Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002806

Physical Location & Seq

Genomic Coordinates Forward (+)

23135630 .. 23137173

Gene Structure 1544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGGAAACAAAGGAGAGAAAGATAGTAGTAGCAGTAGACGAAAGCGAAGAGAGCATGGAAGCTCTGTCATGGAGTCTTGACAATCTTTTTCCATATGGTTCCAATAATACACTCATCCTCCTCTACGTCAAGCCCCCTCTTCCCGTTTACTCTTCCCTCGATGCCGCAGGGTTTATAGTGACAGGAGACCCGGTTGCAGCTTTGAAGAAGTATGAATACGAGCTCGTGGAATCGGTCATGGCTCGGTCTCGAACCGTGTACCAAGATTATGAGTCTGATATTAATATAGAGAGACGAGTTGGAAGAGGAGATGCTAAGGAAGTTATATGCAACGCAGTTCAGAAACTTAGAGTTGATATGTTAGTAATGGGCACTCATGACTATGGCTTCTTCAAAAGGGCTTTGCTAGGGAGTGTGAGCGAGTATTGCGCCAAACGAGTCAAGTGTCCTGTGGTTATCGTCAAGAAGCAAGCTCAAGATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

162

Amino Acids

18.26

Weight (kDa)

5.32

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	7 - 156	3.1e-30	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62550
fragaria_vesca	FvH4_5g39370 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300
malus_domestica	MD03G1296200.v1.1 MD04G1194600.v1.1 MD11G1315600.v1.1 MD12G1206900.v1.1
prunus_persica	Prupe.6G314600_v2.0.a1 Prupe.6G314600_v2.0.a1 Prupe.8G271100_v2.0.a1
pyrus_communis	pycom04g17190 pycom12g19480
rosa_chinensis	RchiOBHm_Chr3g0456911 RchiOBHm_Chr7g0241661
rosa_laevigata	RLG00000000556 RLG00000025265 RLG00000025268
rosa_multiflora	Rmu_sc0000133.1_g000003 Rmu_sc0002268.1_g000009 Rmu_sc0019791.1_g000001 Rmu_sc0026340.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218840 Rroxscaffold_6G00422380
rosa_rugosa	Rorug03G0017000 Rorug03G0017000 Rorug07G0346000
rosa_samantha	Rh3AG077300 Rh3BG079100 Rh3CG079000 Rh3DG081000 Rh7AG500600 Rh7BG471700 Rh7CG517000 Rh7DG485500
rosa_wichuraiana	Rw3G006630 Rw7G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AciI	CCGC	1 cut(s)	168
AfaI	GTAC	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	208, 397
AluBI	AGCT	4 cut(s)	65, 203, 226, 476
AluI	AGCT	4 cut(s)	65, 203, 226, 476
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	3 cut(s)	183, 255, 289
ApeKI	GCWGC	1 cut(s)	200
AseI	ATTAAT	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	228
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
BauI	CACGAG	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	3 cut(s)	183, 255, 289
BfaI	CTAG	1 cut(s)	410
BisI	GCNGC	2 cut(s)	168, 201
BlsI	GCNGC	2 cut(s)	169, 202
Bme1390I	CCNGG	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	154, 304
Bpu10I	CCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	462
BpuMI	CCSGG	1 cut(s)	194
BsaI	GGTCTC	2 cut(s)	183, 255
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 180, 210
BseGI	GGATG	1 cut(s)	117
BseRI	GAGGAG	2 cut(s)	113, 324
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	194
BsmAI	GTCTC	3 cut(s)	183, 255, 289
BsmBI	CGTCTC	1 cut(s)	289
Bso31I	GGTCTC	2 cut(s)	183, 255
Bsp1286I	GDGCHC	2 cut(s)	228, 377
BspACI	CCGC	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	103
BspTNI	GGTCTC	2 cut(s)	183, 255
BssSI	CACGAG	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	4 cut(s)	45, 147, 160, 301
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	2 cut(s)	318, 350
BstF5I	GGATG	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	434
BstMAI	GTCTC	3 cut(s)	183, 255, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 429
BstSCI	CCNGG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	474
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	4 cut(s)	58, 72, 241, 380
CviJI	RGCY	8 cut(s)	65, 136, 203, 226, 245, 390, 404, 476
CviKI_1	RGCY	8 cut(s)	65, 136, 203, 226, 245, 390, 404, 476
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	2 cut(s)	318, 350
Eam1104I	CTCTTC	4 cut(s)	45, 147, 160, 301
EarI	CTCTTC	4 cut(s)	45, 147, 160, 301
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	2 cut(s)	183, 255
Eco53kI	GAGCTC	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	289
FaeI	CATG	4 cut(s)	61, 75, 244, 383
FatI	CATG	4 cut(s)	57, 71, 240, 379
FauNDI	CATATG	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	168, 201
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	168, 201
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	2 cut(s)	168, 201
HapII	CCGG	1 cut(s)	194
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	4 cut(s)	61, 75, 244, 383
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HinfI	GANTC	4 cut(s)	76, 233, 275, 441
HpaII	CCGG	1 cut(s)	194
Hpy166II	GTNNAC	3 cut(s)	40, 151, 262
Hpy188I	TCNGA	2 cut(s)	280, 345
Hpy188III	TCNNGA	5 cut(s)	80, 252, 380, 466, 479
Hpy8I	GTNNAC	3 cut(s)	40, 151, 262
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	200, 333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 429
HpyF3I	CTNAG	2 cut(s)	318, 350
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	4 cut(s)	61, 75, 244, 383
HspAI	GCGC	1 cut(s)	432
LpnPI	CCDG	4 cut(s)	156, 171, 207, 465
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	2 cut(s)	154, 304
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	181
MboII	GAAGA	6 cut(s)	62, 134, 147, 220, 318, 385
MhlI	GDGCHC	2 cut(s)	228, 377
MluCI	AATT	1 cut(s)	484
MlyI	GAGTC	3 cut(s)	85, 284, 450
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	5 cut(s)	131, 134, 150, 170, 302
MseI	TTAA	2 cut(s)	285, 487
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	2 cut(s)	54, 429
NciI	CCSGG	1 cut(s)	194
NdeI	CATATG	1 cut(s)	97
NlaIII	CATG	4 cut(s)	61, 75, 244, 383
NlaIV	GGNNCC	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	181
PagI	TCATGA	1 cut(s)	379
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	169, 202
PleI	GAGTC	3 cut(s)	84, 283, 449
PpsI	GAGTC	3 cut(s)	84, 283, 449
PshBI	ATTAAT	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	103
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	285, 487
SatI	GCNGC	2 cut(s)	168, 201
SchI	GAGTC	3 cut(s)	85, 284, 450
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	2 cut(s)	228, 377
SetI	ASST	5 cut(s)	67, 132, 205, 228, 478
SfaNI	GCATC	2 cut(s)	154, 304
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
Sse9I	AATT	1 cut(s)	484
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	1 cut(s)	410
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	162, 253
TaqII	GACCGA	2 cut(s)	226, 237
TasI	AATT	1 cut(s)	484
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	2 cut(s)	285, 487
Tru9I	TTAA	2 cut(s)	285, 487
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	231
VspI	ATTAAT	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.