RLG00000025268

Universal stress protein A-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002806
Physical Location & Seq
Reverse (-)
43493331 .. 43494389
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025268

Sequence Viewer

Length: 507 bp
ATGGTTGACGTGGCAGAGAAAGAGCGGAAGATCCTGGTGGCAGTCGACGAGGGCGAGGAGAGCATGTACGCTCTCTCCTGGTGCCTCAAGAACGTGGTTTCTCAAAATTCCAAAGATACCCTTATCCTGGTCTACGTTAAGCCCCCGAAACCCGTGTACATGCCTCTGGATGGCGCAGGGTATATGTTTTCGACTGATATTTTTGCTTCGATGGAGAAGTACAAAGGCGAGGTGGCTGGCTGCGTCGTCGAGAAAGCCAAGAAGATGTGCAGGGATGCTCTCCAGCAGGATGTTAAGGTGGAGACGAGGGTAGAGACTGGTGATCCGAGGGATGTGATTTGCCATCTGGTGGAGCAGATCGGTGCTGATGTTTTGGTCATGGGTAGCCATGGCTATGGTCTCATCAAGAGGGCTTTCCTTGGAAGTGTGAGCAACCACTGTGCACAGAATGTTAAGTGCCCTGTGTTGATTGTGAAGAAGCCGAAAACAAATAGTGGGAGCAAATGA

Protein Analysis

169

Amino Acids

18.48

Weight (kDa)

8.15

Isoelectric Point (pI)

28.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 9 - 159 9.8e-33 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 349
AccBSI CCGCTC 1 cut(s) 25
AccI GTMKAC 2 cut(s) 45, 132
AciI CCGC 1 cut(s) 25
AclWI GGATC 2 cut(s) 25, 317
AcsI RAATTY 1 cut(s) 106
AfaI GTAC 3 cut(s) 68, 158, 221
AfiI CCNNNNNNNGG 3 cut(s) 127, 170, 349
AjiI CACGTC 1 cut(s) 10
AjnI CCWGG 3 cut(s) 33, 77, 126
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 3 cut(s) 296, 308, 404
Alw44I GTGCAC 1 cut(s) 441
AlwI GGATC 2 cut(s) 25, 317
ApaLI GTGCAC 1 cut(s) 441
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 1 cut(s) 106
AspLEI GCGC 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 332
BaeGI GKGCMC 2 cut(s) 445, 461
BanI GGYRCC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 1 cut(s) 227
BccI CCATC 3 cut(s) 164, 205, 351
BciT130I CCWGG 3 cut(s) 35, 79, 128
BcoDI GTCTC 3 cut(s) 296, 308, 404
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
Bme1390I CCNGG 3 cut(s) 35, 79, 128
BmgBI CACGTC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 3 cut(s) 35, 79, 128
BmsI GCATC 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 3 cut(s) 326, 388, 418
BsaXI ACNNNNNCTCC 4 cut(s) 50, 59, 80, 89
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 170, 349
Bse1I ACTGG 1 cut(s) 322
BseBI CCWGG 3 cut(s) 35, 79, 128
BseDI CCNNGG 3 cut(s) 326, 388, 418
BseGI GGATG 4 cut(s) 175, 280, 295, 337
BseLI CCNNNNNNNGG 3 cut(s) 127, 170, 349
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 2 cut(s) 445, 461
BseXI GCAGC 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 289
BshNI GGYRCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 445
BslI CCNNNNNNNGG 3 cut(s) 127, 170, 349
BsmAI GTCTC 3 cut(s) 296, 308, 404
BsmBI CGTCTC 1 cut(s) 296
Bso31I GGTCTC 1 cut(s) 404
Bsp1286I GDGCHC 2 cut(s) 445, 461
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 3 cut(s) 30, 322, 357
Bsp19I CCATGG 1 cut(s) 388
BspACI CCGC 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 2 cut(s) 25, 317
BspT107I GGYRCC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 25
BsrGI TGTACA 1 cut(s) 156
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 3 cut(s) 326, 388, 418
BssMI GATC 3 cut(s) 30, 322, 357
BssT1I CCWWGG 2 cut(s) 388, 418
Bst2UI CCWGG 3 cut(s) 35, 79, 128
Bst4CI ACNGT 1 cut(s) 440
BstAUI TGTACA 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 238
BstDSI CCRYGG 1 cut(s) 388
BstF5I GGATG 4 cut(s) 175, 280, 295, 337
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 3 cut(s) 33, 325, 360
BstMAI GTCTC 3 cut(s) 296, 308, 404
BstMBI GATC 3 cut(s) 30, 322, 357
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNI CCWGG 3 cut(s) 35, 79, 128
BstNSI RCATGY 2 cut(s) 67, 163
BstSCI CCNGG 3 cut(s) 33, 77, 126
BstSLI GKGCMC 2 cut(s) 445, 461
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 395
BstYI RGATCY 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 388
BtrI CACGTC 1 cut(s) 10
BtsCI GGATG 4 cut(s) 175, 280, 295, 337
BtsIMutI CAGTG 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 238
CfoI GCGC 1 cut(s) 176
CseI GACGC 1 cut(s) 232
Csp6I GTAC 3 cut(s) 67, 157, 220
CviAII CATG 4 cut(s) 64, 160, 379, 389
CviJI RGCY 8 cut(s) 142, 236, 240, 257, 387, 393, 413, 481
CviKI_1 RGCY 8 cut(s) 142, 236, 240, 257, 387, 393, 413, 481
CviQI GTAC 3 cut(s) 67, 157, 220
DpnI GATC 3 cut(s) 32, 324, 359
DpnII GATC 3 cut(s) 30, 322, 357
Eco130I CCWWGG 2 cut(s) 388, 418
Eco31I GGTCTC 1 cut(s) 404
EcoRII CCWGG 3 cut(s) 33, 77, 126
EcoT14I CCWWGG 2 cut(s) 388, 418
ErhI CCWWGG 2 cut(s) 388, 418
Esp3I CGTCTC 1 cut(s) 296
FaeI CATG 4 cut(s) 67, 163, 382, 392
FaiI YATR 7 cut(s) 65, 161, 183, 185, 380, 390, 396
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 4 cut(s) 63, 159, 378, 388
FblI GTMKAC 2 cut(s) 45, 132
Fnu4HI GCNGC 1 cut(s) 241
FokI GGATG 4 cut(s) 182, 287, 302, 344
Fsp4HI GCNGC 1 cut(s) 241
GlaI GCGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 241
GsuI CTGGAG 1 cut(s) 266
HgaI GACGC 1 cut(s) 232
HhaI GCGC 1 cut(s) 176
Hin1II CATG 4 cut(s) 67, 163, 382, 392
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 2 cut(s) 7, 46
HindII GTYRAC 2 cut(s) 7, 46
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 5 cut(s) 7, 46, 133, 157, 443
Hpy188I TCNGA 1 cut(s) 327
Hpy188III TCNNGA 4 cut(s) 88, 167, 250, 406
Hpy8I GTNNAC 5 cut(s) 7, 46, 133, 157, 443
Hpy99I CGWCG 3 cut(s) 50, 248, 251
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4IV ACGT 3 cut(s) 9, 93, 135
HpyCH4V TGCA 2 cut(s) 270, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpySE526I ACGT 3 cut(s) 9, 93, 135
Hsp92II CATG 4 cut(s) 67, 163, 382, 392
HspAI GCGC 1 cut(s) 174
Kzo9I GATC 3 cut(s) 30, 322, 357
LmnI GCTCC 2 cut(s) 352, 498
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 1 cut(s) 265
MaeII ACGT 3 cut(s) 9, 93, 135
MalI GATC 3 cut(s) 32, 324, 359
MbiI CCGCTC 1 cut(s) 25
MboI GATC 3 cut(s) 30, 322, 357
MboII GAAGA 3 cut(s) 40, 274, 487
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 2 cut(s) 445, 461
MluCI AATT 1 cut(s) 106
MnlI CCTC 8 cut(s) 43, 49, 95, 174, 223, 300, 321, 402
MseI TTAA 3 cut(s) 138, 294, 453
MslI CAYNNNNRTG 1 cut(s) 393
MspR9I CCNGG 3 cut(s) 35, 79, 128
MvaI CCWGG 3 cut(s) 35, 79, 128
MwoI GCNNNNNNNGC 1 cut(s) 60
NcoI CCATGG 1 cut(s) 388
NdeII GATC 3 cut(s) 30, 322, 357
NlaIII CATG 4 cut(s) 67, 163, 382, 392
NlaIV GGNNCC 1 cut(s) 83
NspI RCATGY 2 cut(s) 67, 163
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PflMI CCANNNNNTGG 1 cut(s) 349
PkrI GCNGC 1 cut(s) 242
Psp6I CCWGG 3 cut(s) 33, 77, 126
PspGI CCWGG 3 cut(s) 33, 77, 126
PspN4I GGNNCC 1 cut(s) 83
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 3 cut(s) 68, 158, 221
RsaNI GTAC 3 cut(s) 67, 157, 220
RseI CAYNNNNRTG 1 cut(s) 393
SalI GTCGAC 1 cut(s) 44
SaqAI TTAA 3 cut(s) 138, 294, 453
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 3 cut(s) 30, 322, 357
ScrFI CCNGG 3 cut(s) 35, 79, 128
SduI GDGCHC 2 cut(s) 445, 461
SetI ASST 5 cut(s) 12, 96, 138, 234, 300
SfaNI GCATC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 106
SsiI CCGC 1 cut(s) 25
StyD4I CCNGG 3 cut(s) 33, 77, 126
StyI CCWWGG 2 cut(s) 388, 418
TaaI ACNGT 1 cut(s) 440
TaiI ACGT 3 cut(s) 12, 96, 138
TaqI TCGA 4 cut(s) 45, 191, 209, 249
TasI AATT 1 cut(s) 106
TatI WGTACW 2 cut(s) 156, 219
Tru1I TTAA 3 cut(s) 138, 294, 453
Tru9I TTAA 3 cut(s) 138, 294, 453
TscAI CASTG 1 cut(s) 443
TseI GCWGC 1 cut(s) 240
TspRI CASTG 1 cut(s) 443
Van91I CCANNNNNTGG 1 cut(s) 349
VneI GTGCAC 1 cut(s) 441
XapI RAATTY 1 cut(s) 106
XceI RCATGY 2 cut(s) 67, 163
XmiI GTMKAC 2 cut(s) 45, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.