Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002806

Physical Location & Seq

Genomic Coordinates Forward (+)

1972272 .. 1973406

Gene Structure 1135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000556

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCTAGAAGAAAGATTGATGTGTTCGTTGCCGGATACATGTTTTCGAAGAACGATGTAGTCGCCGCGATGGAGAAGTACGGGAATGACATGATAAATTCAGTGATGCAACGAGCTGAAGCTGTCTACAAAAACTTCAATGTCAACGCCAATGTAAATATAGAGAGAGTGGTTGGCAGCGGAGATCCGAAAGATGTGATTTGCAATGCAGTCGAGAAGCTTCGAGCTGATACCTTGGTCATGGGATCCCATGGCTATGGTTTCTTCAAGAGGGCTCTTCTTGGAAGCGTGAGTGATTATTGTGCGAAACACGTCGAGTGTCCAGTGGTGATTGTCAAGCATCCTGACCACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

119

Amino Acids

13.11

Weight (kDa)

8.79

Isoelectric Point (pI)

26.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	48 - 113	8.7e-22	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62550
fragaria_vesca	FvH4_5g39370 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300
malus_domestica	MD03G1296200.v1.1 MD04G1194600.v1.1 MD11G1315600.v1.1 MD12G1206900.v1.1
prunus_persica	Prupe.6G314600_v2.0.a1 Prupe.6G314600_v2.0.a1 Prupe.8G271100_v2.0.a1
pyrus_communis	pycom04g17190 pycom12g19480
rosa_chinensis	RchiOBHm_Chr3g0456911 RchiOBHm_Chr7g0241661
rosa_laevigata	RLG00000000556 RLG00000025265 RLG00000025268
rosa_multiflora	Rmu_sc0000133.1_g000003 Rmu_sc0002268.1_g000009 Rmu_sc0019791.1_g000001 Rmu_sc0026340.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218840 Rroxscaffold_6G00422380
rosa_rugosa	Rorug03G0017000 Rorug03G0017000 Rorug07G0346000
rosa_samantha	Rh3AG077300 Rh3BG079100 Rh3CG079000 Rh3DG081000 Rh7AG500600 Rh7BG471700 Rh7CG517000 Rh7DG485500
rosa_wichuraiana	Rw3G006630 Rw7G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	68
AciI	CCGC	2 cut(s)	66, 180
AclWI	GGATC	3 cut(s)	179, 240, 253
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	80
AflIII	ACRYGT	2 cut(s)	39, 310
AgsI	TTSAA	2 cut(s)	139, 268
AjiI	CACGTC	1 cut(s)	313
AluBI	AGCT	4 cut(s)	116, 122, 220, 227
AluI	AGCT	4 cut(s)	116, 122, 220, 227
AlwI	GGATC	3 cut(s)	179, 240, 253
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	340
AsuII	TTCGAA	1 cut(s)	47
BaeI	ACNNNNGTAYC	2 cut(s)	222, 255
BamHI	GGATCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	1 cut(s)	64
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciVI	GTATCC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	6
BfuI	GTATCC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	66, 178
BlsI	GCNGC	2 cut(s)	67, 179
BmgBI	CACGTC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	247
BmsI	GCATC	2 cut(s)	96, 349
Bpu14I	TTCGAA	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	234, 250
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	2 cut(s)	234, 250
BseGI	GGATG	1 cut(s)	340
BseMI	GCAATG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	33
Bsp119I	TTCGAA	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	184, 245
Bsp19I	CCATGG	1 cut(s)	250
BspACI	CCGC	2 cut(s)	66, 180
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	3 cut(s)	179, 240, 253
BspQI	GCTCTTC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	234, 250
BssMI	GATC	2 cut(s)	184, 245
BssT1I	CCWWGG	2 cut(s)	234, 250
Bst6I	CTCTTC	1 cut(s)	282
BstBI	TTCGAA	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	340
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	2 cut(s)	187, 248
BstMBI	GATC	2 cut(s)	184, 245
BstNSI	RCATGY	1 cut(s)	43
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	2 cut(s)	184, 245
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	2 cut(s)	184, 245
BsuI	GTATCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	250
BtgZI	GCGATG	1 cut(s)	83
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	108, 330
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	4 cut(s)	40, 91, 241, 251
CviJI	RGCY	7 cut(s)	5, 116, 122, 220, 227, 255, 275
CviKI_1	RGCY	7 cut(s)	5, 116, 122, 220, 227, 255, 275
CviQI	GTAC	1 cut(s)	79
DpnI	GATC	2 cut(s)	186, 247
DpnII	GATC	2 cut(s)	184, 245
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	234, 250
Eco24I	GRGCYC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	138
EcoT14I	CCWWGG	2 cut(s)	234, 250
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	2 cut(s)	234, 250
FaeI	CATG	4 cut(s)	43, 94, 244, 254
FaiI	YATR	6 cut(s)	41, 92, 161, 242, 252, 258
FatI	CATG	4 cut(s)	39, 90, 240, 250
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	66, 178
FokI	GGATG	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	2 cut(s)	66, 178
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	2 cut(s)	66, 178
HapII	CCGG	1 cut(s)	33
Hin1II	CATG	4 cut(s)	43, 94, 244, 254
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	218
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	2 cut(s)	127, 145
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	3 cut(s)	214, 268, 344
Hpy8I	GTNNAC	2 cut(s)	127, 145
Hpy99I	CGWCG	1 cut(s)	317
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	3 cut(s)	109, 204, 209
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	43, 94, 244, 254
Kzo9I	GATC	2 cut(s)	184, 245
LguI	GCTCTTC	1 cut(s)	282
LpnPI	CCDG	2 cut(s)	46, 336
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	2 cut(s)	96, 349
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	312
MalI	GATC	2 cut(s)	186, 247
MboI	GATC	2 cut(s)	184, 245
MboII	GAAGA	4 cut(s)	21, 61, 256, 269
MflI	RGATCY	2 cut(s)	184, 245
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	1 cut(s)	97
MnlI	CCTC	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	1 cut(s)	33
MvnI	CGCG	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	2 cut(s)	184, 245
NlaIII	CATG	4 cut(s)	43, 94, 244, 254
NlaIV	GGNNCC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	43
NspV	TTCGAA	1 cut(s)	47
PciI	ACATGT	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	282
PkrI	GCNGC	2 cut(s)	67, 179
PscI	ACATGT	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	247
PsuI	RGATCY	2 cut(s)	184, 245
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	282
SatI	GCNGC	2 cut(s)	66, 178
Sau3AI	GATC	2 cut(s)	184, 245
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	6 cut(s)	118, 124, 222, 229, 236, 315
SfaNI	GCATC	2 cut(s)	96, 349
SfuI	TTCGAA	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	2 cut(s)	66, 180
SspMI	CTAG	1 cut(s)	6
StyI	CCWWGG	2 cut(s)	234, 250
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	4 cut(s)	47, 213, 223, 315
TasI	AATT	1 cut(s)	97
TauI	GCSGC	1 cut(s)	68
TscAI	CASTG	2 cut(s)	108, 330
TseI	GCWGC	1 cut(s)	177
TspRI	CASTG	2 cut(s)	108, 330
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.