Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002806

Physical Location & Seq

Genomic Coordinates Reverse (-)

43300916 .. 43302001

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCTGACGTGGCAGAGAAAGAGCGGAAGATCCTGGTGGCAGTCGACGAGGGCGAGGAGAGCATGCGTGCTCTCTCCTGGTGCCTCAAGAACGTGGTTTCTCAAAATTCCAAAGATACCCTTATCCTGGTCTACGTTAAGCCCCCGAAAGCTGTGTACATGCCTCTAGATGGCACAGCGTATATGTTTTCGACTGATATTTTTGCTTCGATGGAGAACTACAAAAGCGAGGTGGCCGGCTGCGTCGTCGAGAAGGCCAAGAAGATGTGCAGGGATGCTCTCCAGCAGGACGTTAAGGTGGAGACGAGAGTAGAGACTGGTGATCCGAGGGATGTGATTTGCCATCTGGTGGAGCAGATCGGTGCTGATGTTTTGGTCATGGGTAGCCATGGCTATGGCCTCATCAAGAGGGCTTTCCTTGGTAGTGTGAGCAACCACTGTGCACAGAATGTTAAGTGCCCTGTGTTGATTGTGAAGAAGCCGAAAACAAATAGTGGGAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

168

Amino Acids

18.48

Weight (kDa)

8.17

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	9 - 159	1.2e-32	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62550
fragaria_vesca	FvH4_5g39370 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300
malus_domestica	MD03G1296200.v1.1 MD04G1194600.v1.1 MD11G1315600.v1.1 MD12G1206900.v1.1
prunus_persica	Prupe.6G314600_v2.0.a1 Prupe.6G314600_v2.0.a1 Prupe.8G271100_v2.0.a1
pyrus_communis	pycom04g17190 pycom12g19480
rosa_chinensis	RchiOBHm_Chr3g0456911 RchiOBHm_Chr7g0241661
rosa_laevigata	RLG00000000556 RLG00000025265 RLG00000025268
rosa_multiflora	Rmu_sc0000133.1_g000003 Rmu_sc0002268.1_g000009 Rmu_sc0019791.1_g000001 Rmu_sc0026340.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218840 Rroxscaffold_6G00422380
rosa_rugosa	Rorug03G0017000 Rorug03G0017000 Rorug07G0346000
rosa_samantha	Rh3AG077300 Rh3BG079100 Rh3CG079000 Rh3DG081000 Rh7AG500600 Rh7BG471700 Rh7CG517000 Rh7DG485500
rosa_wichuraiana	Rw3G006630 Rw7G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	81
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccBSI	CCGCTC	1 cut(s)	25
AccI	GTMKAC	2 cut(s)	45, 132
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	25, 317
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	106
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	3 cut(s)	127, 170, 349
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	3 cut(s)	33, 77, 126
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
Alw21I	GWGCWC	2 cut(s)	73, 445
Alw26I	GTCTC	2 cut(s)	296, 308
Alw44I	GTGCAC	1 cut(s)	441
AlwI	GGATC	2 cut(s)	25, 317
AoxI	GGCC	3 cut(s)	234, 255, 397
ApaLI	GTGCAC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	240
ApoI	RAATTY	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	332
BaeGI	GKGCMC	2 cut(s)	445, 461
BanI	GGYRCC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	73, 445
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	3 cut(s)	164, 205, 351
BciT130I	CCWGG	3 cut(s)	35, 79, 128
BcoDI	GTCTC	2 cut(s)	296, 308
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	242
Bme1390I	CCNGG	3 cut(s)	35, 79, 128
BmgBI	CACGTC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	83
BmrFI	CCNGG	3 cut(s)	35, 79, 128
BmsI	GCATC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	3 cut(s)	326, 388, 418
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 170, 349
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	3 cut(s)	35, 79, 128
BseDI	CCNNGG	3 cut(s)	326, 388, 418
BseGI	GGATG	2 cut(s)	280, 337
BseLI	CCNNNNNNNGG	3 cut(s)	127, 170, 349
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	2 cut(s)	445, 461
BseXI	GCAGC	1 cut(s)	227
BsgI	GTGCAG	1 cut(s)	289
BshFI	GGCC	3 cut(s)	236, 257, 399
BshNI	GGYRCC	1 cut(s)	81
BsiHKAI	GWGCWC	2 cut(s)	73, 445
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	3 cut(s)	127, 170, 349
BsmAI	GTCTC	2 cut(s)	296, 308
BsmBI	CGTCTC	1 cut(s)	296
BsnI	GGCC	3 cut(s)	236, 257, 399
Bsp1286I	GDGCHC	3 cut(s)	73, 445, 461
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	30, 322, 357
Bsp19I	CCATGG	1 cut(s)	388
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	3 cut(s)	236, 257, 399
BspLI	GGNNCC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	25, 317
BspT107I	GGYRCC	1 cut(s)	81
BsrBI	CCGCTC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	3 cut(s)	326, 388, 418
BssMI	GATC	3 cut(s)	30, 322, 357
BssT1I	CCWWGG	2 cut(s)	388, 418
Bst2UI	CCWGG	3 cut(s)	35, 79, 128
Bst4CI	ACNGT	1 cut(s)	440
BstAUI	TGTACA	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	65, 69, 238
BstDSI	CCRYGG	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	280, 337
BstKTI	GATC	3 cut(s)	33, 325, 360
BstMAI	GTCTC	2 cut(s)	296, 308
BstMBI	GATC	3 cut(s)	30, 322, 357
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 60
BstNI	CCWGG	3 cut(s)	35, 79, 128
BstNSI	RCATGY	2 cut(s)	67, 163
BstSCI	CCNGG	3 cut(s)	33, 77, 126
BstSLI	GKGCMC	2 cut(s)	445, 461
BstV1I	GCAGC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	236, 257, 399
BtgI	CCRYGG	1 cut(s)	388
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	280, 337
BtsIMutI	CAGTG	1 cut(s)	436
Cac8I	GCNNGC	3 cut(s)	65, 69, 238
Cfr10I	RCCGGY	1 cut(s)	236
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	4 cut(s)	64, 160, 379, 389
CviQI	GTAC	1 cut(s)	157
DpnI	GATC	3 cut(s)	32, 324, 359
DpnII	GATC	3 cut(s)	30, 322, 357
EaeI	YGGCCR	1 cut(s)	234
Eco130I	CCWWGG	2 cut(s)	388, 418
EcoRII	CCWGG	3 cut(s)	33, 77, 126
EcoT14I	CCWWGG	2 cut(s)	388, 418
ErhI	CCWWGG	2 cut(s)	388, 418
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	4 cut(s)	67, 163, 382, 392
FaiI	YATR	7 cut(s)	65, 161, 183, 185, 380, 390, 396
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	4 cut(s)	63, 159, 378, 388
FblI	GTMKAC	2 cut(s)	45, 132
Fnu4HI	GCNGC	1 cut(s)	241
FokI	GGATG	2 cut(s)	287, 344
Fsp4HI	GCNGC	1 cut(s)	241
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	1 cut(s)	241
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	3 cut(s)	236, 257, 399
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	1 cut(s)	232
Hin1II	CATG	4 cut(s)	67, 163, 382, 392
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	4 cut(s)	46, 133, 157, 443
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	4 cut(s)	88, 167, 250, 406
Hpy8I	GTNNAC	4 cut(s)	46, 133, 157, 443
Hpy99I	CGWCG	3 cut(s)	50, 248, 251
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	4 cut(s)	9, 93, 135, 291
HpyCH4V	TGCA	2 cut(s)	270, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 60
HpySE526I	ACGT	4 cut(s)	9, 93, 135, 291
Hsp92II	CATG	4 cut(s)	67, 163, 382, 392
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	30, 322, 357
LmnI	GCTCC	2 cut(s)	352, 498
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	4 cut(s)	9, 93, 135, 291
MalI	GATC	3 cut(s)	32, 324, 359
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	3 cut(s)	30, 322, 357
MboII	GAAGA	3 cut(s)	40, 274, 487
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	3 cut(s)	73, 445, 461
MluCI	AATT	1 cut(s)	106
MnlI	CCTC	8 cut(s)	43, 49, 95, 174, 223, 321, 402, 410
MroNI	GCCGGC	1 cut(s)	236
MseI	TTAA	3 cut(s)	138, 294, 453
MslI	CAYNNNNRTG	1 cut(s)	393
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	3 cut(s)	35, 79, 128
MvaI	CCWGG	3 cut(s)	35, 79, 128
MwoI	GCNNNNNNNGC	2 cut(s)	11, 60
NaeI	GCCGGC	1 cut(s)	238
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	3 cut(s)	30, 322, 357
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	4 cut(s)	67, 163, 382, 392
NlaIV	GGNNCC	1 cut(s)	83
NspI	RCATGY	2 cut(s)	67, 163
PaeI	GCATGC	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	242
Psp6I	CCWGG	3 cut(s)	33, 77, 126
PspGI	CCWGG	3 cut(s)	33, 77, 126
PspN4I	GGNNCC	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	393
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	138, 294, 453
SatI	GCNGC	1 cut(s)	241
Sau3AI	GATC	3 cut(s)	30, 322, 357
ScrFI	CCNGG	3 cut(s)	35, 79, 128
SduI	GDGCHC	3 cut(s)	73, 445, 461
SetI	ASST	7 cut(s)	12, 96, 138, 154, 234, 294, 300
SfaNI	GCATC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SphI	GCATGC	1 cut(s)	67
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	3 cut(s)	33, 77, 126
StyI	CCWWGG	2 cut(s)	388, 418
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	4 cut(s)	12, 96, 138, 294
TaqI	TCGA	4 cut(s)	45, 191, 209, 249
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	156
Tru1I	TTAA	3 cut(s)	138, 294, 453
Tru9I	TTAA	3 cut(s)	138, 294, 453
TscAI	CASTG	1 cut(s)	443
TseI	GCWGC	1 cut(s)	240
TspRI	CASTG	1 cut(s)	443
Van91I	CCANNNNNTGG	1 cut(s)	349
VneI	GTGCAC	1 cut(s)	441
XapI	RAATTY	1 cut(s)	106
XbaI	TCTAGA	1 cut(s)	166
XceI	RCATGY	2 cut(s)	67, 163
XmiI	GTMKAC	2 cut(s)	45, 132
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.