Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002806

Physical Location & Seq

Genomic Coordinates Reverse (-)

29074947 .. 29075940

Gene Structure 994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAAGGGGATATTAGTATGAAGAAAATAGTAGTGGCGGTGGATGAGAGCGAAGAGAGCATGCACGCACTTTCCTGGTGTCTCGGAAACCTTTCCTCTCAAAAAGCCACTGATGCTACTGCTGCCGATACCAGTCGTACTAGCCTTGTTCTTCTCTATGTCAAACCACCACCTCCACTTCATTCCTCTTATGACGCTGCAGGATACATGTTTTCGAAGAACGATGTTGTGGCGACAATGGAGAAATACGGGAATGACATGATAAATTCAGTGATGCAACGAGCTGAAGCCGTCTACAGAAACTTCAATGTCAGTGCCAATGTAAATATCGAAAGAGTGGTTGGCAGCGGAGACCCGAAAGATGTCATATGCAATACTGTCGAGAAGCTTCGAGCTGATACTTTGGTCATGGGATCCCATGGTTATGGTTTCTTCAAGAGGGCTCTTCTTGGAAGCGTGAGTGATTATTGTGCGAAACATGTAGAGTGTCCGGTGGTGATTGTCAAGCATCCTGACCACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

175

Amino Acids

19.03

Weight (kDa)

6.05

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	7 - 169	3.8e-29	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62550
fragaria_vesca	FvH4_5g39370 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300
malus_domestica	MD03G1296200.v1.1 MD04G1194600.v1.1 MD11G1315600.v1.1 MD12G1206900.v1.1
prunus_persica	Prupe.6G314600_v2.0.a1 Prupe.6G314600_v2.0.a1 Prupe.8G271100_v2.0.a1
pyrus_communis	pycom04g17190 pycom12g19480
rosa_chinensis	RchiOBHm_Chr3g0456911 RchiOBHm_Chr7g0241661
rosa_laevigata	RLG00000000556 RLG00000025265 RLG00000025268
rosa_multiflora	Rmu_sc0000133.1_g000003 Rmu_sc0002268.1_g000009 Rmu_sc0019791.1_g000001 Rmu_sc0026340.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218840 Rroxscaffold_6G00422380
rosa_rugosa	Rorug03G0017000 Rorug03G0017000 Rorug07G0346000
rosa_samantha	Rh3AG077300 Rh3BG079100 Rh3CG079000 Rh3DG081000 Rh7AG500600 Rh7BG471700 Rh7CG517000 Rh7DG485500
rosa_wichuraiana	Rw3G006630 Rw7G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	2 cut(s)	38, 348
AclWI	GGATC	2 cut(s)	408, 421
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	139
AflIII	ACRYGT	2 cut(s)	207, 478
AgsI	TTSAA	2 cut(s)	307, 436
AjnI	CCWGG	1 cut(s)	74
AjuI	GAANNNNNNNTTGG	2 cut(s)	324, 356
AluBI	AGCT	3 cut(s)	284, 388, 395
AluI	AGCT	3 cut(s)	284, 388, 395
Alw26I	GTCTC	2 cut(s)	86, 345
AlwI	GGATC	2 cut(s)	408, 421
ApeKI	GCWGC	3 cut(s)	122, 197, 345
ApoI	RAATTY	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	508
AsuII	TTCGAA	1 cut(s)	215
BaeI	ACNNNNGTAYC	2 cut(s)	390, 423
BamHI	GGATCC	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	445
BbvI	GCAGC	3 cut(s)	109, 184, 357
BceAI	ACGGC	1 cut(s)	275
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BciT130I	CCWGG	1 cut(s)	76
BciVI	GTATCC	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	86, 345
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	2 cut(s)	198, 295
BfuI	GTATCC	1 cut(s)	197
BisI	GCNGC	3 cut(s)	123, 198, 346
BlsI	GCNGC	3 cut(s)	124, 199, 347
Bme1390I	CCNGG	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	3 cut(s)	103, 264, 517
Bpu14I	TTCGAA	1 cut(s)	215
BsaI	GGTCTC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	418
BsaWI	WCCGGW	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	2 cut(s)	49, 508
BseNI	ACTGG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	109, 184, 357
BsiSI	CCGG	1 cut(s)	491
BsmAI	GTCTC	2 cut(s)	86, 345
Bso31I	GGTCTC	1 cut(s)	345
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	1 cut(s)	413
Bsp19I	CCATGG	1 cut(s)	418
BspACI	CCGC	2 cut(s)	38, 348
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	2 cut(s)	408, 421
BspQI	GCTCTTC	1 cut(s)	450
BspT104I	TTCGAA	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	2 cut(s)	48, 450
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	62, 66
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	2 cut(s)	49, 508
BstKTI	GATC	1 cut(s)	416
BstMAI	GTCTC	2 cut(s)	86, 345
BstMBI	GATC	1 cut(s)	413
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 113, 122
BstNI	CCWGG	1 cut(s)	76
BstNSI	RCATGY	3 cut(s)	64, 211, 482
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	2 cut(s)	198, 295
BstV1I	GCAGC	3 cut(s)	109, 184, 357
BstX2I	RGATCY	1 cut(s)	413
BstXI	CCANNNNNNTGG	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	413
BsuI	GTATCC	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	49, 508
BtsIMutI	CAGTG	3 cut(s)	108, 276, 319
Cac8I	GCNNGC	2 cut(s)	62, 66
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	138
CviAII	CATG	6 cut(s)	61, 208, 259, 409, 419, 479
CviJI	RGCY	7 cut(s)	107, 144, 284, 290, 388, 395, 443
CviKI_1	RGCY	7 cut(s)	107, 144, 284, 290, 388, 395, 443
CviQI	GTAC	1 cut(s)	138
DpnI	GATC	1 cut(s)	415
DpnII	GATC	1 cut(s)	413
Eam1104I	CTCTTC	2 cut(s)	48, 450
EarI	CTCTTC	2 cut(s)	48, 450
Eco130I	CCWWGG	1 cut(s)	418
Eco24I	GRGCYC	1 cut(s)	445
Eco31I	GGTCTC	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	6 cut(s)	64, 211, 262, 412, 422, 482
FatI	CATG	6 cut(s)	60, 207, 258, 408, 418, 478
FauNDI	CATATG	1 cut(s)	368
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	123, 198, 346
FokI	GGATG	2 cut(s)	56, 495
FriOI	GRGCYC	1 cut(s)	445
Fsp4HI	GCNGC	3 cut(s)	123, 198, 346
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	3 cut(s)	123, 198, 346
HapII	CCGG	1 cut(s)	491
HgaI	GACGC	1 cut(s)	203
Hin1II	CATG	6 cut(s)	64, 211, 262, 412, 422, 482
HindIII	AAGCTT	1 cut(s)	386
HpaII	CCGG	1 cut(s)	491
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	3 cut(s)	382, 436, 512
Hpy8I	GTNNAC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4V	TGCA	4 cut(s)	64, 200, 277, 372
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 113, 122
Hsp92II	CATG	6 cut(s)	64, 211, 262, 412, 422, 482
Kzo9I	GATC	1 cut(s)	413
LguI	GCTCTTC	1 cut(s)	450
LpnPI	CCDG	5 cut(s)	61, 88, 145, 186, 504
Lsp1109I	GCAGC	3 cut(s)	109, 184, 357
LweI	GCATC	3 cut(s)	103, 264, 517
MaeI	CTAG	1 cut(s)	141
MalI	GATC	1 cut(s)	415
MboI	GATC	1 cut(s)	413
MboII	GAAGA	6 cut(s)	34, 65, 143, 229, 424, 437
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	1 cut(s)	265
MnlI	CCTC	4 cut(s)	106, 183, 196, 432
MroXI	GAANNNNTTC	1 cut(s)	91
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	348
MspI	CCGG	1 cut(s)	491
MspR9I	CCNGG	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	57, 113, 122
NcoI	CCATGG	1 cut(s)	418
NdeI	CATATG	1 cut(s)	368
NdeII	GATC	1 cut(s)	413
NlaIII	CATG	6 cut(s)	64, 211, 262, 412, 422, 482
NlaIV	GGNNCC	1 cut(s)	415
NspI	RCATGY	3 cut(s)	64, 211, 482
NspV	TTCGAA	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	64
PciI	ACATGT	2 cut(s)	207, 478
PciSI	GCTCTTC	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	91
PkrI	GCNGC	3 cut(s)	124, 199, 347
PscI	ACATGT	2 cut(s)	207, 478
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	413
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
RseI	CAYNNNNRTG	1 cut(s)	423
SapI	GCTCTTC	1 cut(s)	450
SatI	GCNGC	3 cut(s)	123, 198, 346
Sau3AI	GATC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	5 cut(s)	93, 175, 286, 390, 397
SfaNI	GCATC	3 cut(s)	103, 264, 517
SfcI	CTRYAG	2 cut(s)	198, 295
SfuI	TTCGAA	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	423
SphI	GCATGC	1 cut(s)	64
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	2 cut(s)	38, 348
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	379
TaqI	TCGA	4 cut(s)	215, 330, 381, 391
TasI	AATT	1 cut(s)	265
TscAI	CASTG	3 cut(s)	115, 276, 319
TseI	GCWGC	3 cut(s)	122, 197, 345
TspDTI	ATGAA	2 cut(s)	35, 170
TspRI	CASTG	3 cut(s)	115, 276, 319
XapI	RAATTY	1 cut(s)	265
XceI	RCATGY	3 cut(s)	64, 211, 482
XmiI	GTMKAC	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	91
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.