Hin1II	CATG	1 cut(s)	451
Hin6I	GCGC	1 cut(s)	617
HinP1I	GCGC	1 cut(s)	617
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HinfI	GANTC	3 cut(s)	407, 824, 852
HpaII	CCGG	1 cut(s)	702
HphI	GGTGA	3 cut(s)	412, 706, 854
Hpy166II	GTNNAC	4 cut(s)	176, 198, 552, 761
Hpy188I	TCNGA	3 cut(s)	537, 624, 680
Hpy188III	TCNNGA	4 cut(s)	49, 230, 308, 773
Hpy8I	GTNNAC	4 cut(s)	176, 198, 552, 761
HpyAV	CCTTC	3 cut(s)	77, 317, 521
HpyCH4IV	ACGT	2 cut(s)	650, 866
HpyCH4V	TGCA	1 cut(s)	490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	614, 625
HpyF3I	CTNAG	2 cut(s)	137, 536
HpySE526I	ACGT	2 cut(s)	650, 866
Hsp92II	CATG	1 cut(s)	451
HspAI	GCGC	1 cut(s)	617
Kzo9I	GATC	3 cut(s)	274, 310, 539
LpnPI	CCDG	8 cut(s)	84, 396, 400, 469, 531, 540, 715, 813
LweI	GCATC	3 cut(s)	444, 628, 791
MaeI	CTAG	4 cut(s)	278, 698, 831, 906
MaeII	ACGT	2 cut(s)	650, 866
MaeIII	GTNAC	2 cut(s)	418, 712
MalI	GATC	3 cut(s)	276, 312, 541
MboI	GATC	3 cut(s)	274, 310, 539
MboII	GAAGA	6 cut(s)	38, 164, 303, 305, 475, 605
MflI	RGATCY	3 cut(s)	274, 310, 539
MluCI	AATT	4 cut(s)	108, 752, 806, 896
MlyI	GAGTC	2 cut(s)	833, 861
MmeI	TCCRAC	1 cut(s)	703
MnlI	CCTC	7 cut(s)	68, 207, 262, 334, 582, 738, 872
MseI	TTAA	2 cut(s)	119, 913
MspI	CCGG	1 cut(s)	702
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	614, 625
NdeI	CATATG	1 cut(s)	180
NdeII	GATC	3 cut(s)	274, 310, 539
NlaIII	CATG	1 cut(s)	451
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	2 cut(s)	418, 712
NruI	TCGCGA	1 cut(s)	231
NsbI	TGCGCA	1 cut(s)	618
PaeR7I	CTCGAG	1 cut(s)	821
PfeI	GAWTC	1 cut(s)	407
PleI	GAGTC	2 cut(s)	832, 860
PpsI	GAGTC	2 cut(s)	832, 860
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	834
PspXI	VCTCGAGB	1 cut(s)	821
PsuI	RGATCY	3 cut(s)	274, 310, 539
RruI	TCGCGA	1 cut(s)	231
RsaI	GTAC	2 cut(s)	12, 351
RsaNI	GTAC	2 cut(s)	11, 350
SaqAI	TTAA	2 cut(s)	119, 913
Sau3AI	GATC	3 cut(s)	274, 310, 539
Sau96I	GGNCC	1 cut(s)	834
SchI	GAGTC	2 cut(s)	833, 861
SetI	ASST	7 cut(s)	283, 488, 520, 534, 638, 653, 869
SfaNI	GCATC	3 cut(s)	444, 628, 791
Sfr274I	CTCGAG	1 cut(s)	821
SlaI	CTCGAG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	4 cut(s)	108, 752, 806, 896
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	4 cut(s)	278, 698, 831, 906
TaiI	ACGT	2 cut(s)	653, 869
TaqI	TCGA	5 cut(s)	48, 147, 405, 514, 822
TasI	AATT	4 cut(s)	108, 752, 806, 896
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	2 cut(s)	119, 913
Tru9I	TTAA	2 cut(s)	119, 913
TseFI	GTSAC	2 cut(s)	418, 712
Tsp45I	GTSAC	2 cut(s)	418, 712
TspDTI	ATGAA	6 cut(s)	165, 197, 250, 336, 684, 891
XapI	RAATTY	2 cut(s)	752, 896
XhoI	CTCGAG	1 cut(s)	821
XmiI	GTMKAC	1 cut(s)	197
XspI	CTAG	4 cut(s)	278, 698, 831, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.