Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002806

Physical Location & Seq

Genomic Coordinates Reverse (-)

19683167 .. 19685029

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17190.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTCCGACAAAAAAATCAGGCCCACCGTCATAGAAAACCACTCTTCCACAAAAGCCCAAACCCACAACCCGCCAACAGAAATTATCCCACCCATCTTTTTACTATATATACCCACTCCACCACCTTTGCTTGTTCCATCAACGGAGCTCTGCCTCTATCTCCAGAAACCACTTGAAAAAATCTCAAACTGTTTTCGAATTTCGACCGTCCGATCGTTAAAGATGACTGACGTGGCAGAAAGCGAGCGGAGGATCCTCGTGGCCGTCGACGAAGGCGGGGAGAGCATGCATGCGCTGTCGTGGTGCCTGAAGAACGTTGCAGGGCAAAATTCCAAAGATACCCTTGTTCTTCTCTACGCGAAGCCCCCGCGAGCTGTGTTCACGGCTCTAGACGGCACAGGTAGGAGAGAGGCTCCTTCAGGGTATTTGTTTTCGTCTGATATTTTGGCGGCAATGGAGAAGTACGGCGCTGATGTGGCGGACTGCGTTATGGACAAGGGCAAGAAGATGTGCAAGGACCTCCAGCCGGATCTTAAGGTGGAGACGAAAGTAGAGAGCGGAGATCCGAGGGATGTCATTTGCCAGATGGTGGAGCGGCTTCGTGCTGACGTGTTGGTTATGGGAAGCCATGGCTATGGCGTCATCAAGAGGGCTTTTCTTGGGAGTGTGAGCAATCACTGTGCACAGAATGTCAAGTGTCCTGTCTTGATCGTGAAGAAGCCAAAAACAAATGCTGGGAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

249

Amino Acids

27.24

Weight (kDa)

8.94

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62550
fragaria_vesca	FvH4_5g39370 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300
malus_domestica	MD03G1296200.v1.1 MD04G1194600.v1.1 MD11G1315600.v1.1 MD12G1206900.v1.1
prunus_persica	Prupe.6G314600_v2.0.a1 Prupe.6G314600_v2.0.a1 Prupe.8G271100_v2.0.a1
pyrus_communis	pycom04g17190 pycom12g19480
rosa_chinensis	RchiOBHm_Chr3g0456911 RchiOBHm_Chr7g0241661
rosa_laevigata	RLG00000000556 RLG00000025265 RLG00000025268
rosa_multiflora	Rmu_sc0000133.1_g000003 Rmu_sc0002268.1_g000009 Rmu_sc0019791.1_g000001 Rmu_sc0026340.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218840 Rroxscaffold_6G00422380
rosa_rugosa	Rorug03G0017000 Rorug03G0017000 Rorug07G0346000
rosa_samantha	Rh3AG077300 Rh3BG079100 Rh3CG079000 Rh3DG081000 Rh7AG500600 Rh7BG471700 Rh7CG517000 Rh7DG485500
rosa_wichuraiana	Rw3G006630 Rw7G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	303
AccB7I	CCANNNNNTGG	1 cut(s)	589
AccBSI	CCGCTC	3 cut(s)	247, 558, 595
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	2 cut(s)	359, 370
AciI	CCGC	8 cut(s)	71, 247, 276, 368, 449, 479, 558, 595
AclI	AACGTT	1 cut(s)	315
AclWI	GGATC	4 cut(s)	247, 260, 537, 557
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	198, 328
AcuI	CTGAAG	2 cut(s)	329, 402
AcyI	GRCGYC	1 cut(s)	639
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	2 cut(s)	526, 589
AflII	CTTAAG	1 cut(s)	533
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	1 cut(s)	176
AjiI	CACGTC	2 cut(s)	232, 610
AluBI	AGCT	2 cut(s)	148, 374
AluI	AGCT	2 cut(s)	148, 374
Alw21I	GWGCWC	2 cut(s)	150, 685
Alw26I	GTCTC	1 cut(s)	536
Alw44I	GTGCAC	1 cut(s)	681
AlwI	GGATC	4 cut(s)	247, 260, 537, 557
AoxI	GGCC	2 cut(s)	20, 261
ApaLI	GTGCAC	1 cut(s)	681
ApoI	RAATTY	2 cut(s)	198, 328
AspLEI	GCGC	2 cut(s)	295, 470
AspS9I	GGNCC	2 cut(s)	21, 517
AsuII	TTCGAA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	685
BaeI	ACNNNNGTAYC	2 cut(s)	330, 363
BamHI	GGATCC	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	150
BauI	CACGAG	1 cut(s)	257
Bbv12I	GWGCWC	2 cut(s)	150, 685
BccI	CCATC	3 cut(s)	101, 145, 580
BceAI	ACGGC	4 cut(s)	248, 399, 409, 481
BcoDI	GTCTC	1 cut(s)	536
BfaI	CTAG	1 cut(s)	389
BfoI	RGCGCY	1 cut(s)	471
BfrI	CTTAAG	1 cut(s)	533
BisI	GCNGC	2 cut(s)	450, 596
BlsI	GCNGC	2 cut(s)	451, 597
Bme18I	GGWCC	1 cut(s)	517
BmgBI	CACGTC	2 cut(s)	232, 610
BmgT120I	GGNCC	2 cut(s)	21, 517
BmiI	GGNNCC	3 cut(s)	254, 305, 414
BplI	GAGNNNNNCTC	2 cut(s)	397, 429
BpmI	CTGGAG	2 cut(s)	146, 506
Bpu14I	TTCGAA	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	639
BsaJI	CCNNGG	2 cut(s)	566, 628
Bsc4I	CCNNNNNNNGG	2 cut(s)	526, 589
Bse3DI	GCAATG	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	566, 628
BseGI	GGATG	1 cut(s)	577
BseLI	CCNNNNNNNGG	2 cut(s)	526, 589
BseMI	GCAATG	1 cut(s)	459
BseSI	GKGCMC	1 cut(s)	685
BseYI	CCCAGC	1 cut(s)	734
Bsh1236I	CGCG	2 cut(s)	359, 370
Bsh1285I	CGRYCG	2 cut(s)	207, 215
BshFI	GGCC	2 cut(s)	22, 263
BshNI	GGYRCC	1 cut(s)	303
BsiEI	CGRYCG	2 cut(s)	207, 215
BsiHKAI	GWGCWC	2 cut(s)	150, 685
BsiSI	CCGG	1 cut(s)	527
BslI	CCNNNNNNNGG	2 cut(s)	526, 589
BsmAI	GTCTC	1 cut(s)	536
BsmBI	CGTCTC	1 cut(s)	536
BsnI	GGCC	2 cut(s)	22, 263
Bsp119I	TTCGAA	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	150, 685
Bsp143I	GATC	5 cut(s)	212, 252, 529, 562, 708
Bsp19I	CCATGG	1 cut(s)	628
BspACI	CCGC	8 cut(s)	71, 247, 276, 368, 449, 479, 558, 595
BspANI	GGCC	2 cut(s)	22, 263
BspFNI	CGCG	2 cut(s)	359, 370
BspLI	GGNNCC	3 cut(s)	254, 305, 414
BspPI	GGATC	4 cut(s)	247, 260, 537, 557
BspT104I	TTCGAA	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	303
BspTI	CTTAAG	1 cut(s)	533
BsrBI	CCGCTC	3 cut(s)	247, 558, 595
BsrDI	GCAATG	1 cut(s)	459
BssECI	CCNNGG	2 cut(s)	566, 628
BssMI	GATC	5 cut(s)	212, 252, 529, 562, 708
BssNI	GRCGYC	1 cut(s)	639
BssSI	CACGAG	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	628
Bst2BI	CACGAG	1 cut(s)	257
Bst4CI	ACNGT	4 cut(s)	28, 191, 208, 680
Bst6I	CTCTTC	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	639
BstAFI	CTTAAG	1 cut(s)	533
BstBI	TTCGAA	1 cut(s)	196
BstC8I	GCNNGC	4 cut(s)	245, 287, 291, 372
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	1 cut(s)	577
BstFNI	CGCG	2 cut(s)	359, 370
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	2 cut(s)	295, 470
BstKTI	GATC	5 cut(s)	215, 255, 532, 565, 711
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	5 cut(s)	212, 252, 529, 562, 708
BstMCI	CGRYCG	2 cut(s)	207, 215
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 476
BstNSI	RCATGY	2 cut(s)	289, 293
BstSLI	GKGCMC	1 cut(s)	685
BstUI	CGCG	2 cut(s)	359, 370
BstX2I	RGATCY	3 cut(s)	252, 529, 562
BstXI	CCANNNNNNTGG	1 cut(s)	635
BstYI	RGATCY	3 cut(s)	252, 529, 562
BsuRI	GGCC	2 cut(s)	22, 263
BtgI	CCRYGG	1 cut(s)	628
BtrI	CACGTC	2 cut(s)	232, 610
BtsCI	GGATG	1 cut(s)	577
BtsIMutI	CAGTG	1 cut(s)	676
Cac8I	GCNNGC	4 cut(s)	245, 287, 291, 372
CfoI	GCGC	2 cut(s)	295, 470
Cfr13I	GGNCC	2 cut(s)	21, 517
CseI	GACGC	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	463
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	3 cut(s)	286, 290, 629
CviQI	GTAC	1 cut(s)	463
DpnI	GATC	5 cut(s)	214, 254, 531, 564, 710
DpnII	GATC	5 cut(s)	212, 252, 529, 562, 708
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
EciI	GGCGGA	1 cut(s)	494
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	628
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	517
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	2 cut(s)	329, 402
EcoICRI	GAGCTC	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	628
EcoT22I	ATGCAT	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	628
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	3 cut(s)	289, 293, 632
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FatI	CATG	3 cut(s)	285, 289, 628
FauI	CCCGC	3 cut(s)	78, 269, 375
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	450, 596
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	450, 596
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	2 cut(s)	294, 469
GluI	GCNGC	2 cut(s)	450, 596
GsaI	CCCAGC	1 cut(s)	738
GsuI	CTGGAG	2 cut(s)	146, 506
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	22, 263
HapII	CCGG	1 cut(s)	527
HgaI	GACGC	1 cut(s)	628
HhaI	GCGC	2 cut(s)	295, 470
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	3 cut(s)	289, 293, 632
Hin6I	GCGC	2 cut(s)	293, 468
HinP1I	GCGC	2 cut(s)	293, 468
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HpaII	CCGG	1 cut(s)	527
Hpy166II	GTNNAC	3 cut(s)	268, 381, 683
Hpy188I	TCNGA	4 cut(s)	7, 212, 439, 567
Hpy188III	TCNNGA	5 cut(s)	163, 389, 646, 706, 712
Hpy8I	GTNNAC	3 cut(s)	268, 381, 683
Hpy99I	CGWCG	2 cut(s)	269, 272
HpyAV	CCTTC	2 cut(s)	266, 426
HpyCH4III	ACNGT	4 cut(s)	28, 191, 208, 680
HpyCH4IV	ACGT	3 cut(s)	231, 315, 609
HpyCH4V	TGCA	4 cut(s)	289, 320, 513, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 476
HpySE526I	ACGT	3 cut(s)	231, 315, 609
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	3 cut(s)	289, 293, 632
HspAI	GCGC	2 cut(s)	293, 468
Kzo9I	GATC	5 cut(s)	212, 252, 529, 562, 708
LmnI	GCTCC	4 cut(s)	145, 418, 592, 738
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	3 cut(s)	231, 315, 609
MalI	GATC	5 cut(s)	214, 254, 531, 564, 710
MbiI	CCGCTC	3 cut(s)	247, 558, 595
MboI	GATC	5 cut(s)	212, 252, 529, 562, 708
MboII	GAAGA	5 cut(s)	36, 322, 341, 517, 727
MflI	RGATCY	3 cut(s)	252, 529, 562
MhlI	GDGCHC	2 cut(s)	150, 685
MluCI	AATT	3 cut(s)	81, 198, 328
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	7 cut(s)	164, 243, 266, 403, 530, 561, 642
Mph1103I	ATGCAT	1 cut(s)	291
MseI	TTAA	2 cut(s)	218, 534
MslI	CAYNNNNRTG	1 cut(s)	633
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	1 cut(s)	527
MvnI	CGCG	2 cut(s)	359, 370
MwoI	GCNNNNNNNGC	2 cut(s)	282, 476
NcoI	CCATGG	1 cut(s)	628
NdeII	GATC	5 cut(s)	212, 252, 529, 562, 708
NlaIII	CATG	3 cut(s)	289, 293, 632
NlaIV	GGNNCC	3 cut(s)	254, 305, 414
NsiI	ATGCAT	1 cut(s)	291
NspI	RCATGY	2 cut(s)	289, 293
NspV	TTCGAA	1 cut(s)	196
PaeI	GCATGC	2 cut(s)	289, 293
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	2 cut(s)	451, 597
Ple19I	CGATCG	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	517
Psp124BI	GAGCTC	1 cut(s)	150
Psp1406I	AACGTT	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	517
PspFI	CCCAGC	1 cut(s)	734
PspN4I	GGNNCC	3 cut(s)	254, 305, 414
PspPI	GGNCC	2 cut(s)	21, 517
PspPPI	RGGWCCY	1 cut(s)	517
PsuI	RGATCY	3 cut(s)	252, 529, 562
PvuI	CGATCG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	633
SacI	GAGCTC	1 cut(s)	150
SalI	GTCGAC	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	218, 534
SatI	GCNGC	2 cut(s)	450, 596
Sau3AI	GATC	5 cut(s)	212, 252, 529, 562, 708
Sau96I	GGNCC	2 cut(s)	21, 517
SduI	GDGCHC	2 cut(s)	150, 685
SetI	ASST	9 cut(s)	127, 150, 234, 318, 376, 403, 522, 540, 612
SfuI	TTCGAA	1 cut(s)	196
SgrDI	CGTCGACG	1 cut(s)	266
SinI	GGWCC	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
SphI	GCATGC	2 cut(s)	289, 293
Sse9I	AATT	3 cut(s)	81, 198, 328
SsiI	CCGC	8 cut(s)	71, 247, 276, 368, 449, 479, 558, 595
SspMI	CTAG	1 cut(s)	389
SstI	GAGCTC	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	628
TaaI	ACNGT	4 cut(s)	28, 191, 208, 680
TaiI	ACGT	3 cut(s)	234, 318, 612
TaqI	TCGA	3 cut(s)	196, 203, 267
TasI	AATT	3 cut(s)	81, 198, 328
TauI	GCSGC	2 cut(s)	452, 598
Tru1I	TTAA	2 cut(s)	218, 534
Tru9I	TTAA	2 cut(s)	218, 534
TscAI	CASTG	1 cut(s)	683
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	683
Van91I	CCANNNNNTGG	1 cut(s)	589
Vha464I	CTTAAG	1 cut(s)	533
VneI	GTGCAC	1 cut(s)	681
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	2 cut(s)	198, 328
XbaI	TCTAGA	1 cut(s)	388
XceI	RCATGY	2 cut(s)	289, 293
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	389
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.