Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002806

Physical Location & Seq

Genomic Coordinates Reverse (-)

28714600 .. 28716562

Gene Structure 1963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1206900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGACTGACGTGGCAGAAGGCGAACGGAGGATCCTCGTGGCCGTCGACGAAGGCGAGGAGAGCATGTATGCGCTGTCGTGGTGCCTGAAGAACATCGTTGCCCAAAATTCCAAAGATACCCTTATCCTACTCTACGCCAAGCCCCCGCGAGCAGTGTTCACCGCTCTGGACGGCACAGGGTATTTGTTTTCGTCTGAGACTTGGGCGGCAATGGAGAAGTACGCTGCTGATGTGGCGGACTGCGTGATGGAGAAGGCCAAGAAGACGTGCAGGGACCTCCGTCAGGATGTTAAGGTGGAGACGAAAGTGGAGAATGGAGATCCGAGGGATGTCATTTGCCAGATGGCAGAGAAGCTTCGTGCTGACGTGTTGGTCGTGGGAAGCCACGGCTACGGCGGCATCAAAAGGGCTTTCCTTGGGAGCGTGAGCAATCACTGTGCACAGAATGTCAATTGTCCCGTCTTGATTGTCAAGAAGCCAAAAACAAATGCCGGGAGCAAAAGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

170

Amino Acids

18.5

Weight (kDa)

7.56

Isoelectric Point (pI)

24.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	9 - 158	3.1e-34	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62550
fragaria_vesca	FvH4_5g39370 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300
malus_domestica	MD03G1296200.v1.1 MD04G1194600.v1.1 MD11G1315600.v1.1 MD12G1206900.v1.1
prunus_persica	Prupe.6G314600_v2.0.a1 Prupe.6G314600_v2.0.a1 Prupe.8G271100_v2.0.a1
pyrus_communis	pycom04g17190 pycom12g19480
rosa_chinensis	RchiOBHm_Chr3g0456911 RchiOBHm_Chr7g0241661
rosa_laevigata	RLG00000000556 RLG00000025265 RLG00000025268
rosa_multiflora	Rmu_sc0000133.1_g000003 Rmu_sc0002268.1_g000009 Rmu_sc0019791.1_g000001 Rmu_sc0026340.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218840 Rroxscaffold_6G00422380
rosa_rugosa	Rorug03G0017000 Rorug03G0017000 Rorug07G0346000
rosa_samantha	Rh3AG077300 Rh3BG079100 Rh3CG079000 Rh3DG081000 Rh7AG500600 Rh7BG471700 Rh7CG517000 Rh7DG485500
rosa_wichuraiana	Rw3G006630 Rw7G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	81
AccBSI	CCGCTC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	45
AccII	CGCG	1 cut(s)	148
AciI	CCGC	5 cut(s)	146, 162, 206, 236, 396
AclWI	GGATC	3 cut(s)	25, 38, 314
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	366
AjiI	CACGTC	3 cut(s)	10, 267, 367
AloI	GAACNNNNNNTCC	2 cut(s)	15, 47
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	2 cut(s)	191, 293
Alw44I	GTGCAC	1 cut(s)	438
AlwI	GGATC	3 cut(s)	25, 38, 314
AoxI	GGCC	2 cut(s)	39, 255
ApaLI	GTGCAC	1 cut(s)	438
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	274
AsuC2I	CCSGG	1 cut(s)	493
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	442
BamHI	GGATCC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	241, 337
BceAI	ACGGC	4 cut(s)	26, 187, 403, 409
BcnI	CCSGG	1 cut(s)	493
BcoDI	GTCTC	2 cut(s)	191, 293
BisI	GCNGC	3 cut(s)	207, 225, 397
BlsI	GCNGC	3 cut(s)	208, 226, 398
Bme1390I	CCNGG	1 cut(s)	493
Bme18I	GGWCC	1 cut(s)	274
BmgBI	CACGTC	3 cut(s)	10, 267, 367
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	3 cut(s)	32, 83, 275
BmrFI	CCNGG	1 cut(s)	493
BmsI	GCATC	1 cut(s)	408
BoxI	GACNNNNGTC	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	493
BsaJI	CCNNGG	3 cut(s)	323, 385, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	216
BseDI	CCNNGG	3 cut(s)	323, 385, 415
BseGI	GGATG	2 cut(s)	292, 334
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	289
Bsh1236I	CGCG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	41, 257
BshNI	GGYRCC	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	2 cut(s)	287, 441
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	2 cut(s)	191, 293
BsmBI	CGTCTC	1 cut(s)	293
BsmFI	GGGAC	2 cut(s)	287, 441
BsnI	GGCC	2 cut(s)	41, 257
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	2 cut(s)	30, 319
BspACI	CCGC	5 cut(s)	146, 162, 206, 236, 396
BspANI	GGCC	2 cut(s)	41, 257
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	32, 83, 275
BspPI	GGATC	3 cut(s)	25, 38, 314
BspT107I	GGYRCC	1 cut(s)	81
BsrBI	CCGCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	216
BssECI	CCNNGG	3 cut(s)	323, 385, 415
BssMI	GATC	2 cut(s)	30, 319
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	415
Bst2BI	CACGAG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	385
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	2 cut(s)	292, 334
BstFNI	CGCG	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	2 cut(s)	33, 322
BstMAI	GTCTC	2 cut(s)	191, 293
BstMBI	GATC	2 cut(s)	30, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 233, 396
BstNSI	RCATGY	1 cut(s)	67
BstPAI	GACNNNNGTC	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	491
BstSLI	GKGCMC	1 cut(s)	442
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	2 cut(s)	30, 319
BstYI	RGATCY	2 cut(s)	30, 319
BsuRI	GGCC	2 cut(s)	41, 257
BtgI	CCRYGG	1 cut(s)	385
BtrI	CACGTC	3 cut(s)	10, 267, 367
BtsCI	GGATG	2 cut(s)	292, 334
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	159, 433
Cac8I	GCNNGC	1 cut(s)	150
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	9 cut(s)	41, 142, 257, 355, 384, 390, 410, 478, 504
CviKI_1	RGCY	9 cut(s)	41, 142, 257, 355, 384, 390, 410, 478, 504
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	32, 321
DpnII	GATC	2 cut(s)	30, 319
DrdI	GACNNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	371
EaeI	YGGCCR	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	107
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	1 cut(s)	67
FaiI	YATR	2 cut(s)	65, 69
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FaqI	GGGAC	2 cut(s)	287, 441
FatI	CATG	1 cut(s)	63
FauI	CCCGC	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	3 cut(s)	207, 225, 397
FokI	GGATG	2 cut(s)	299, 341
Fsp4HI	GCNGC	3 cut(s)	207, 225, 397
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	3 cut(s)	207, 225, 397
HaeIII	GGCC	2 cut(s)	41, 257
HapII	CCGG	1 cut(s)	492
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	353
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	3 cut(s)	46, 159, 440
Hpy188I	TCNGA	2 cut(s)	196, 324
Hpy188III	TCNNGA	4 cut(s)	167, 284, 463, 472
Hpy8I	GTNNAC	3 cut(s)	46, 159, 440
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyAV	CCTTC	3 cut(s)	11, 44, 247
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	3 cut(s)	9, 266, 366
HpyCH4V	TGCA	2 cut(s)	270, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 233, 396
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	3 cut(s)	9, 266, 366
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	30, 319
LmnI	GCTCC	2 cut(s)	420, 495
LpnPI	CCDG	7 cut(s)	98, 152, 162, 256, 269, 353, 505
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	408
MaeII	ACGT	3 cut(s)	9, 266, 366
MalI	GATC	2 cut(s)	32, 321
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	2 cut(s)	30, 319
MboII	GAAGA	2 cut(s)	100, 274
MfeI	CAATTG	1 cut(s)	451
MflI	RGATCY	2 cut(s)	30, 319
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	2 cut(s)	106, 451
MnlI	CCTC	5 cut(s)	21, 44, 49, 287, 318
MseI	TTAA	1 cut(s)	291
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	493
MunI	CAATTG	1 cut(s)	451
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	3 cut(s)	60, 233, 396
NciI	CCSGG	1 cut(s)	493
NdeII	GATC	2 cut(s)	30, 319
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	3 cut(s)	32, 83, 275
NspI	RCATGY	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 51, 372
PkrI	GCNGC	3 cut(s)	208, 226, 398
PpuMI	RGGWCCY	1 cut(s)	274
PshAI	GACNNNNGTC	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	32, 83, 275
PspPI	GGNCC	1 cut(s)	274
PspPPI	RGGWCCY	1 cut(s)	274
PsuI	RGATCY	2 cut(s)	30, 319
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	3 cut(s)	207, 225, 397
Sau3AI	GATC	2 cut(s)	30, 319
Sau96I	GGNCC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	493
SduI	GDGCHC	1 cut(s)	442
SetI	ASST	6 cut(s)	12, 269, 279, 297, 357, 369
SfaNI	GCATC	1 cut(s)	408
SgrDI	CGTCGACG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	274
Sse9I	AATT	2 cut(s)	106, 451
SsiI	CCGC	5 cut(s)	146, 162, 206, 236, 396
StyD4I	CCNGG	1 cut(s)	491
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	3 cut(s)	12, 269, 369
TaqI	TCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	106, 451
TauI	GCSGC	2 cut(s)	209, 399
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	2 cut(s)	159, 440
TseI	GCWGC	1 cut(s)	224
TspGWI	ACGGA	2 cut(s)	40, 269
TspRI	CASTG	2 cut(s)	159, 440
VneI	GTGCAC	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	274
XagI	CCTNNNNNAGG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.