Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002806

Physical Location & Seq

Genomic Coordinates Forward (+)

42756666 .. 42758195

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1315600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAGGCCGAAAACATGAATAGCAGAGAGCACAAAATTGTGGTGGCAGTAGACGAGAGCGAAGAGAGCATGCATGCTCTCTCCTGGTGTCTGGGAAACCTCTCCTCTCAAAACGCAAACAACACTCTCGTTCTTCTCTATGTCAAACCGCAGCCAGTCCATTCCACTTTCGACGCTGCAGCATATATGTTTTCGAGCGATGTGGTTGGATCCATGGAAAAATACGGGACTAAGATGGTAAATTCAGTGATGCAAAGAGCTGAAGCCGTTTACAGAAATTTCCAGACCAATGCGCACATTGTGAGAGTAGTAGGGAAGGGAGATCCAAAGAATGTGATATGTAATACGGTTGAGAAACTCAAAGCTGACACTTTGGTCATGGGAAGCCATGGTTATGGTTTCTTTAAGAGGACTCTTCTTGGAAGTGTGAGTGATTATTGTGCGAAACACGTAGAGTGCCCCGTGGTGATTGTGAAGAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

162

Amino Acids

17.81

Weight (kDa)

7.7

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	11 - 159	1e-28	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62550
fragaria_vesca	FvH4_5g39370 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300
malus_domestica	MD03G1296200.v1.1 MD04G1194600.v1.1 MD11G1315600.v1.1 MD12G1206900.v1.1
prunus_persica	Prupe.6G314600_v2.0.a1 Prupe.6G314600_v2.0.a1 Prupe.8G271100_v2.0.a1
pyrus_communis	pycom04g17190 pycom12g19480
rosa_chinensis	RchiOBHm_Chr3g0456911 RchiOBHm_Chr7g0241661
rosa_laevigata	RLG00000000556 RLG00000025265 RLG00000025268
rosa_multiflora	Rmu_sc0000133.1_g000003 Rmu_sc0002268.1_g000009 Rmu_sc0019791.1_g000001 Rmu_sc0026340.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218840 Rroxscaffold_6G00422380
rosa_rugosa	Rorug03G0017000 Rorug03G0017000 Rorug07G0346000
rosa_samantha	Rh3AG077300 Rh3BG079100 Rh3CG079000 Rh3DG081000 Rh7AG500600 Rh7BG471700 Rh7CG517000 Rh7DG485500
rosa_wichuraiana	Rw3G006630 Rw7G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
Acc16I	TGCGCA	1 cut(s)	294
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	3 cut(s)	204, 217, 317
AcsI	RAATTY	2 cut(s)	241, 277
AcuI	CTGAAG	1 cut(s)	282
AdeI	CACNNNGTG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	448
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	2 cut(s)	260, 365
AluI	AGCT	2 cut(s)	260, 365
Alw21I	GWGCWC	1 cut(s)	33
AlwI	GGATC	3 cut(s)	204, 217, 317
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	3 cut(s)	151, 176, 179
ApoI	RAATTY	2 cut(s)	241, 277
AspLEI	GCGC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	461
BamHI	GGATCC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	163, 163, 191
BccI	CCATC	1 cut(s)	229
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	85
BfmI	CTRYAG	1 cut(s)	177
BisI	GCNGC	3 cut(s)	152, 177, 180
BlsI	GCNGC	3 cut(s)	153, 178, 181
Bme1390I	CCNGG	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	451
BsaJI	CCNNGG	3 cut(s)	213, 388, 462
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	85
BseDI	CCNNGG	3 cut(s)	213, 388, 462
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	94
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	3 cut(s)	163, 163, 191
BshFI	GGCC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	33, 461
Bsp143I	GATC	2 cut(s)	209, 322
Bsp19I	CCATGG	2 cut(s)	213, 388
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	211
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	3 cut(s)	204, 217, 317
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	3 cut(s)	213, 388, 462
BssMI	GATC	2 cut(s)	209, 322
BssT1I	CCWWGG	2 cut(s)	213, 388
Bst2UI	CCWGG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	57, 420
BstBAI	YACGTR	1 cut(s)	451
BstC8I	GCNNGC	2 cut(s)	71, 75
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	3 cut(s)	213, 388, 462
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	2 cut(s)	212, 325
BstMBI	GATC	2 cut(s)	209, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNI	CCWGG	1 cut(s)	85
BstNSI	RCATGY	2 cut(s)	73, 77
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	461
BstV1I	GCAGC	3 cut(s)	163, 163, 191
BstX2I	RGATCY	2 cut(s)	209, 322
BstXI	CCANNNNNNTGG	1 cut(s)	395
BstYI	RGATCY	2 cut(s)	209, 322
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	3 cut(s)	213, 388, 462
BtgZI	GCGATG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	71, 75
CfoI	GCGC	1 cut(s)	295
CseI	GACGC	1 cut(s)	182
CviAII	CATG	6 cut(s)	16, 70, 74, 214, 379, 389
CviJI	RGCY	6 cut(s)	8, 154, 260, 266, 365, 387
CviKI_1	RGCY	6 cut(s)	8, 154, 260, 266, 365, 387
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	211, 324
DpnII	GATC	2 cut(s)	209, 322
DraIII	CACNNNGTG	1 cut(s)	301
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
Eam1104I	CTCTTC	2 cut(s)	57, 420
EarI	CTCTTC	2 cut(s)	57, 420
Eco130I	CCWWGG	2 cut(s)	213, 388
Eco57I	CTGAAG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	83
EcoT14I	CCWWGG	2 cut(s)	213, 388
EcoT22I	ATGCAT	1 cut(s)	75
ErhI	CCWWGG	2 cut(s)	213, 388
FaeI	CATG	6 cut(s)	19, 73, 77, 217, 382, 392
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	6 cut(s)	15, 69, 73, 213, 378, 388
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	152, 177, 180
Fsp4HI	GCNGC	3 cut(s)	152, 177, 180
FspAI	RTGCGCAY	1 cut(s)	294
FspI	TGCGCA	1 cut(s)	294
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	3 cut(s)	152, 177, 180
HaeIII	GGCC	1 cut(s)	8
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	6 cut(s)	19, 73, 77, 217, 382, 392
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	1 cut(s)	412
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	2 cut(s)	52, 271
Hpy188III	TCNNGA	2 cut(s)	283, 483
Hpy8I	GTNNAC	2 cut(s)	52, 271
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	3 cut(s)	73, 179, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	6 cut(s)	19, 73, 77, 217, 382, 392
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	2 cut(s)	209, 322
LpnPI	CCDG	5 cut(s)	70, 77, 97, 168, 296
Lsp1109I	GCAGC	3 cut(s)	163, 163, 191
LweI	GCATC	1 cut(s)	240
MaeII	ACGT	1 cut(s)	450
MalI	GATC	2 cut(s)	211, 324
MboI	GATC	2 cut(s)	209, 322
MboII	GAAGA	3 cut(s)	74, 125, 407
MflI	RGATCY	2 cut(s)	209, 322
MhlI	GDGCHC	2 cut(s)	33, 461
MluCI	AATT	3 cut(s)	36, 241, 277
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	3 cut(s)	110, 115, 402
Mph1103I	ATGCAT	1 cut(s)	75
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	393
MspR9I	CCNGG	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	66
NcoI	CCATGG	2 cut(s)	213, 388
NdeII	GATC	2 cut(s)	209, 322
NlaIII	CATG	6 cut(s)	19, 73, 77, 217, 382, 392
NlaIV	GGNNCC	1 cut(s)	211
NsbI	TGCGCA	1 cut(s)	294
NsiI	ATGCAT	1 cut(s)	75
NspI	RCATGY	2 cut(s)	73, 77
PaeI	GCATGC	2 cut(s)	73, 77
PkrI	GCNGC	3 cut(s)	153, 178, 181
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Ppu21I	YACGTR	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	2 cut(s)	209, 322
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	3 cut(s)	152, 177, 180
Sau3AI	GATC	2 cut(s)	209, 322
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	2 cut(s)	33, 461
SetI	ASST	4 cut(s)	102, 262, 367, 453
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	393
SphI	GCATGC	2 cut(s)	73, 77
Sse9I	AATT	3 cut(s)	36, 241, 277
SsiI	CCGC	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	83
StyI	CCWWGG	2 cut(s)	213, 388
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	2 cut(s)	171, 194
TasI	AATT	3 cut(s)	36, 241, 277
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	3 cut(s)	151, 176, 179
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	252
XapI	RAATTY	2 cut(s)	241, 277
XceI	RCATGY	2 cut(s)	73, 77
XmiI	GTMKAC	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.