Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019791.1

Orthogroup ID

OG0002806

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 951

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019791.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 434 bp

atggctgacgtggcggagaaagagcggaagatcctggtggccgtcgacgagggcgaggagagcatgtacgctctctcctggtgcctcaagaacgtggtttctcaaaattccaaagatacccttgtcctggtctacgttaagcccccgaaagctgtgtacatgcccctagatggcacaggtacgagagagggtccgtcagggtatatgttttcgactgatatttttgcggcgatggagaagtacagcggccaggtggccagctccgtcgtcgagaaggccaagaagatgtgcagggatgttcttcctgagctggatgttaaggtggagacgagagtagagaatggtgatccgagggatgtgatttgccaactggtggagcagatcgctgctgatgttcttgtcatgggtagtcatggctatggtctcatcaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

144

Amino Acids

15.82

Weight (kDa)

4.94

Isoelectric Point (pI)

26.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62550
fragaria_vesca	FvH4_5g39370 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300
malus_domestica	MD03G1296200.v1.1 MD04G1194600.v1.1 MD11G1315600.v1.1 MD12G1206900.v1.1
prunus_persica	Prupe.6G314600_v2.0.a1 Prupe.6G314600_v2.0.a1 Prupe.8G271100_v2.0.a1
pyrus_communis	pycom04g17190 pycom12g19480
rosa_chinensis	RchiOBHm_Chr3g0456911 RchiOBHm_Chr7g0241661
rosa_laevigata	RLG00000000556 RLG00000025265 RLG00000025268
rosa_multiflora	Rmu_sc0000133.1_g000003 Rmu_sc0002268.1_g000009 Rmu_sc0019791.1_g000001 Rmu_sc0026340.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218840 Rroxscaffold_6G00422380
rosa_rugosa	Rorug03G0017000 Rorug03G0017000 Rorug07G0346000
rosa_samantha	Rh3AG077300 Rh3BG079100 Rh3CG079000 Rh3DG081000 Rh7AG500600 Rh7BG471700 Rh7CG517000 Rh7DG485500
rosa_wichuraiana	Rw3G006630 Rw7G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	81
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccBSI	CCGCTC	1 cut(s)	25
AccI	GTMKAC	2 cut(s)	45, 132
AciI	CCGC	4 cut(s)	14, 25, 227, 246
AclWI	GGATC	2 cut(s)	25, 341
AcoI	YGGCCR	3 cut(s)	39, 247, 255
AcsI	RAATTY	1 cut(s)	106
AfaI	GTAC	4 cut(s)	68, 158, 181, 242
AfiI	CCNNNNNNNGG	3 cut(s)	127, 170, 373
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	4 cut(s)	33, 77, 126, 249
AluBI	AGCT	3 cut(s)	152, 261, 310
AluI	AGCT	3 cut(s)	152, 261, 310
Alw26I	GTCTC	2 cut(s)	320, 428
AlwI	GGATC	2 cut(s)	25, 341
AoxI	GGCC	4 cut(s)	39, 247, 255, 276
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	191
BaeI	ACNNNNGTAYC	2 cut(s)	108, 141
BalI	TGGCCA	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	2 cut(s)	164, 226
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	4 cut(s)	35, 79, 128, 251
BcoDI	GTCTC	2 cut(s)	320, 428
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	3 cut(s)	228, 247, 387
BlsI	GCNGC	3 cut(s)	229, 248, 388
Bme1390I	CCNGG	4 cut(s)	35, 79, 128, 251
Bme18I	GGWCC	1 cut(s)	191
BmgBI	CACGTC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	83, 192
BmrFI	CCNGG	4 cut(s)	35, 79, 128, 251
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	350
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 59, 80, 89
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 170, 373
Bse1I	ACTGG	1 cut(s)	375
BseBI	CCWGG	4 cut(s)	35, 79, 128, 251
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	3 cut(s)	301, 319, 361
BseLI	CCNNNNNNNGG	3 cut(s)	127, 170, 373
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	373
BsgI	GTGCAG	1 cut(s)	310
BshFI	GGCC	4 cut(s)	41, 249, 257, 278
BshNI	GGYRCC	1 cut(s)	81
BslI	CCNNNNNNNGG	3 cut(s)	127, 170, 373
BsmAI	GTCTC	2 cut(s)	320, 428
BsmBI	CGTCTC	1 cut(s)	320
BsnI	GGCC	4 cut(s)	41, 249, 257, 278
Bso31I	GGTCTC	1 cut(s)	428
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	30, 346, 381
BspACI	CCGC	4 cut(s)	14, 25, 227, 246
BspANI	GGCC	4 cut(s)	41, 249, 257, 278
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	83, 192
BspPI	GGATC	2 cut(s)	25, 341
BspT107I	GGYRCC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	428
BsrBI	CCGCTC	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	3 cut(s)	30, 346, 381
Bst2UI	CCWGG	4 cut(s)	35, 79, 128, 251
BstAUI	TGTACA	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	3 cut(s)	301, 319, 361
BstKTI	GATC	3 cut(s)	33, 349, 384
BstMAI	GTCTC	2 cut(s)	320, 428
BstMBI	GATC	3 cut(s)	30, 346, 381
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 60
BstNI	CCWGG	4 cut(s)	35, 79, 128, 251
BstNSI	RCATGY	2 cut(s)	67, 163
BstSCI	CCNGG	4 cut(s)	33, 77, 126, 249
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	4 cut(s)	41, 249, 257, 278
BtgZI	GCGATG	1 cut(s)	245
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	301, 319, 361
Cac8I	GCNNGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	4 cut(s)	67, 157, 180, 241
CviAII	CATG	4 cut(s)	64, 160, 403, 413
CviQI	GTAC	4 cut(s)	67, 157, 180, 241
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	3 cut(s)	32, 348, 383
DpnII	GATC	3 cut(s)	30, 346, 381
EaeI	YGGCCR	3 cut(s)	39, 247, 255
EciI	GGCGGA	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	191
EcoRII	CCWGG	4 cut(s)	33, 77, 126, 249
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	4 cut(s)	67, 163, 406, 416
FaiI	YATR	7 cut(s)	65, 161, 204, 206, 404, 414, 420
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	4 cut(s)	63, 159, 402, 412
FblI	GTMKAC	2 cut(s)	45, 132
Fnu4HI	GCNGC	3 cut(s)	228, 247, 387
FokI	GGATG	3 cut(s)	308, 326, 368
Fsp4HI	GCNGC	3 cut(s)	228, 247, 387
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	3 cut(s)	228, 247, 387
HaeIII	GGCC	4 cut(s)	41, 249, 257, 278
Hin1II	CATG	4 cut(s)	67, 163, 406, 416
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	3 cut(s)	46, 133, 157
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	4 cut(s)	88, 271, 305, 430
Hpy8I	GTNNAC	3 cut(s)	46, 133, 157
Hpy99I	CGWCG	4 cut(s)	47, 50, 269, 272
HpyAV	CCTTC	1 cut(s)	268
HpyCH4IV	ACGT	3 cut(s)	9, 93, 135
HpyCH4V	TGCA	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 60
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	3 cut(s)	9, 93, 135
Hsp92II	CATG	4 cut(s)	67, 163, 406, 416
Kzo9I	GATC	3 cut(s)	30, 346, 381
LmnI	GCTCC	2 cut(s)	266, 376
Lsp1109I	GCAGC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	3 cut(s)	9, 93, 135
MalI	GATC	3 cut(s)	32, 348, 383
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	3 cut(s)	30, 346, 381
MboII	GAAGA	3 cut(s)	40, 293, 295
MflI	RGATCY	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	1 cut(s)	106
MluNI	TGGCCA	1 cut(s)	257
MnlI	CCTC	5 cut(s)	43, 49, 95, 181, 345
Mox20I	TGGCCA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	2 cut(s)	138, 318
MslI	CAYNNNNRTG	1 cut(s)	417
Msp20I	TGGCCA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	246
MspR9I	CCNGG	4 cut(s)	35, 79, 128, 251
MvaI	CCWGG	4 cut(s)	35, 79, 128, 251
MwoI	GCNNNNNNNGC	2 cut(s)	11, 60
NdeII	GATC	3 cut(s)	30, 346, 381
NlaIII	CATG	4 cut(s)	67, 163, 406, 416
NlaIV	GGNNCC	2 cut(s)	83, 192
NspI	RCATGY	2 cut(s)	67, 163
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	3 cut(s)	229, 248, 388
Psp6I	CCWGG	4 cut(s)	33, 77, 126, 249
PspGI	CCWGG	4 cut(s)	33, 77, 126, 249
PspN4I	GGNNCC	2 cut(s)	83, 192
PspPI	GGNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	4 cut(s)	68, 158, 181, 242
RsaNI	GTAC	4 cut(s)	67, 157, 180, 241
RseI	CAYNNNNRTG	1 cut(s)	417
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	138, 318
SatI	GCNGC	3 cut(s)	228, 247, 387
Sau3AI	GATC	3 cut(s)	30, 346, 381
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	4 cut(s)	35, 79, 128, 251
SetI	ASST	9 cut(s)	12, 96, 138, 154, 181, 255, 263, 312, 324
SgrDI	CGTCGACG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	4 cut(s)	14, 25, 227, 246
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	4 cut(s)	33, 77, 126, 249
TaiI	ACGT	3 cut(s)	12, 96, 138
TaqI	TCGA	3 cut(s)	45, 212, 270
TasI	AATT	1 cut(s)	106
TatI	WGTACW	2 cut(s)	156, 240
TauI	GCSGC	2 cut(s)	230, 249
Tru1I	TTAA	2 cut(s)	138, 318
Tru9I	TTAA	2 cut(s)	138, 318
TseI	GCWGC	1 cut(s)	386
TspGWI	ACGGA	2 cut(s)	183, 253
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	2 cut(s)	67, 163
XmiI	GTMKAC	2 cut(s)	45, 132
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.