FvH4_6g07300

Universal stress protein A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002806
Physical Location & Seq
Forward (+)
4373439 .. 4375303
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07300.t2

Sequence Viewer

Length: 525 bp
ATGGCTGACGTGGCAGAGAAAGAGCGGAGGATCCTGGTGGCCGTCGACGAAGGGGAGGAGAGCATGTACGCTCTCTCATGGTGTCTTGGGAACGTGGTTTCTTCCAAAGATACCTTAATCCTGGTGTACGTTAAGCCCCCAAAAGCTGTGTACATGCCTCTAGATGGCACAGGTAGGAGTCAGAGTTCTTCAGGGTATATGTTTTCGAGTGATTTATATGCGACGATGGAGAATTACAGCAACGAGGTGGCCAACAGCGTCATCGAGAAGGCCAAGAACAAGTGCAGGGATGTTCTTCAGGAGCAGGATGTTAAGGTGGAGACGAGAATAGAGAATGGTGATCCAAGGGATGTGATTTGCCATCTGGTGGAGCAGCTTGGTGCTCATATTTTGGTCATGGGTAGCCGTGGCTATGGTCTCATCAAGAGGGCTTTTCTTGGAAGTGTTAGCAATCACTGTGCGCAGAATGTGAATTGTCCTGTGTTGATTGTGAAGAAGCCGAAAACCAATAATGGGAGCAAGTGA

Protein Analysis

175

Amino Acids

19.17

Weight (kDa)

6.82

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 9 - 158 9.7e-31 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 462
AccB7I CCANNNNNTGG 1 cut(s) 367
AccBSI CCGCTC 1 cut(s) 25
AccI GTMKAC 1 cut(s) 45
AciI CCGC 1 cut(s) 25
AclWI GGATC 3 cut(s) 25, 38, 335
AcoI YGGCCR 2 cut(s) 39, 249
AcuI CTGAAG 2 cut(s) 174, 281
AfaI GTAC 3 cut(s) 68, 128, 152
AfiI CCNNNNNNNGG 3 cut(s) 164, 367, 513
AjiI CACGTC 1 cut(s) 10
AjnI CCWGG 2 cut(s) 33, 120
AloI GAACNNNNNNTCC 2 cut(s) 169, 201
AluBI AGCT 2 cut(s) 146, 376
AluI AGCT 2 cut(s) 146, 376
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 2 cut(s) 314, 422
AlwI GGATC 3 cut(s) 25, 38, 335
AoxI GGCC 3 cut(s) 39, 249, 270
ApeKI GCWGC 1 cut(s) 373
AspLEI GCGC 1 cut(s) 463
AsuHPI GGTGA 1 cut(s) 350
BalI TGGCCA 1 cut(s) 251
BamHI GGATCC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 1 cut(s) 385
BccI CCATC 3 cut(s) 158, 220, 369
BceAI ACGGC 2 cut(s) 26, 390
BciT130I CCWGG 2 cut(s) 35, 122
BcoDI GTCTC 2 cut(s) 314, 422
BfaI CTAG 1 cut(s) 161
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 2 cut(s) 35, 122
BmgBI CACGTC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 2 cut(s) 35, 122
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 344, 406
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 169, 199
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 367, 513
BseBI CCWGG 2 cut(s) 35, 122
BseDI CCNNGG 2 cut(s) 344, 406
BseGI GGATG 3 cut(s) 295, 313, 355
BseLI CCNNNNNNNGG 3 cut(s) 164, 367, 513
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 304
BshFI GGCC 3 cut(s) 41, 251, 272
BsiHKAI GWGCWC 1 cut(s) 385
BslI CCNNNNNNNGG 3 cut(s) 164, 367, 513
BsmAI GTCTC 2 cut(s) 314, 422
BsmBI CGTCTC 1 cut(s) 314
BsnI GGCC 3 cut(s) 41, 251, 272
Bso31I GGTCTC 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 385
Bsp1407I TGTACA 1 cut(s) 150
Bsp143I GATC 2 cut(s) 30, 340
BspACI CCGC 1 cut(s) 25
BspANI GGCC 3 cut(s) 41, 251, 272
BspLI GGNNCC 1 cut(s) 32
BspPI GGATC 3 cut(s) 25, 38, 335
BspTNI GGTCTC 1 cut(s) 422
BsrBI CCGCTC 1 cut(s) 25
BsrGI TGTACA 1 cut(s) 150
BssECI CCNNGG 2 cut(s) 344, 406
BssMI GATC 2 cut(s) 30, 340
BssT1I CCWWGG 1 cut(s) 344
Bst2UI CCWGG 2 cut(s) 35, 122
Bst4CI ACNGT 1 cut(s) 458
BstAUI TGTACA 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 3 cut(s) 295, 313, 355
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 2 cut(s) 33, 343
BstMAI GTCTC 2 cut(s) 314, 422
BstMBI GATC 2 cut(s) 30, 340
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 35, 122
BstNSI RCATGY 2 cut(s) 67, 157
BstSCI CCNGG 2 cut(s) 33, 120
BstV1I GCAGC 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BsuRI GGCC 3 cut(s) 41, 251, 272
BtgI CCRYGG 1 cut(s) 406
BtrI CACGTC 1 cut(s) 10
BtsCI GGATG 3 cut(s) 295, 313, 355
BtsIMutI CAGTG 1 cut(s) 454
CfoI GCGC 1 cut(s) 463
CseI GACGC 1 cut(s) 247
Csp6I GTAC 3 cut(s) 67, 127, 151
CviAII CATG 4 cut(s) 64, 78, 154, 397
CviQI GTAC 3 cut(s) 67, 127, 151
DpnI GATC 2 cut(s) 32, 342
DpnII GATC 2 cut(s) 30, 340
EaeI YGGCCR 2 cut(s) 39, 249
Eco130I CCWWGG 1 cut(s) 344
Eco31I GGTCTC 1 cut(s) 422
Eco57I CTGAAG 2 cut(s) 174, 281
EcoRII CCWGG 2 cut(s) 33, 120
EcoT14I CCWWGG 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 344
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 4 cut(s) 67, 81, 157, 400
FatI CATG 4 cut(s) 63, 77, 153, 396
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 374
FokI GGATG 3 cut(s) 302, 320, 362
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 1 cut(s) 161
FspI TGCGCA 1 cut(s) 462
GlaI GCGC 1 cut(s) 462
GluI GCNGC 1 cut(s) 374
HaeIII GGCC 3 cut(s) 41, 251, 272
HgaI GACGC 1 cut(s) 247
HhaI GCGC 1 cut(s) 463
Hin1II CATG 4 cut(s) 67, 81, 157, 400
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 1 cut(s) 178
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 3 cut(s) 46, 127, 151
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 4 cut(s) 161, 265, 299, 424
Hpy8I GTNNAC 3 cut(s) 46, 127, 151
Hpy99I CGWCG 3 cut(s) 47, 50, 226
HpyAV CCTTC 2 cut(s) 44, 262
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4IV ACGT 3 cut(s) 9, 93, 129
HpyCH4V TGCA 1 cut(s) 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 3 cut(s) 9, 93, 129
Hsp92II CATG 4 cut(s) 67, 81, 157, 400
HspAI GCGC 1 cut(s) 461
Kzo9I GATC 2 cut(s) 30, 340
LmnI GCTCC 3 cut(s) 301, 370, 516
Lsp1109I GCAGC 1 cut(s) 385
MaeI CTAG 1 cut(s) 161
MaeII ACGT 3 cut(s) 9, 93, 129
MalI GATC 2 cut(s) 32, 342
MbiI CCGCTC 1 cut(s) 25
MboI GATC 2 cut(s) 30, 340
MboII GAAGA 4 cut(s) 93, 180, 287, 505
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 385
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 2 cut(s) 232, 472
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 5 cut(s) 21, 49, 168, 238, 420
Mox20I TGGCCA 1 cut(s) 251
MscI TGGCCA 1 cut(s) 251
MseI TTAA 3 cut(s) 116, 132, 312
Msp20I TGGCCA 1 cut(s) 251
MspR9I CCNGG 2 cut(s) 35, 122
MvaI CCWGG 2 cut(s) 35, 122
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 30, 340
NlaIII CATG 4 cut(s) 67, 81, 157, 400
NlaIV GGNNCC 1 cut(s) 32
NsbI TGCGCA 1 cut(s) 462
NspI RCATGY 2 cut(s) 67, 157
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 33, 120
PspGI CCWGG 2 cut(s) 33, 120
PspN4I GGNNCC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 3 cut(s) 68, 128, 152
RsaNI GTAC 3 cut(s) 67, 127, 151
SalI GTCGAC 1 cut(s) 44
SaqAI TTAA 3 cut(s) 116, 132, 312
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 2 cut(s) 30, 340
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 2 cut(s) 35, 122
SduI GDGCHC 1 cut(s) 385
SetI ASST 9 cut(s) 12, 96, 116, 132, 148, 175, 249, 318, 378
SgrDI CGTCGACG 1 cut(s) 44
Sse9I AATT 2 cut(s) 232, 472
SsiI CCGC 1 cut(s) 25
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 2 cut(s) 33, 120
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 1 cut(s) 458
TaiI ACGT 3 cut(s) 12, 96, 132
TaqI TCGA 3 cut(s) 45, 206, 264
TasI AATT 2 cut(s) 232, 472
TatI WGTACW 1 cut(s) 150
Tru1I TTAA 3 cut(s) 116, 132, 312
Tru9I TTAA 3 cut(s) 116, 132, 312
TscAI CASTG 1 cut(s) 461
TseI GCWGC 1 cut(s) 373
TspRI CASTG 1 cut(s) 461
Van91I CCANNNNNTGG 1 cut(s) 367
XbaI TCTAGA 1 cut(s) 160
XceI RCATGY 2 cut(s) 67, 157
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.