Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002806

Physical Location & Seq

Genomic Coordinates Reverse (-)

28082159 .. 28082995

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G314600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCTGACGTGGCAGAAAGCGAGCGGAGGATCCTCGTGGCCGTCGATGAAGGAGAGGAGAGCATGCATGCTCTCTCTTGGTGCCTCAAGAACGTTGTTTCTCAGAATTCCAAAGATACCCTTATCCTACTCTACGCCAAGCCCCCGAGAGCTGTGTACACGGCTCTAGATGGCACAGGTAGGAGAGAGGATCCATCAGGGTATTTGTTTTCCTCGGATATTTTGGCGGCGATGGAGAAGTACGGCGCTGAGGTGGCGGCCTGCGTGATCGAGAAGGCCAAGAAGATGTGCAAAGACCTTCAGCAGGATGTTAAGGTGGAGACGCGAGTAGAGAACGGTGATCCGAGGGATGTGATTTGCCAGATGGCAGAGCAGCTTGGTGCTGACGTGTTGGTCATGGGAAGCCATGGCTATGGTCTCATCAAAAGGGCATTCCTCGGGAGTGTGAGCAACCACTGTGCACAGAATGTGAAGTGTCCTGTGTTGATTGTGAAGAAGCCAAAAACAAATGCTTTCAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

175

Amino Acids

19.03

Weight (kDa)

6.82

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62550
fragaria_vesca	FvH4_5g39370 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300
malus_domestica	MD03G1296200.v1.1 MD04G1194600.v1.1 MD11G1315600.v1.1 MD12G1206900.v1.1
prunus_persica	Prupe.6G314600_v2.0.a1 Prupe.6G314600_v2.0.a1 Prupe.8G271100_v2.0.a1
pyrus_communis	pycom04g17190 pycom12g19480
rosa_chinensis	RchiOBHm_Chr3g0456911 RchiOBHm_Chr7g0241661
rosa_laevigata	RLG00000000556 RLG00000025265 RLG00000025268
rosa_multiflora	Rmu_sc0000133.1_g000003 Rmu_sc0002268.1_g000009 Rmu_sc0019791.1_g000001 Rmu_sc0026340.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218840 Rroxscaffold_6G00422380
rosa_rugosa	Rorug03G0017000 Rorug03G0017000 Rorug07G0346000
rosa_samantha	Rh3AG077300 Rh3BG079100 Rh3CG079000 Rh3DG081000 Rh7AG500600 Rh7BG471700 Rh7CG517000 Rh7DG485500
rosa_wichuraiana	Rw3G006630 Rw7G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	81
AccBSI	CCGCTC	1 cut(s)	25
AccII	CGCG	1 cut(s)	325
AciI	CCGC	3 cut(s)	25, 227, 257
AclI	AACGTT	1 cut(s)	93
AclWI	GGATC	5 cut(s)	25, 38, 185, 198, 335
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	2 cut(s)	158, 242
AfiI	CCNNNNNNNGG	1 cut(s)	304
AflIII	ACRYGT	1 cut(s)	387
AjiI	CACGTC	2 cut(s)	10, 388
AluBI	AGCT	2 cut(s)	152, 376
AluI	AGCT	2 cut(s)	152, 376
Alw21I	GWGCWC	1 cut(s)	463
Alw26I	GTCTC	2 cut(s)	314, 422
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	5 cut(s)	25, 38, 185, 198, 335
Ama87I	CYCGRG	2 cut(s)	145, 437
AoxI	GGCC	3 cut(s)	39, 258, 276
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	1 cut(s)	373
ApoI	RAATTY	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	350
AvaI	CYCGRG	2 cut(s)	145, 437
BaeGI	GKGCMC	1 cut(s)	463
BamHI	GGATCC	2 cut(s)	30, 190
BanI	GGYRCC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	463
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	4 cut(s)	164, 202, 226, 358
BceAI	ACGGC	3 cut(s)	26, 177, 259
BcoDI	GTCTC	2 cut(s)	314, 422
BfaI	CTAG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	249
BisI	GCNGC	3 cut(s)	228, 258, 374
BlsI	GCNGC	3 cut(s)	229, 259, 375
BmeT110I	CYCGRG	2 cut(s)	145, 437
BmgBI	CACGTC	2 cut(s)	10, 388
BmiI	GGNNCC	3 cut(s)	32, 83, 192
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	4 cut(s)	213, 344, 406, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
BseDI	CCNNGG	4 cut(s)	213, 344, 406, 436
BseGI	GGATG	2 cut(s)	313, 355
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	116, 240
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	1 cut(s)	385
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	3 cut(s)	41, 260, 278
BshNI	GGYRCC	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	463
BsiHKCI	CYCGRG	2 cut(s)	145, 437
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	2 cut(s)	314, 422
BsmBI	CGTCTC	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	3 cut(s)	41, 260, 278
Bso31I	GGTCTC	1 cut(s)	422
BsoBI	CYCGRG	2 cut(s)	145, 437
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	4 cut(s)	30, 190, 267, 340
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	3 cut(s)	25, 227, 257
BspANI	GGCC	3 cut(s)	41, 260, 278
BspCNI	CTCAG	2 cut(s)	115, 241
BspFNI	CGCG	1 cut(s)	325
BspLI	GGNNCC	3 cut(s)	32, 83, 192
BspPI	GGATC	5 cut(s)	25, 38, 185, 198, 335
BspT107I	GGYRCC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	422
BsrBI	CCGCTC	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	156
BssECI	CCNNGG	4 cut(s)	213, 344, 406, 436
BssMI	GATC	4 cut(s)	30, 190, 267, 340
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	406
Bst2BI	CACGAG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	338, 458
BstAUI	TGTACA	1 cut(s)	156
BstC8I	GCNNGC	4 cut(s)	23, 65, 69, 262
BstDEI	CTNAG	2 cut(s)	102, 249
BstDSI	CCRYGG	1 cut(s)	406
BstENI	CCTNNNNNAGG	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	313, 355
BstFNI	CGCG	1 cut(s)	325
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	4 cut(s)	33, 193, 270, 343
BstMAI	GTCTC	2 cut(s)	314, 422
BstMBI	GATC	4 cut(s)	30, 190, 267, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 254
BstNSI	RCATGY	2 cut(s)	67, 71
BstSLI	GKGCMC	1 cut(s)	463
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	385
BstX2I	RGATCY	2 cut(s)	30, 190
BstXI	CCANNNNNNTGG	1 cut(s)	413
BstYI	RGATCY	2 cut(s)	30, 190
BsuRI	GGCC	3 cut(s)	41, 260, 278
BtgI	CCRYGG	1 cut(s)	406
BtgZI	GCGATG	1 cut(s)	245
BtrI	CACGTC	2 cut(s)	10, 388
BtsCI	GGATG	2 cut(s)	313, 355
BtsIMutI	CAGTG	1 cut(s)	454
Cac8I	GCNNGC	4 cut(s)	23, 65, 69, 262
CfoI	GCGC	1 cut(s)	248
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	157, 241
CviAII	CATG	4 cut(s)	64, 68, 397, 407
CviQI	GTAC	2 cut(s)	157, 241
DdeI	CTNAG	2 cut(s)	102, 249
DpnI	GATC	4 cut(s)	32, 192, 269, 342
DpnII	GATC	4 cut(s)	30, 190, 267, 340
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	406
Eco31I	GGTCTC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	2 cut(s)	145, 437
EcoNI	CCTNNNNNAGG	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	406
EcoT22I	ATGCAT	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	406
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	4 cut(s)	67, 71, 400, 410
FaiI	YATR	5 cut(s)	65, 69, 398, 408, 414
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	4 cut(s)	63, 67, 396, 406
Fnu4HI	GCNGC	3 cut(s)	228, 258, 374
FokI	GGATG	2 cut(s)	320, 362
Fsp4HI	GCNGC	3 cut(s)	228, 258, 374
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	3 cut(s)	228, 258, 374
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	3 cut(s)	41, 260, 278
HgaI	GACGC	1 cut(s)	331
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	4 cut(s)	67, 71, 400, 410
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	3 cut(s)	157, 159, 461
Hpy188I	TCNGA	3 cut(s)	105, 217, 345
Hpy188III	TCNNGA	4 cut(s)	88, 167, 271, 439
Hpy8I	GTNNAC	3 cut(s)	157, 159, 461
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	44, 268, 308
HpyCH4III	ACNGT	2 cut(s)	338, 458
HpyCH4IV	ACGT	3 cut(s)	9, 93, 387
HpyCH4V	TGCA	3 cut(s)	67, 291, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 254
HpyF3I	CTNAG	2 cut(s)	102, 249
HpySE526I	ACGT	3 cut(s)	9, 93, 387
Hsp92II	CATG	4 cut(s)	67, 71, 400, 410
HspAI	GCGC	1 cut(s)	246
Kzo9I	GATC	4 cut(s)	30, 190, 267, 340
LpnPI	CCDG	6 cut(s)	162, 183, 274, 290, 374, 492
Lsp1109I	GCAGC	1 cut(s)	385
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	3 cut(s)	9, 93, 387
MalI	GATC	4 cut(s)	32, 192, 269, 342
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	4 cut(s)	30, 190, 267, 340
MboII	GAAGA	2 cut(s)	295, 505
MflI	RGATCY	2 cut(s)	30, 190
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	1 cut(s)	106
MnlI	CCTC	9 cut(s)	21, 44, 49, 95, 181, 223, 244, 339, 446
Mph1103I	ATGCAT	1 cut(s)	69
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	411
Mva1269I	GAATGC	1 cut(s)	431
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	2 cut(s)	11, 254
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	4 cut(s)	30, 190, 267, 340
NlaIII	CATG	4 cut(s)	67, 71, 400, 410
NlaIV	GGNNCC	3 cut(s)	32, 83, 192
NsiI	ATGCAT	1 cut(s)	69
NspI	RCATGY	2 cut(s)	67, 71
PaeI	GCATGC	2 cut(s)	67, 71
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	1 cut(s)	431
PkrI	GCNGC	3 cut(s)	229, 259, 375
Psp1406I	AACGTT	1 cut(s)	93
PspN4I	GGNNCC	3 cut(s)	32, 83, 192
PsuI	RGATCY	2 cut(s)	30, 190
RsaI	GTAC	2 cut(s)	158, 242
RsaNI	GTAC	2 cut(s)	157, 241
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	3 cut(s)	228, 258, 374
Sau3AI	GATC	4 cut(s)	30, 190, 267, 340
SduI	GDGCHC	1 cut(s)	463
SetI	ASST	9 cut(s)	12, 96, 154, 181, 255, 300, 318, 378, 390
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SphI	GCATGC	2 cut(s)	67, 71
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	3 cut(s)	25, 227, 257
SspMI	CTAG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	2 cut(s)	338, 458
TaiI	ACGT	3 cut(s)	12, 96, 390
TaqI	TCGA	2 cut(s)	45, 270
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	2 cut(s)	230, 260
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	461
TseI	GCWGC	1 cut(s)	373
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	461
VneI	GTGCAC	1 cut(s)	459
XagI	CCTNNNNNAGG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	106
XbaI	TCTAGA	1 cut(s)	166
XceI	RCATGY	2 cut(s)	67, 71
XspI	CTAG	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.