Rh3CG079000

Universal stress protein A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002806
Physical Location & Seq
Forward (+)
6170947 .. 6172766
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG079000.1

Sequence Viewer

Length: 438 bp
ATGGCTGTCGTGGCGGAGAAAGAGCGGAAGATCCTGGTGGCCGTCGACGAGGGCGAGGAGAGCATGTACGCTCTCTCCTGGTGCCTCAAGAACGTGGTTTCTCAAAATTCCAAAGATACCCTTATCCTGGTCTACGTTAAGCCCCCGAAGGCTGTGTACATGCCTCTAGATGGCACAGGTACGAGAGAGGGTCCGTCAGGGTATGTGTTTTCGACTGATATTTTTGCGGCGATGGAGATGTACAGCGGCCAGGTGGCCAGCTCCGTCGTCGAGAAGGCCAAGAAGATGTGCAGGGATGTTCTTCCTGAGCAGGATGTTAAGGTGGAGACGAGAGTAGAGAATGGTGATCCGAGGGATGTGATTTGCCATCTGGTGGAGCAGATCGCTGCTGATGTTCTTGTCATGGGTAGTCATGGCTATGGTCTCATCAAGAGGTAG

Protein Analysis

145

Amino Acids

15.97

Weight (kDa)

5.22

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 9 - 145 3.1e-18 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 373
AccBSI CCGCTC 1 cut(s) 25
AccI GTMKAC 2 cut(s) 45, 132
AciI CCGC 4 cut(s) 14, 25, 227, 246
AclWI GGATC 2 cut(s) 25, 341
AcoI YGGCCR 3 cut(s) 39, 247, 255
AcsI RAATTY 1 cut(s) 106
AfaI GTAC 4 cut(s) 68, 158, 181, 242
AfiI CCNNNNNNNGG 3 cut(s) 127, 170, 373
AjnI CCWGG 4 cut(s) 33, 77, 126, 249
AluBI AGCT 1 cut(s) 261
AluI AGCT 1 cut(s) 261
Alw26I GTCTC 2 cut(s) 320, 428
AlwI GGATC 2 cut(s) 25, 341
AoxI GGCC 4 cut(s) 39, 247, 255, 276
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 1 cut(s) 191
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 1 cut(s) 81
BarI GAAGNNNNNNTAC 2 cut(s) 140, 172
BbvI GCAGC 1 cut(s) 373
BccI CCATC 3 cut(s) 164, 226, 375
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 4 cut(s) 35, 79, 128, 251
BcoDI GTCTC 2 cut(s) 320, 428
BfaI CTAG 1 cut(s) 167
BisI GCNGC 3 cut(s) 228, 247, 387
BlsI GCNGC 3 cut(s) 229, 248, 388
Bme1390I CCNGG 4 cut(s) 35, 79, 128, 251
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 2 cut(s) 83, 192
BmrFI CCNGG 4 cut(s) 35, 79, 128, 251
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 350
BsaXI ACNNNNNCTCC 4 cut(s) 50, 59, 80, 89
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 170, 373
BseBI CCWGG 4 cut(s) 35, 79, 128, 251
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 3 cut(s) 301, 319, 361
BseLI CCNNNNNNNGG 3 cut(s) 127, 170, 373
BseMII CTCAG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 373
BsgI GTGCAG 1 cut(s) 310
BshFI GGCC 4 cut(s) 41, 249, 257, 278
BshNI GGYRCC 1 cut(s) 81
BslI CCNNNNNNNGG 3 cut(s) 127, 170, 373
BsmAI GTCTC 2 cut(s) 320, 428
BsmBI CGTCTC 1 cut(s) 320
BsnI GGCC 4 cut(s) 41, 249, 257, 278
Bso31I GGTCTC 1 cut(s) 428
Bsp1407I TGTACA 2 cut(s) 156, 240
Bsp143I GATC 3 cut(s) 30, 346, 381
BspACI CCGC 4 cut(s) 14, 25, 227, 246
BspANI GGCC 4 cut(s) 41, 249, 257, 278
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 83, 192
BspPI GGATC 2 cut(s) 25, 341
BspT107I GGYRCC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 428
BsrBI CCGCTC 1 cut(s) 25
BsrGI TGTACA 2 cut(s) 156, 240
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 3 cut(s) 30, 346, 381
Bst2UI CCWGG 4 cut(s) 35, 79, 128, 251
BstAUI TGTACA 2 cut(s) 156, 240
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 3 cut(s) 301, 319, 361
BstKTI GATC 3 cut(s) 33, 349, 384
BstMAI GTCTC 2 cut(s) 320, 428
BstMBI GATC 3 cut(s) 30, 346, 381
BstMWI GCNNNNNNNGC 2 cut(s) 11, 60
BstNI CCWGG 4 cut(s) 35, 79, 128, 251
BstNSI RCATGY 2 cut(s) 67, 163
BstSCI CCNGG 4 cut(s) 33, 77, 126, 249
BstV1I GCAGC 1 cut(s) 373
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 4 cut(s) 41, 249, 257, 278
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 3 cut(s) 301, 319, 361
Cac8I GCNNGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 4 cut(s) 67, 157, 180, 241
CviAII CATG 4 cut(s) 64, 160, 403, 413
CviJI RGCY 9 cut(s) 5, 41, 142, 152, 249, 257, 261, 278, 417
CviKI_1 RGCY 9 cut(s) 5, 41, 142, 152, 249, 257, 261, 278, 417
CviQI GTAC 4 cut(s) 67, 157, 180, 241
DdeI CTNAG 1 cut(s) 306
DpnI GATC 3 cut(s) 32, 348, 383
DpnII GATC 3 cut(s) 30, 346, 381
EaeI YGGCCR 3 cut(s) 39, 247, 255
EciI GGCGGA 1 cut(s) 29
Eco31I GGTCTC 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 191
EcoRII CCWGG 4 cut(s) 33, 77, 126, 249
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 4 cut(s) 67, 163, 406, 416
FaiI YATR 6 cut(s) 65, 161, 204, 404, 414, 420
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 4 cut(s) 63, 159, 402, 412
FblI GTMKAC 2 cut(s) 45, 132
Fnu4HI GCNGC 3 cut(s) 228, 247, 387
FokI GGATG 3 cut(s) 308, 326, 368
Fsp4HI GCNGC 3 cut(s) 228, 247, 387
FspBI CTAG 1 cut(s) 167
GluI GCNGC 3 cut(s) 228, 247, 387
HaeIII GGCC 4 cut(s) 41, 249, 257, 278
Hin1II CATG 4 cut(s) 67, 163, 406, 416
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 3 cut(s) 46, 133, 157
Hpy188I TCNGA 1 cut(s) 351
Hpy188III TCNNGA 5 cut(s) 88, 167, 271, 305, 430
Hpy8I GTNNAC 3 cut(s) 46, 133, 157
Hpy99I CGWCG 4 cut(s) 47, 50, 269, 272
HpyAV CCTTC 2 cut(s) 142, 268
HpyCH4IV ACGT 2 cut(s) 93, 135
HpyCH4V TGCA 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 60
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 2 cut(s) 93, 135
Hsp92II CATG 4 cut(s) 67, 163, 406, 416
Kzo9I GATC 3 cut(s) 30, 346, 381
LmnI GCTCC 2 cut(s) 266, 376
Lsp1109I GCAGC 1 cut(s) 373
MaeI CTAG 1 cut(s) 167
MaeII ACGT 2 cut(s) 93, 135
MalI GATC 3 cut(s) 32, 348, 383
MbiI CCGCTC 1 cut(s) 25
MboI GATC 3 cut(s) 30, 346, 381
MboII GAAGA 3 cut(s) 40, 293, 295
MflI RGATCY 1 cut(s) 30
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 1 cut(s) 106
MluNI TGGCCA 1 cut(s) 257
MnlI CCTC 7 cut(s) 43, 49, 95, 174, 181, 345, 426
Mox20I TGGCCA 1 cut(s) 257
MscI TGGCCA 1 cut(s) 257
MseI TTAA 2 cut(s) 138, 318
MslI CAYNNNNRTG 1 cut(s) 417
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 246
MspR9I CCNGG 4 cut(s) 35, 79, 128, 251
MvaI CCWGG 4 cut(s) 35, 79, 128, 251
MwoI GCNNNNNNNGC 2 cut(s) 11, 60
NdeII GATC 3 cut(s) 30, 346, 381
NlaIII CATG 4 cut(s) 67, 163, 406, 416
NlaIV GGNNCC 2 cut(s) 83, 192
NspI RCATGY 2 cut(s) 67, 163
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PflMI CCANNNNNTGG 1 cut(s) 373
PkrI GCNGC 3 cut(s) 229, 248, 388
Psp6I CCWGG 4 cut(s) 33, 77, 126, 249
PspGI CCWGG 4 cut(s) 33, 77, 126, 249
PspN4I GGNNCC 2 cut(s) 83, 192
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 4 cut(s) 68, 158, 181, 242
RsaNI GTAC 4 cut(s) 67, 157, 180, 241
RseI CAYNNNNRTG 1 cut(s) 417
SalI GTCGAC 1 cut(s) 44
SaqAI TTAA 2 cut(s) 138, 318
SatI GCNGC 3 cut(s) 228, 247, 387
Sau3AI GATC 3 cut(s) 30, 346, 381
Sau96I GGNCC 1 cut(s) 191
ScrFI CCNGG 4 cut(s) 35, 79, 128, 251
SetI ASST 7 cut(s) 96, 138, 181, 255, 263, 324, 437
SgrDI CGTCGACG 1 cut(s) 44
SinI GGWCC 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 106
SsiI CCGC 4 cut(s) 14, 25, 227, 246
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 4 cut(s) 33, 77, 126, 249
TaiI ACGT 2 cut(s) 96, 138
TaqI TCGA 3 cut(s) 45, 212, 270
TasI AATT 1 cut(s) 106
TatI WGTACW 2 cut(s) 156, 240
TauI GCSGC 2 cut(s) 230, 249
Tru1I TTAA 2 cut(s) 138, 318
Tru9I TTAA 2 cut(s) 138, 318
TseI GCWGC 1 cut(s) 386
TspGWI ACGGA 2 cut(s) 183, 253
Van91I CCANNNNNTGG 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 1 cut(s) 106
XbaI TCTAGA 1 cut(s) 166
XceI RCATGY 2 cut(s) 67, 163
XmiI GTMKAC 2 cut(s) 45, 132
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.