Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002806

Physical Location & Seq

Genomic Coordinates Reverse (-)

22475057 .. 22476486

Gene Structure 1430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G271100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAGGACGAGGGCGAACATATGAAGAACAGAGAGAACAAAATTGTGGTGGCAGTAGATGAGAGTGAAGAGAGCATGCATGCACTGTCCTGGTGTCTGGGAAACCTCTCTTCTTCTAAAAACACCAGCAACACTCTTGTTCTTCTCTATGTGAAACCACCGCCAGTCCATTCCACTTTCGATGCTGCAGGATATATGTTTTCCAGCGATGTAGTTGCAACCATGGAAAAATACGGCACTGACATGGTCAATTCAGTGATGCAAAGAGCCGAAGCTGTCTACAGAAATTTCCACACCAATGCACATGTGCATATTGAGAGACTGGTAGGGAGGGGAGATCCAAAGGATGTGATATGTAATACGGTTGAGAAACTTAGAGCTGATACCTTGGTCATGGGAAGCCACGGTTATGGTTTCCTTAAGAGGACTCTTGTTGGAAGTGTAAGTGATTATTGTGCCAAACACGTAGAGTGTCCGGTGGTGATTGTGAAGCATCCTGCCAGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

170

Amino Acids

18.68

Weight (kDa)

6.12

Isoelectric Point (pI)

30.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62550
fragaria_vesca	FvH4_5g39370 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300
malus_domestica	MD03G1296200.v1.1 MD04G1194600.v1.1 MD11G1315600.v1.1 MD12G1206900.v1.1
prunus_persica	Prupe.6G314600_v2.0.a1 Prupe.6G314600_v2.0.a1 Prupe.8G271100_v2.0.a1
pyrus_communis	pycom04g17190 pycom12g19480
rosa_chinensis	RchiOBHm_Chr3g0456911 RchiOBHm_Chr7g0241661
rosa_laevigata	RLG00000000556 RLG00000025265 RLG00000025268
rosa_multiflora	Rmu_sc0000133.1_g000003 Rmu_sc0002268.1_g000009 Rmu_sc0019791.1_g000001 Rmu_sc0026340.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218840 Rroxscaffold_6G00422380
rosa_rugosa	Rorug03G0017000 Rorug03G0017000 Rorug07G0346000
rosa_samantha	Rh3AG077300 Rh3BG079100 Rh3CG079000 Rh3DG081000 Rh7AG500600 Rh7BG471700 Rh7CG517000 Rh7DG485500
rosa_wichuraiana	Rw3G006630 Rw7G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	1 cut(s)	286
AflII	CTTAAG	1 cut(s)	419
AflIII	ACRYGT	2 cut(s)	304, 463
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	2 cut(s)	275, 380
AluI	AGCT	2 cut(s)	275, 380
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	1 cut(s)	332
AlwNI	CAGNNNCTG	1 cut(s)	507
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	493
BaeI	ACNNNNGTAYC	2 cut(s)	375, 408
BbvI	GCAGC	1 cut(s)	172
BceAI	ACGGC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	313
BfmI	CTRYAG	2 cut(s)	186, 280
BfrI	CTTAAG	1 cut(s)	419
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	3 cut(s)	172, 249, 502
BsaAI	YACGTR	1 cut(s)	466
BsaJI	CCNNGG	3 cut(s)	222, 387, 403
BsaWI	WCCGGW	1 cut(s)	475
Bse1I	ACTGG	3 cut(s)	164, 327, 501
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	3 cut(s)	222, 387, 403
BseGI	GGATG	2 cut(s)	352, 493
BseNI	ACTGG	3 cut(s)	164, 327, 501
BseXI	GCAGC	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	476
BsmAI	GTCTC	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	337
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	1 cut(s)	161
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	332
BspTI	CTTAAG	1 cut(s)	419
BsrI	ACTGG	3 cut(s)	164, 327, 501
BssECI	CCNNGG	3 cut(s)	222, 387, 403
BssMI	GATC	1 cut(s)	337
BssT1I	CCWWGG	2 cut(s)	222, 387
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	3 cut(s)	87, 364, 407
Bst6I	CTCTTC	2 cut(s)	63, 115
BstAFI	CTTAAG	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	466
BstC8I	GCNNGC	2 cut(s)	77, 81
BstDEI	CTNAG	1 cut(s)	374
BstDSI	CCRYGG	2 cut(s)	222, 403
BstF5I	GGATG	2 cut(s)	352, 493
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	337
BstNI	CCWGG	1 cut(s)	91
BstNSI	RCATGY	3 cut(s)	79, 83, 308
BstSCI	CCNGG	1 cut(s)	89
BstSFI	CTRYAG	2 cut(s)	186, 280
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	337
BtgI	CCRYGG	2 cut(s)	222, 403
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	352, 493
BtsIMutI	CAGTG	4 cut(s)	83, 237, 261, 508
Cac8I	GCNNGC	2 cut(s)	77, 81
CaiI	CAGNNNCTG	1 cut(s)	507
CviAII	CATG	6 cut(s)	76, 80, 223, 244, 305, 394
CviJI	RGCY	4 cut(s)	269, 275, 380, 402
CviKI_1	RGCY	4 cut(s)	269, 275, 380, 402
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	2 cut(s)	63, 115
EarI	CTCTTC	2 cut(s)	63, 115
Eco130I	CCWWGG	2 cut(s)	222, 387
EcoRII	CCWGG	1 cut(s)	89
EcoT14I	CCWWGG	2 cut(s)	222, 387
EcoT22I	ATGCAT	1 cut(s)	81
ErhI	CCWWGG	2 cut(s)	222, 387
FaeI	CATG	6 cut(s)	79, 83, 226, 247, 308, 397
FatI	CATG	6 cut(s)	75, 79, 222, 243, 304, 393
FauNDI	CATATG	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	2 cut(s)	359, 480
Fsp4HI	GCNGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	186
HapII	CCGG	1 cut(s)	476
Hin1II	CATG	6 cut(s)	79, 83, 226, 247, 308, 397
HinfI	GANTC	1 cut(s)	427
HpaII	CCGG	1 cut(s)	476
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	280
HpyCH4III	ACNGT	3 cut(s)	87, 364, 407
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	7 cut(s)	79, 83, 188, 218, 262, 302, 310
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	1 cut(s)	465
Hsp92II	CATG	6 cut(s)	79, 83, 226, 247, 308, 397
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	9 cut(s)	76, 83, 103, 139, 174, 177, 217, 308, 489
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	3 cut(s)	172, 249, 502
MaeII	ACGT	1 cut(s)	465
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	5 cut(s)	37, 80, 102, 105, 134
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	3 cut(s)	42, 250, 286
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	4 cut(s)	4, 116, 324, 417
Mph1103I	ATGCAT	1 cut(s)	81
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	3 cut(s)	242, 297, 408
MspCI	CTTAAG	1 cut(s)	419
MspI	CCGG	1 cut(s)	476
MspR9I	CCNGG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	21
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	6 cut(s)	79, 83, 226, 247, 308, 397
NsiI	ATGCAT	1 cut(s)	81
NspI	RCATGY	3 cut(s)	79, 83, 308
PaeI	GCATGC	2 cut(s)	79, 83
PciI	ACATGT	1 cut(s)	304
PflFI	GACNNNGTC	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
Ppu21I	YACGTR	1 cut(s)	466
PscI	ACATGT	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	507
PsuI	RGATCY	1 cut(s)	337
PsyI	GACNNNGTC	1 cut(s)	245
RseI	CAYNNNNRTG	3 cut(s)	242, 297, 408
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	1 cut(s)	91
SetI	ASST	5 cut(s)	108, 277, 382, 389, 468
SfaNI	GCATC	3 cut(s)	172, 249, 502
SfcI	CTRYAG	2 cut(s)	186, 280
SmiMI	CAYNNNNRTG	3 cut(s)	242, 297, 408
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SphI	GCATGC	2 cut(s)	79, 83
Sse9I	AATT	3 cut(s)	42, 250, 286
SsiI	CCGC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	2 cut(s)	222, 387
TaaI	ACNGT	3 cut(s)	87, 364, 407
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	42, 250, 286
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	4 cut(s)	90, 244, 261, 508
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	4 cut(s)	90, 244, 261, 508
Tth111I	GACNNNGTC	1 cut(s)	245
Vha464I	CTTAAG	1 cut(s)	419
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	3 cut(s)	79, 83, 308
XmiI	GTMKAC	1 cut(s)	279
Zsp2I	ATGCAT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.