Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002806

Physical Location & Seq

Genomic Coordinates Forward (+)

6251881 .. 6253016

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG081000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCTGACGTGGCGGAGAAAGAGCGGAAGATCCTGGTGGCCGTCGACGAGGGCGAGGAGAGCATGTATGCTCTCTCCTGGTGCCTCAAGAACGTGGTTTCTCAAAATTCCAAAGATACCCTTATCCTGGTCTACGTTAAGCCCCCGAAAGCTGTGTACATGCCCCTAGATGGCACAGGGTATATGTTTTCGACTGATATTTTTGCGGCGATGGACAAGTACAGCGGCCAGGTGGCCAGCTCCGTCGTCGAGAAGGCCAAGAAGCTGTGCCGGGATGTTCTTCCTGAGCAGGATGTTAAGGTGGAGACGCGAGTAGAGAATGGTGATCCGAGGGATGTGATTTGCCATCTGGTGGAGCAGATCGCTGCTGATGTTCTTGTCATGGGTAGTCATGGCTATGGTCTCATCAAGAGGGCTTTCCTTGGAAGTGTGAGCAACCACTGTGCACAGAATGTGAAGTGTCCTGTGTTGATTGTGAAGAAGCCGAAAACAAATTGTGGGAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

169

Amino Acids

18.55

Weight (kDa)

7.57

Isoelectric Point (pI)

27.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	9 - 160	1e-30	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62550
fragaria_vesca	FvH4_5g39370 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300
malus_domestica	MD03G1296200.v1.1 MD04G1194600.v1.1 MD11G1315600.v1.1 MD12G1206900.v1.1
prunus_persica	Prupe.6G314600_v2.0.a1 Prupe.6G314600_v2.0.a1 Prupe.8G271100_v2.0.a1
pyrus_communis	pycom04g17190 pycom12g19480
rosa_chinensis	RchiOBHm_Chr3g0456911 RchiOBHm_Chr7g0241661
rosa_laevigata	RLG00000000556 RLG00000025265 RLG00000025268
rosa_multiflora	Rmu_sc0000133.1_g000003 Rmu_sc0002268.1_g000009 Rmu_sc0019791.1_g000001 Rmu_sc0026340.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218840 Rroxscaffold_6G00422380
rosa_rugosa	Rorug03G0017000 Rorug03G0017000 Rorug07G0346000
rosa_samantha	Rh3AG077300 Rh3BG079100 Rh3CG079000 Rh3DG081000 Rh7AG500600 Rh7BG471700 Rh7CG517000 Rh7DG485500
rosa_wichuraiana	Rw3G006630 Rw7G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	81
AccB7I	CCANNNNNTGG	1 cut(s)	352
AccBSI	CCGCTC	1 cut(s)	25
AccI	GTMKAC	2 cut(s)	45, 132
AccII	CGCG	1 cut(s)	310
AciI	CCGC	4 cut(s)	14, 25, 206, 225
AclWI	GGATC	2 cut(s)	25, 320
AcoI	YGGCCR	3 cut(s)	39, 226, 234
AcsI	RAATTY	1 cut(s)	106
AfaI	GTAC	2 cut(s)	158, 221
AfiI	CCNNNNNNNGG	3 cut(s)	127, 170, 352
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	4 cut(s)	33, 77, 126, 228
AluBI	AGCT	3 cut(s)	152, 240, 265
AluI	AGCT	3 cut(s)	152, 240, 265
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	2 cut(s)	299, 407
Alw44I	GTGCAC	1 cut(s)	444
AlwI	GGATC	2 cut(s)	25, 320
AoxI	GGCC	4 cut(s)	39, 226, 234, 255
ApaLI	GTGCAC	1 cut(s)	444
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	448
BalI	TGGCCA	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	3 cut(s)	164, 205, 354
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	4 cut(s)	35, 79, 128, 230
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	2 cut(s)	299, 407
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	3 cut(s)	207, 226, 366
BlsI	GCNGC	3 cut(s)	208, 227, 367
Bme1390I	CCNGG	5 cut(s)	35, 79, 128, 230, 272
BmgBI	CACGTC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	5 cut(s)	35, 79, 128, 230, 272
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	329, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 170, 352
BseBI	CCWGG	4 cut(s)	35, 79, 128, 230
BseDI	CCNNGG	2 cut(s)	329, 421
BseGI	GGATG	3 cut(s)	280, 298, 340
BseLI	CCNNNNNNNGG	3 cut(s)	127, 170, 352
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	448
BseXI	GCAGC	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	310
BshFI	GGCC	4 cut(s)	41, 228, 236, 257
BshNI	GGYRCC	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	271
BslI	CCNNNNNNNGG	3 cut(s)	127, 170, 352
BsmAI	GTCTC	2 cut(s)	299, 407
BsmBI	CGTCTC	1 cut(s)	299
BsnI	GGCC	4 cut(s)	41, 228, 236, 257
Bso31I	GGTCTC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	30, 325, 360
BspACI	CCGC	4 cut(s)	14, 25, 206, 225
BspANI	GGCC	4 cut(s)	41, 228, 236, 257
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	25, 320
BspT107I	GGYRCC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	407
BsrBI	CCGCTC	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	329, 421
BssMI	GATC	3 cut(s)	30, 325, 360
BssT1I	CCWWGG	1 cut(s)	421
Bst2UI	CCWGG	4 cut(s)	35, 79, 128, 230
Bst4CI	ACNGT	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	3 cut(s)	280, 298, 340
BstFNI	CGCG	1 cut(s)	310
BstKTI	GATC	3 cut(s)	33, 328, 363
BstMAI	GTCTC	2 cut(s)	299, 407
BstMBI	GATC	3 cut(s)	30, 325, 360
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 60
BstNI	CCWGG	4 cut(s)	35, 79, 128, 230
BstNSI	RCATGY	2 cut(s)	67, 163
BstSCI	CCNGG	5 cut(s)	33, 77, 126, 228, 270
BstSLI	GKGCMC	1 cut(s)	448
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	4 cut(s)	41, 228, 236, 257
BtgZI	GCGATG	1 cut(s)	224
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	280, 298, 340
BtsIMutI	CAGTG	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	238
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	157, 220
CviAII	CATG	4 cut(s)	64, 160, 382, 392
CviQI	GTAC	2 cut(s)	157, 220
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	32, 327, 362
DpnII	GATC	3 cut(s)	30, 325, 360
EaeI	YGGCCR	3 cut(s)	39, 226, 234
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	407
EcoRII	CCWGG	4 cut(s)	33, 77, 126, 228
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	4 cut(s)	67, 163, 385, 395
FaiI	YATR	8 cut(s)	65, 69, 161, 183, 185, 383, 393, 399
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	4 cut(s)	63, 159, 381, 391
FblI	GTMKAC	2 cut(s)	45, 132
Fnu4HI	GCNGC	3 cut(s)	207, 226, 366
FokI	GGATG	3 cut(s)	287, 305, 347
Fsp4HI	GCNGC	3 cut(s)	207, 226, 366
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	3 cut(s)	207, 226, 366
HaeIII	GGCC	4 cut(s)	41, 228, 236, 257
HapII	CCGG	1 cut(s)	271
HgaI	GACGC	1 cut(s)	316
Hin1II	CATG	4 cut(s)	67, 163, 385, 395
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	4 cut(s)	46, 133, 157, 446
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	4 cut(s)	88, 250, 284, 409
Hpy8I	GTNNAC	4 cut(s)	46, 133, 157, 446
Hpy99I	CGWCG	4 cut(s)	47, 50, 248, 251
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	3 cut(s)	9, 93, 135
HpyCH4V	TGCA	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 60
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	3 cut(s)	9, 93, 135
Hsp92II	CATG	4 cut(s)	67, 163, 385, 395
Kzo9I	GATC	3 cut(s)	30, 325, 360
LmnI	GCTCC	3 cut(s)	245, 355, 501
Lsp1109I	GCAGC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	3 cut(s)	9, 93, 135
MalI	GATC	3 cut(s)	32, 327, 362
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	3 cut(s)	30, 325, 360
MboII	GAAGA	3 cut(s)	40, 272, 490
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	448
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	2 cut(s)	106, 493
MluNI	TGGCCA	1 cut(s)	236
MnlI	CCTC	5 cut(s)	43, 49, 95, 324, 405
Mox20I	TGGCCA	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	2 cut(s)	138, 297
MslI	CAYNNNNRTG	1 cut(s)	396
Msp20I	TGGCCA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	5 cut(s)	35, 79, 128, 230, 272
MvaI	CCWGG	4 cut(s)	35, 79, 128, 230
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	2 cut(s)	11, 60
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	3 cut(s)	30, 325, 360
NlaIII	CATG	4 cut(s)	67, 163, 385, 395
NlaIV	GGNNCC	1 cut(s)	83
NspI	RCATGY	2 cut(s)	67, 163
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PflMI	CCANNNNNTGG	1 cut(s)	352
PkrI	GCNGC	3 cut(s)	208, 227, 367
Psp6I	CCWGG	4 cut(s)	33, 77, 126, 228
PspGI	CCWGG	4 cut(s)	33, 77, 126, 228
PspN4I	GGNNCC	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	2 cut(s)	158, 221
RsaNI	GTAC	2 cut(s)	157, 220
RseI	CAYNNNNRTG	1 cut(s)	396
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	138, 297
SatI	GCNGC	3 cut(s)	207, 226, 366
Sau3AI	GATC	3 cut(s)	30, 325, 360
ScrFI	CCNGG	5 cut(s)	35, 79, 128, 230, 272
SduI	GDGCHC	1 cut(s)	448
SetI	ASST	8 cut(s)	12, 96, 138, 154, 234, 242, 267, 303
SgrDI	CGTCGACG	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	106, 493
SsiI	CCGC	4 cut(s)	14, 25, 206, 225
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	5 cut(s)	33, 77, 126, 228, 270
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	3 cut(s)	12, 96, 138
TaqI	TCGA	3 cut(s)	45, 191, 249
TasI	AATT	2 cut(s)	106, 493
TatI	WGTACW	2 cut(s)	156, 219
TauI	GCSGC	2 cut(s)	209, 228
Tru1I	TTAA	2 cut(s)	138, 297
Tru9I	TTAA	2 cut(s)	138, 297
TscAI	CASTG	1 cut(s)	446
TseI	GCWGC	1 cut(s)	365
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	1 cut(s)	446
Van91I	CCANNNNNTGG	1 cut(s)	352
VneI	GTGCAC	1 cut(s)	444
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	2 cut(s)	67, 163
XmiI	GTMKAC	2 cut(s)	45, 132
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.