Rh7AG500600

Universal stress protein A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002806
Physical Location & Seq
Reverse (-)
70023814 .. 70024756
943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG500600.1

Sequence Viewer

Length: 516 bp
ATGGAAGGGGATATTAGTATGAAGAAAATCGTGGTGGCAGTGGACGAGAGCGAAGAGAGCATGCACGCACTTTCCTGGTGTCTGGGAAACCTTTCCTCTCAAAAAGCCACTGCTGCTGCCAATACCAGTACCAGTCTTGTTCTTCTCTATGTCAAACCACCACCTCCACTTCATTCCTCCTATGACGCTGCAGGATACATGTTTTCGAAGAACGATGTAGTCGCCGCGATGGAGAAGTACGGGAATGACATGATAAATTCAGTGATGCAACGAGCTGAAGCTGTCTACAAAAACTTCAATGTCAACGCCAATGTAAATATCGAGAGAGTGGTTGGCAGCGGAGATCCGAAAGATGTGATTTGCAATGCAGTCGAGAAGCTTCGAGCTGATACCTTGGTCATGGGATCCCATGGCTATGGTTTCTTCAAGAGGGCACTTCTTGGAAGCGTGAGTGATTATTGTGCGAAACACGTCGAGTGTCCAGTGGTGATTGTCAAGCATCCTGACCACAAATAG

Protein Analysis

171

Amino Acids

18.6

Weight (kDa)

6.29

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 7 - 166 4.8e-31 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 285
AccII CGCG 1 cut(s) 227
AciI CCGC 2 cut(s) 225, 339
AclWI GGATC 3 cut(s) 338, 399, 412
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 2 cut(s) 130, 239
AflIII ACRYGT 2 cut(s) 198, 469
AgsI TTSAA 2 cut(s) 298, 427
AjiI CACGTC 1 cut(s) 472
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 4 cut(s) 275, 281, 379, 386
AluI AGCT 4 cut(s) 275, 281, 379, 386
AlwI GGATC 3 cut(s) 338, 399, 412
ApeKI GCWGC 4 cut(s) 113, 116, 188, 336
ApoI RAATTY 1 cut(s) 256
Asp700I GAANNNNTTC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 499
AsuII TTCGAA 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 436
BaeI ACNNNNGTAYC 2 cut(s) 381, 414
BamHI GGATCC 1 cut(s) 404
BbvI GCAGC 4 cut(s) 100, 103, 175, 348
BccI CCATC 1 cut(s) 223
BcgI CGANNNNNNTGC 2 cut(s) 352, 386
BciT130I CCWGG 1 cut(s) 76
BciVI GTATCC 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 189
BfuI GTATCC 1 cut(s) 188
BisI GCNGC 5 cut(s) 114, 117, 189, 225, 337
BlsI GCNGC 5 cut(s) 115, 118, 190, 226, 338
Bme1390I CCNGG 1 cut(s) 76
BmgBI CACGTC 1 cut(s) 472
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 2 cut(s) 255, 508
Bpu14I TTCGAA 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 393, 409
Bse1I ACTGG 3 cut(s) 126, 132, 482
Bse3DI GCAATG 1 cut(s) 370
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 393, 409
BseGI GGATG 1 cut(s) 499
BseMI GCAATG 1 cut(s) 370
BseNI ACTGG 3 cut(s) 126, 132, 482
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 4 cut(s) 100, 103, 175, 348
Bsh1236I CGCG 1 cut(s) 227
Bsp119I TTCGAA 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 2 cut(s) 343, 404
Bsp19I CCATGG 1 cut(s) 409
BspACI CCGC 2 cut(s) 225, 339
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 406
BspMAI CTGCAG 1 cut(s) 193
BspPI GGATC 3 cut(s) 338, 399, 412
BspT104I TTCGAA 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 370
BsrI ACTGG 3 cut(s) 126, 132, 482
BssECI CCNNGG 2 cut(s) 393, 409
BssMI GATC 2 cut(s) 343, 404
BssT1I CCWWGG 2 cut(s) 393, 409
Bst2UI CCWGG 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 48
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 62, 66
BstDSI CCRYGG 1 cut(s) 409
BstF5I GGATG 1 cut(s) 499
BstFNI CGCG 1 cut(s) 227
BstKTI GATC 2 cut(s) 346, 407
BstMBI GATC 2 cut(s) 343, 404
BstMWI GCNNNNNNNGC 2 cut(s) 57, 113
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 2 cut(s) 64, 202
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 189
BstSLI GKGCMC 1 cut(s) 436
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 100, 103, 175, 348
BstX2I RGATCY 2 cut(s) 343, 404
BstXI CCANNNNNNTGG 1 cut(s) 416
BstYI RGATCY 2 cut(s) 343, 404
BsuI GTATCC 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 409
BtgZI GCGATG 1 cut(s) 242
BtrI CACGTC 1 cut(s) 472
BtsCI GGATG 1 cut(s) 499
BtsI GCAGTG 2 cut(s) 45, 108
BtsIMutI CAGTG 4 cut(s) 45, 108, 267, 489
Cac8I GCNNGC 2 cut(s) 62, 66
CseI GACGC 1 cut(s) 194
Csp6I GTAC 2 cut(s) 129, 238
CviAII CATG 5 cut(s) 61, 199, 250, 400, 410
CviJI RGCY 6 cut(s) 107, 275, 281, 379, 386, 414
CviKI_1 RGCY 6 cut(s) 107, 275, 281, 379, 386, 414
CviQI GTAC 2 cut(s) 129, 238
DpnI GATC 2 cut(s) 345, 406
DpnII GATC 2 cut(s) 343, 404
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 2 cut(s) 393, 409
Eco57I CTGAAG 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 74
EcoT14I CCWWGG 2 cut(s) 393, 409
ErhI CCWWGG 2 cut(s) 393, 409
FaeI CATG 5 cut(s) 64, 202, 253, 403, 413
FaiI YATR 9 cut(s) 20, 62, 150, 183, 200, 251, 401, 411, 417
FatI CATG 5 cut(s) 60, 198, 249, 399, 409
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 5 cut(s) 114, 117, 189, 225, 337
FokI GGATG 1 cut(s) 486
Fsp4HI GCNGC 5 cut(s) 114, 117, 189, 225, 337
GluI GCNGC 5 cut(s) 114, 117, 189, 225, 337
HgaI GACGC 1 cut(s) 194
Hin1II CATG 5 cut(s) 64, 202, 253, 403, 413
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 377
HphI GGTGA 1 cut(s) 499
Hpy166II GTNNAC 3 cut(s) 43, 286, 304
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 4 cut(s) 322, 373, 427, 503
Hpy8I GTNNAC 3 cut(s) 43, 286, 304
Hpy99I CGWCG 1 cut(s) 476
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 5 cut(s) 64, 191, 268, 363, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 113
HpySE526I ACGT 1 cut(s) 471
Hsp92II CATG 5 cut(s) 64, 202, 253, 403, 413
Kzo9I GATC 2 cut(s) 343, 404
LpnPI CCDG 7 cut(s) 61, 68, 88, 139, 145, 177, 495
Lsp1109I GCAGC 4 cut(s) 100, 103, 175, 348
LweI GCATC 2 cut(s) 255, 508
MaeII ACGT 1 cut(s) 471
MalI GATC 2 cut(s) 345, 406
MboI GATC 2 cut(s) 343, 404
MboII GAAGA 5 cut(s) 34, 65, 134, 220, 415
MflI RGATCY 2 cut(s) 343, 404
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 1 cut(s) 256
MnlI CCTC 4 cut(s) 106, 174, 187, 423
MroXI GAANNNNTTC 1 cut(s) 91
MslI CAYNNNNRTG 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 57, 113
NcoI CCATGG 1 cut(s) 409
NdeII GATC 2 cut(s) 343, 404
NlaIII CATG 5 cut(s) 64, 202, 253, 403, 413
NlaIV GGNNCC 1 cut(s) 406
NspI RCATGY 2 cut(s) 64, 202
NspV TTCGAA 1 cut(s) 206
PaeI GCATGC 1 cut(s) 64
PciI ACATGT 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 91
PkrI GCNGC 5 cut(s) 115, 118, 190, 226, 338
PscI ACATGT 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 406
PstI CTGCAG 1 cut(s) 193
PsuI RGATCY 2 cut(s) 343, 404
RsaI GTAC 2 cut(s) 130, 239
RsaNI GTAC 2 cut(s) 129, 238
RseI CAYNNNNRTG 1 cut(s) 414
SatI GCNGC 5 cut(s) 114, 117, 189, 225, 337
Sau3AI GATC 2 cut(s) 343, 404
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 1 cut(s) 436
SetI ASST 8 cut(s) 93, 166, 277, 283, 381, 388, 395, 474
SfaNI GCATC 2 cut(s) 255, 508
SfcI CTRYAG 1 cut(s) 189
SfuI TTCGAA 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 414
SphI GCATGC 1 cut(s) 64
Sse9I AATT 1 cut(s) 256
SsiI CCGC 2 cut(s) 225, 339
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 2 cut(s) 393, 409
TaiI ACGT 1 cut(s) 474
TaqI TCGA 5 cut(s) 206, 321, 372, 382, 474
TasI AATT 1 cut(s) 256
TauI GCSGC 1 cut(s) 227
TscAI CASTG 4 cut(s) 45, 115, 267, 489
TseI GCWGC 4 cut(s) 113, 116, 188, 336
TspDTI ATGAA 2 cut(s) 35, 161
TspRI CASTG 4 cut(s) 45, 115, 267, 489
XapI RAATTY 1 cut(s) 256
XceI RCATGY 2 cut(s) 64, 202
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.