Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002806

Physical Location & Seq

Genomic Coordinates Reverse (-)

21307412 .. 21308551

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g19480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGACTGACGTGGCAGAAAGCGAAAGGAGGATCCTCGTGGCCGTCGACGAAGGCGAGGAGAGCATGCATGCGCTGTCGTGGTGCCTGAAGAACATTGTCGCGCAAAATTCCAAAGATACCCTTATCCTACTCTACGCCAAGCCCCCGCGAGCAGTGTTCACCGCTCTGGACGGCACAGGTAGGAGGAGCGAGGATCCATCCGGGTATTTGTTTTCGTCTGAGACTTGGGCGGCAATGGAGAAGTACGCTGCTGATGTGGCGGACTGCGTGATGGAGAAGGCCAAGAAGACGTGCAGGGACCTCCACCAGGATGTTAAGGTGGAGACGAAAGTAGAGGACGGAGATCCGAGGGATGTCATTTGCCAGATGGCAGAGCAGCTTCGTGCTGACGTGTTGGTCGTGGGAAGCCACGGTTACGGCGGCATCAAAAGGGCTTTCCTTGGGAGTGTGAGCAATCACTGTGCACAGAATGTCAAGTGCCCCGTCTTGATTGTCAAGAAGCCAAAAACAAGTGCCGGGAGCAAAAGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

178

Amino Acids

19.36

Weight (kDa)

6.11

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62550
fragaria_vesca	FvH4_5g39370 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300
malus_domestica	MD03G1296200.v1.1 MD04G1194600.v1.1 MD11G1315600.v1.1 MD12G1206900.v1.1
prunus_persica	Prupe.6G314600_v2.0.a1 Prupe.6G314600_v2.0.a1 Prupe.8G271100_v2.0.a1
pyrus_communis	pycom04g17190 pycom12g19480
rosa_chinensis	RchiOBHm_Chr3g0456911 RchiOBHm_Chr7g0241661
rosa_laevigata	RLG00000000556 RLG00000025265 RLG00000025268
rosa_multiflora	Rmu_sc0000133.1_g000003 Rmu_sc0002268.1_g000009 Rmu_sc0019791.1_g000001 Rmu_sc0026340.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218840 Rroxscaffold_6G00422380
rosa_rugosa	Rorug03G0017000 Rorug03G0017000 Rorug07G0346000
rosa_samantha	Rh3AG077300 Rh3BG079100 Rh3CG079000 Rh3DG081000 Rh7AG500600 Rh7BG471700 Rh7CG517000 Rh7DG485500
rosa_wichuraiana	Rw3G006630 Rw7G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	395
AccB1I	GGYRCC	1 cut(s)	81
AccBSI	CCGCTC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	45
AccII	CGCG	2 cut(s)	101, 148
AciI	CCGC	5 cut(s)	146, 162, 230, 260, 420
AclWI	GGATC	5 cut(s)	25, 38, 188, 201, 338
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	390
AjiI	CACGTC	3 cut(s)	10, 291, 391
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	1 cut(s)	379
AluI	AGCT	1 cut(s)	379
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	2 cut(s)	215, 317
Alw44I	GTGCAC	1 cut(s)	462
AlwI	GGATC	5 cut(s)	25, 38, 188, 201, 338
AoxI	GGCC	2 cut(s)	39, 279
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	2 cut(s)	248, 376
ApoI	RAATTY	1 cut(s)	106
AspLEI	GCGC	2 cut(s)	73, 103
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	2 cut(s)	202, 517
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	298
BaeGI	GKGCMC	2 cut(s)	466, 482
BamHI	GGATCC	2 cut(s)	30, 193
BanI	GGYRCC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	2 cut(s)	235, 388
BccI	CCATC	3 cut(s)	205, 265, 361
BceAI	ACGGC	3 cut(s)	26, 187, 433
BciT130I	CCWGG	1 cut(s)	308
BcnI	CCSGG	2 cut(s)	202, 517
BcoDI	GTCTC	2 cut(s)	215, 317
BisI	GCNGC	4 cut(s)	231, 249, 377, 421
BlsI	GCNGC	4 cut(s)	232, 250, 378, 422
Bme1390I	CCNGG	3 cut(s)	202, 308, 517
Bme18I	GGWCC	1 cut(s)	298
BmgBI	CACGTC	3 cut(s)	10, 291, 391
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	4 cut(s)	32, 83, 195, 299
BmrFI	CCNGG	3 cut(s)	202, 308, 517
BmsI	GCATC	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	293
BpuMI	CCSGG	2 cut(s)	202, 517
BsaJI	CCNNGG	3 cut(s)	347, 409, 439
BsaXI	ACNNNNNCTCC	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	347, 409, 439
BseGI	GGATG	3 cut(s)	197, 316, 358
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	2 cut(s)	71, 199
BseSI	GKGCMC	2 cut(s)	466, 482
BseXI	GCAGC	2 cut(s)	235, 388
BsgI	GTGCAG	1 cut(s)	313
Bsh1236I	CGCG	2 cut(s)	101, 148
BshFI	GGCC	2 cut(s)	41, 281
BshNI	GGYRCC	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	466
BsiSI	CCGG	2 cut(s)	201, 516
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	2 cut(s)	215, 317
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	41, 281
Bsp1286I	GDGCHC	2 cut(s)	466, 482
Bsp143I	GATC	3 cut(s)	30, 193, 343
BspACI	CCGC	5 cut(s)	146, 162, 230, 260, 420
BspANI	GGCC	2 cut(s)	41, 281
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	2 cut(s)	101, 148
BspLI	GGNNCC	4 cut(s)	32, 83, 195, 299
BspPI	GGATC	5 cut(s)	25, 38, 188, 201, 338
BspT107I	GGYRCC	1 cut(s)	81
BsrBI	CCGCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	240
BssECI	CCNNGG	3 cut(s)	347, 409, 439
BssMI	GATC	3 cut(s)	30, 193, 343
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	439
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	413, 461
BstC8I	GCNNGC	3 cut(s)	65, 69, 150
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	409
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstF5I	GGATG	3 cut(s)	197, 316, 358
BstFNI	CGCG	2 cut(s)	101, 148
BstHHI	GCGC	2 cut(s)	73, 103
BstKTI	GATC	3 cut(s)	33, 196, 346
BstMAI	GTCTC	2 cut(s)	215, 317
BstMBI	GATC	3 cut(s)	30, 193, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 257
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	2 cut(s)	67, 71
BstSCI	CCNGG	3 cut(s)	200, 306, 515
BstSLI	GKGCMC	2 cut(s)	466, 482
BstUI	CGCG	2 cut(s)	101, 148
BstV1I	GCAGC	2 cut(s)	235, 388
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	3 cut(s)	30, 193, 343
BstYI	RGATCY	3 cut(s)	30, 193, 343
BsuRI	GGCC	2 cut(s)	41, 281
BtgI	CCRYGG	1 cut(s)	409
BtrI	CACGTC	3 cut(s)	10, 291, 391
BtsCI	GGATG	3 cut(s)	197, 316, 358
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	159, 457
Cac8I	GCNNGC	3 cut(s)	65, 69, 150
CfoI	GCGC	2 cut(s)	73, 103
Cfr13I	GGNCC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	2 cut(s)	64, 68
CviJI	RGCY	7 cut(s)	41, 142, 281, 379, 408, 434, 502
CviKI_1	RGCY	7 cut(s)	41, 142, 281, 379, 408, 434, 502
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	3 cut(s)	32, 195, 345
DpnII	GATC	3 cut(s)	30, 193, 343
DrdI	GACNNNNNNGTC	1 cut(s)	395
DseDI	GACNNNNNNGTC	1 cut(s)	395
EaeI	YGGCCR	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	107
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	439
EcoT22I	ATGCAT	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	439
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	2 cut(s)	67, 71
FaiI	YATR	2 cut(s)	65, 69
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	2 cut(s)	63, 67
FauI	CCCGC	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	4 cut(s)	231, 249, 377, 421
FokI	GGATG	3 cut(s)	184, 323, 365
Fsp4HI	GCNGC	4 cut(s)	231, 249, 377, 421
GlaI	GCGC	2 cut(s)	72, 102
GluI	GCNGC	4 cut(s)	231, 249, 377, 421
HaeIII	GGCC	2 cut(s)	41, 281
HapII	CCGG	2 cut(s)	201, 516
HhaI	GCGC	2 cut(s)	73, 103
Hin1II	CATG	2 cut(s)	67, 71
Hin6I	GCGC	2 cut(s)	71, 101
HinP1I	GCGC	2 cut(s)	71, 101
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HpaII	CCGG	2 cut(s)	201, 516
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	3 cut(s)	46, 159, 464
Hpy188I	TCNGA	2 cut(s)	220, 348
Hpy188III	TCNNGA	3 cut(s)	167, 487, 496
Hpy8I	GTNNAC	3 cut(s)	46, 159, 464
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyAV	CCTTC	2 cut(s)	44, 271
HpyCH4III	ACNGT	2 cut(s)	413, 461
HpyCH4IV	ACGT	3 cut(s)	9, 290, 390
HpyCH4V	TGCA	3 cut(s)	67, 294, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 257
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	3 cut(s)	9, 290, 390
Hsp92II	CATG	2 cut(s)	67, 71
HspAI	GCGC	2 cut(s)	71, 101
Kzo9I	GATC	3 cut(s)	30, 193, 343
LmnI	GCTCC	2 cut(s)	186, 519
LpnPI	CCDG	9 cut(s)	98, 152, 162, 214, 280, 293, 320, 377, 529
Lsp1109I	GCAGC	2 cut(s)	235, 388
LweI	GCATC	1 cut(s)	432
MaeII	ACGT	3 cut(s)	9, 290, 390
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	3 cut(s)	32, 195, 345
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	3 cut(s)	30, 193, 343
MboII	GAAGA	2 cut(s)	100, 298
MflI	RGATCY	3 cut(s)	30, 193, 343
MhlI	GDGCHC	2 cut(s)	466, 482
MluCI	AATT	1 cut(s)	106
MnlI	CCTC	8 cut(s)	21, 44, 49, 177, 184, 311, 328, 342
Mph1103I	ATGCAT	1 cut(s)	69
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	2 cut(s)	201, 516
MspR9I	CCNGG	3 cut(s)	202, 308, 517
MvaI	CCWGG	1 cut(s)	308
MvnI	CGCG	2 cut(s)	101, 148
MwoI	GCNNNNNNNGC	2 cut(s)	60, 257
NciI	CCSGG	2 cut(s)	202, 517
NdeII	GATC	3 cut(s)	30, 193, 343
NlaIII	CATG	2 cut(s)	67, 71
NlaIV	GGNNCC	4 cut(s)	32, 83, 195, 299
NsiI	ATGCAT	1 cut(s)	69
NspI	RCATGY	2 cut(s)	67, 71
PaeI	GCATGC	2 cut(s)	67, 71
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 51, 396
PkrI	GCNGC	4 cut(s)	232, 250, 378, 422
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	4 cut(s)	32, 83, 195, 299
PspPI	GGNCC	1 cut(s)	298
PspPPI	RGGWCCY	1 cut(s)	298
PsuI	RGATCY	3 cut(s)	30, 193, 343
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	309
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	4 cut(s)	231, 249, 377, 421
Sau3AI	GATC	3 cut(s)	30, 193, 343
Sau96I	GGNCC	1 cut(s)	298
ScrFI	CCNGG	3 cut(s)	202, 308, 517
SduI	GDGCHC	2 cut(s)	466, 482
SetI	ASST	7 cut(s)	12, 181, 293, 303, 321, 381, 393
SfaNI	GCATC	1 cut(s)	432
SgrDI	CGTCGACG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	309
SphI	GCATGC	2 cut(s)	67, 71
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	5 cut(s)	146, 162, 230, 260, 420
StyD4I	CCNGG	3 cut(s)	200, 306, 515
StyI	CCWWGG	1 cut(s)	439
TaaI	ACNGT	2 cut(s)	413, 461
TaiI	ACGT	3 cut(s)	12, 293, 393
TaqI	TCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	106
TauI	GCSGC	2 cut(s)	233, 423
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	2 cut(s)	159, 464
TseI	GCWGC	2 cut(s)	248, 376
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	2 cut(s)	159, 464
VneI	GTGCAC	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	298
XagI	CCTNNNNNAGG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	2 cut(s)	67, 71
XmiI	GTMKAC	1 cut(s)	45
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.