Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002806

Physical Location & Seq

Genomic Coordinates Forward (+)

37195132 .. 37196172

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1296200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGAGGCCGAAAAAATAAAGAGCAGAGAGCACAAAATTGTGGTGGCAGTAGACGAGAGCGAAGAGAGCATGCATGCTCTCTCCTGGTGTCTGGGAAACCTCTCTTCTCAAAACGCAAACAACACTCTCGTTCTTCTCTATGTCAAACCGCAGCCTGTCCATTCCACTTTCGACGCTGCAGCATATATGTTTTCGAGCGATGTGGTTGGAAGCATAGAAAAATACGGGACTGAGATGGTAAATTCAGTGATGCAAAGAGCCGAAGCTGTTTACAGAAATTTCCAGACCAATGCCCATATTGTGAGAGTAGTAGGGAAAGGAGATCCAAAGAATGTGATATGTAATACGGTTGAGAAATTCAAAGCTGACACTTTGGTCATGGGAAGCCATGGTTATGGTTTCTTTAAGAGGACTATTCTTGGAAGTGTGAGTGATTATTGTGCGAAACATGTAGAATGTCCGGTGTGTTGGTATATGGTCCAGCCCATGATCAATGTTCTAGATTATTCTAGTAAGCAAAAGATGAGGCTGGAGCTTGCTAGACAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

184

Amino Acids

20.64

Weight (kDa)

7.66

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	11 - 155	5.6e-26	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62550
fragaria_vesca	FvH4_5g39370 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300
malus_domestica	MD03G1296200.v1.1 MD04G1194600.v1.1 MD11G1315600.v1.1 MD12G1206900.v1.1
prunus_persica	Prupe.6G314600_v2.0.a1 Prupe.6G314600_v2.0.a1 Prupe.8G271100_v2.0.a1
pyrus_communis	pycom04g17190 pycom12g19480
rosa_chinensis	RchiOBHm_Chr3g0456911 RchiOBHm_Chr7g0241661
rosa_laevigata	RLG00000000556 RLG00000025265 RLG00000025268
rosa_multiflora	Rmu_sc0000133.1_g000003 Rmu_sc0002268.1_g000009 Rmu_sc0019791.1_g000001 Rmu_sc0026340.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218840 Rroxscaffold_6G00422380
rosa_rugosa	Rorug03G0017000 Rorug03G0017000 Rorug07G0346000
rosa_samantha	Rh3AG077300 Rh3BG079100 Rh3CG079000 Rh3DG081000 Rh7AG500600 Rh7BG471700 Rh7CG517000 Rh7DG485500
rosa_wichuraiana	Rw3G006630 Rw7G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	3 cut(s)	241, 277, 356
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	3 cut(s)	266, 365, 535
AluI	AGCT	3 cut(s)	266, 365, 535
Alw21I	GWGCWC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	317
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	3 cut(s)	151, 176, 179
ApoI	RAATTY	3 cut(s)	241, 277, 356
AspS9I	GGNCC	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	3 cut(s)	163, 163, 191
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	85
BclI	TGATCA	1 cut(s)	489
BfaI	CTAG	4 cut(s)	500, 510, 540, 550
BfmI	CTRYAG	1 cut(s)	177
BisI	GCNGC	3 cut(s)	152, 177, 180
BlsI	GCNGC	3 cut(s)	153, 178, 181
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	478
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	551
BsaJI	CCNNGG	1 cut(s)	388
BsaWI	WCCGGW	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	388
BseMII	CTCAG	1 cut(s)	222
BseXI	GCAGC	3 cut(s)	163, 163, 191
BshFI	GGCC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	322, 489
Bsp19I	CCATGG	1 cut(s)	388
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	2 cut(s)	322, 489
BssT1I	CCWWGG	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	57, 109
BstC8I	GCNNGC	3 cut(s)	71, 75, 537
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	388
BstKTI	GATC	2 cut(s)	325, 492
BstMBI	GATC	2 cut(s)	322, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNI	CCWGG	1 cut(s)	85
BstNSI	RCATGY	3 cut(s)	73, 77, 452
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	163, 163, 191
BstX2I	RGATCY	1 cut(s)	322
BstXI	CCANNNNNNTGG	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	388
BtgZI	GCGATG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	3 cut(s)	71, 75, 537
Cfr13I	GGNCC	1 cut(s)	478
CseI	GACGC	1 cut(s)	182
CviAII	CATG	6 cut(s)	70, 74, 379, 389, 449, 487
CviJI	RGCY	9 cut(s)	8, 154, 260, 266, 365, 387, 484, 529, 535
CviKI_1	RGCY	9 cut(s)	8, 154, 260, 266, 365, 387, 484, 529, 535
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	324, 491
DpnII	GATC	2 cut(s)	322, 489
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
Eam1104I	CTCTTC	2 cut(s)	57, 109
EarI	CTCTTC	2 cut(s)	57, 109
Eco130I	CCWWGG	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	388
EcoT22I	ATGCAT	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	6 cut(s)	73, 77, 382, 392, 452, 490
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	6 cut(s)	69, 73, 378, 388, 448, 486
FbaI	TGATCA	1 cut(s)	489
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	3 cut(s)	152, 177, 180
Fsp4HI	GCNGC	3 cut(s)	152, 177, 180
FspBI	CTAG	4 cut(s)	500, 510, 540, 550
GluI	GCNGC	3 cut(s)	152, 177, 180
GsuI	CTGGAG	1 cut(s)	551
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	461
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	6 cut(s)	73, 77, 382, 392, 452, 490
HpaII	CCGG	1 cut(s)	461
Hpy166II	GTNNAC	2 cut(s)	52, 271
Hpy188III	TCNNGA	2 cut(s)	283, 500
Hpy8I	GTNNAC	2 cut(s)	52, 271
Hpy99I	CGWCG	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	3 cut(s)	73, 179, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	6 cut(s)	73, 77, 382, 392, 452, 490
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	2 cut(s)	322, 489
LmnI	GCTCC	1 cut(s)	532
LpnPI	CCDG	8 cut(s)	70, 77, 97, 168, 296, 474, 494, 515
Lsp1109I	GCAGC	3 cut(s)	163, 163, 191
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	4 cut(s)	500, 510, 540, 550
MalI	GATC	2 cut(s)	324, 491
MboI	GATC	2 cut(s)	322, 489
MboII	GAAGA	3 cut(s)	74, 96, 125
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	5 cut(s)	36, 241, 277, 356, 545
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	3 cut(s)	110, 402, 519
Mph1103I	ATGCAT	1 cut(s)	75
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	393
MspI	CCGG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	66
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	2 cut(s)	322, 489
NlaIII	CATG	6 cut(s)	73, 77, 382, 392, 452, 490
NsiI	ATGCAT	1 cut(s)	75
NspI	RCATGY	3 cut(s)	73, 77, 452
PaeI	GCATGC	2 cut(s)	73, 77
PciI	ACATGT	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	153, 178, 181
PscI	ACATGT	1 cut(s)	448
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	478
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	3 cut(s)	152, 177, 180
Sau3AI	GATC	2 cut(s)	322, 489
Sau96I	GGNCC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	4 cut(s)	102, 268, 367, 537
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	393
SphI	GCATGC	2 cut(s)	73, 77
Sse9I	AATT	5 cut(s)	36, 241, 277, 356, 545
SsiI	CCGC	1 cut(s)	149
SspMI	CTAG	4 cut(s)	500, 510, 540, 550
StyD4I	CCNGG	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	349
TaqI	TCGA	2 cut(s)	171, 194
TasI	AATT	5 cut(s)	36, 241, 277, 356, 545
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	3 cut(s)	151, 176, 179
TspRI	CASTG	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	3 cut(s)	241, 277, 356
XbaI	TCTAGA	1 cut(s)	499
XceI	RCATGY	3 cut(s)	73, 77, 452
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	4 cut(s)	500, 510, 540, 550
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.