Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026340.1

Orthogroup ID

OG0002806

Physical Location & Seq

Genomic Coordinates Forward (+)

14184 .. 14920

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026340.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggaaggggatattagtatgaagaaaatcgtggtggcagtggacgagagcgaagagagcatgcacgcactttcctggtgtctgggaaacctttcctctcaaaaagccactgctgctgccaataccagtaccagtcttgttcttctctatgtcaaaccaccacctccacttcattcctcctatgacgctgcaggatacatgttttcgaagaacgatgtagtcgccgcgatggagaagtacgggaatgacatgataaattcagtgatgcaacgagctgaagctgtctacaaaaacttcaatgtcaacgccaatgtaaatatcgagagagtggttggcagcggagatccgaaagatgtgatttgcaacgcagtcgagaagcttcgagctgataccttggtcatgggatcccatggctatggtttcttcaagagggctcttcttggaagcgtgagtgattattgtgcgaaacacgtcgagtgtccagttgtgattgtcaagcatcctgaccacaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

171

Amino Acids

18.6

Weight (kDa)

6.29

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62550
fragaria_vesca	FvH4_5g39370 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300 FvH4_6g07300
malus_domestica	MD03G1296200.v1.1 MD04G1194600.v1.1 MD11G1315600.v1.1 MD12G1206900.v1.1
prunus_persica	Prupe.6G314600_v2.0.a1 Prupe.6G314600_v2.0.a1 Prupe.8G271100_v2.0.a1
pyrus_communis	pycom04g17190 pycom12g19480
rosa_chinensis	RchiOBHm_Chr3g0456911 RchiOBHm_Chr7g0241661
rosa_laevigata	RLG00000000556 RLG00000025265 RLG00000025268
rosa_multiflora	Rmu_sc0000133.1_g000003 Rmu_sc0002268.1_g000009 Rmu_sc0019791.1_g000001 Rmu_sc0026340.1_g000004
rosa_roxburghii	Rroxscaffold_3G00218840 Rroxscaffold_6G00422380
rosa_rugosa	Rorug03G0017000 Rorug03G0017000 Rorug07G0346000
rosa_samantha	Rh3AG077300 Rh3BG079100 Rh3CG079000 Rh3DG081000 Rh7AG500600 Rh7BG471700 Rh7CG517000 Rh7DG485500
rosa_wichuraiana	Rw3G006630 Rw7G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	227
AciI	CCGC	2 cut(s)	225, 339
AclWI	GGATC	3 cut(s)	338, 399, 412
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	2 cut(s)	130, 239
AflIII	ACRYGT	2 cut(s)	198, 469
AgsI	TTSAA	2 cut(s)	298, 427
AjiI	CACGTC	1 cut(s)	472
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	4 cut(s)	275, 281, 379, 386
AluI	AGCT	4 cut(s)	275, 281, 379, 386
AlwI	GGATC	3 cut(s)	338, 399, 412
ApeKI	GCWGC	4 cut(s)	113, 116, 188, 336
ApoI	RAATTY	1 cut(s)	256
Asp700I	GAANNNNTTC	1 cut(s)	91
AsuII	TTCGAA	1 cut(s)	206
BaeI	ACNNNNGTAYC	2 cut(s)	381, 414
BamHI	GGATCC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	436
BbvI	GCAGC	4 cut(s)	100, 103, 175, 348
BccI	CCATC	1 cut(s)	223
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BciT130I	CCWGG	1 cut(s)	76
BciVI	GTATCC	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	188
BisI	GCNGC	5 cut(s)	114, 117, 189, 225, 337
BlsI	GCNGC	5 cut(s)	115, 118, 190, 226, 338
Bme1390I	CCNGG	1 cut(s)	76
BmgBI	CACGTC	1 cut(s)	472
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	2 cut(s)	255, 508
Bpu14I	TTCGAA	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	393, 409
Bse1I	ACTGG	3 cut(s)	126, 132, 482
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	393, 409
BseGI	GGATG	1 cut(s)	499
BseNI	ACTGG	3 cut(s)	126, 132, 482
BseXI	GCAGC	4 cut(s)	100, 103, 175, 348
Bsh1236I	CGCG	1 cut(s)	227
Bsp119I	TTCGAA	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	343, 404
Bsp19I	CCATGG	1 cut(s)	409
BspACI	CCGC	2 cut(s)	225, 339
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	406
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	3 cut(s)	338, 399, 412
BspQI	GCTCTTC	1 cut(s)	441
BspT104I	TTCGAA	1 cut(s)	206
BsrI	ACTGG	3 cut(s)	126, 132, 482
BssECI	CCNNGG	2 cut(s)	393, 409
BssMI	GATC	2 cut(s)	343, 404
BssT1I	CCWWGG	2 cut(s)	393, 409
Bst2UI	CCWGG	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	48, 441
BstBI	TTCGAA	1 cut(s)	206
BstC8I	GCNNGC	2 cut(s)	62, 66
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	1 cut(s)	499
BstFNI	CGCG	1 cut(s)	227
BstKTI	GATC	2 cut(s)	346, 407
BstMBI	GATC	2 cut(s)	343, 404
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 113
BstNI	CCWGG	1 cut(s)	76
BstNSI	RCATGY	2 cut(s)	64, 202
BstSCI	CCNGG	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	4 cut(s)	100, 103, 175, 348
BstX2I	RGATCY	2 cut(s)	343, 404
BstXI	CCANNNNNNTGG	1 cut(s)	416
BstYI	RGATCY	2 cut(s)	343, 404
BsuI	GTATCC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	409
BtgZI	GCGATG	1 cut(s)	242
BtrI	CACGTC	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	499
BtsI	GCAGTG	2 cut(s)	45, 108
BtsIMutI	CAGTG	3 cut(s)	45, 108, 267
Cac8I	GCNNGC	2 cut(s)	62, 66
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	129, 238
CviAII	CATG	5 cut(s)	61, 199, 250, 400, 410
CviJI	RGCY	7 cut(s)	107, 275, 281, 379, 386, 414, 434
CviKI_1	RGCY	7 cut(s)	107, 275, 281, 379, 386, 414, 434
CviQI	GTAC	2 cut(s)	129, 238
DpnI	GATC	2 cut(s)	345, 406
DpnII	GATC	2 cut(s)	343, 404
Eam1104I	CTCTTC	2 cut(s)	48, 441
EarI	CTCTTC	2 cut(s)	48, 441
Eco130I	CCWWGG	2 cut(s)	393, 409
Eco24I	GRGCYC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	2 cut(s)	393, 409
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	2 cut(s)	393, 409
FaeI	CATG	5 cut(s)	64, 202, 253, 403, 413
FaiI	YATR	9 cut(s)	20, 62, 150, 183, 200, 251, 401, 411, 417
FatI	CATG	5 cut(s)	60, 198, 249, 399, 409
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	5 cut(s)	114, 117, 189, 225, 337
FokI	GGATG	1 cut(s)	486
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	5 cut(s)	114, 117, 189, 225, 337
GluI	GCNGC	5 cut(s)	114, 117, 189, 225, 337
HgaI	GACGC	1 cut(s)	194
Hin1II	CATG	5 cut(s)	64, 202, 253, 403, 413
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	377
Hpy166II	GTNNAC	3 cut(s)	43, 286, 304
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	4 cut(s)	322, 373, 427, 503
Hpy8I	GTNNAC	3 cut(s)	43, 286, 304
Hpy99I	CGWCG	1 cut(s)	476
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	4 cut(s)	64, 191, 268, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 113
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	5 cut(s)	64, 202, 253, 403, 413
Kzo9I	GATC	2 cut(s)	343, 404
LguI	GCTCTTC	1 cut(s)	441
LpnPI	CCDG	7 cut(s)	61, 68, 88, 139, 145, 177, 495
Lsp1109I	GCAGC	4 cut(s)	100, 103, 175, 348
LweI	GCATC	2 cut(s)	255, 508
MaeII	ACGT	1 cut(s)	471
MalI	GATC	2 cut(s)	345, 406
MboI	GATC	2 cut(s)	343, 404
MboII	GAAGA	6 cut(s)	34, 65, 134, 220, 415, 428
MflI	RGATCY	2 cut(s)	343, 404
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	1 cut(s)	256
MnlI	CCTC	4 cut(s)	106, 174, 187, 423
MroXI	GAANNNNTTC	1 cut(s)	91
MslI	CAYNNNNRTG	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	76
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	57, 113
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	2 cut(s)	343, 404
NlaIII	CATG	5 cut(s)	64, 202, 253, 403, 413
NlaIV	GGNNCC	1 cut(s)	406
NspI	RCATGY	2 cut(s)	64, 202
NspV	TTCGAA	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	64
PciI	ACATGT	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	441
PdmI	GAANNNNTTC	1 cut(s)	91
PkrI	GCNGC	5 cut(s)	115, 118, 190, 226, 338
PscI	ACATGT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	193
PsuI	RGATCY	2 cut(s)	343, 404
RsaI	GTAC	2 cut(s)	130, 239
RsaNI	GTAC	2 cut(s)	129, 238
RseI	CAYNNNNRTG	1 cut(s)	414
SapI	GCTCTTC	1 cut(s)	441
SatI	GCNGC	5 cut(s)	114, 117, 189, 225, 337
Sau3AI	GATC	2 cut(s)	343, 404
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	436
SetI	ASST	8 cut(s)	93, 166, 277, 283, 381, 388, 395, 474
SfaNI	GCATC	2 cut(s)	255, 508
SfcI	CTRYAG	1 cut(s)	189
SfuI	TTCGAA	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	414
SphI	GCATGC	1 cut(s)	64
Sse9I	AATT	1 cut(s)	256
SsiI	CCGC	2 cut(s)	225, 339
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	2 cut(s)	393, 409
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	5 cut(s)	206, 321, 372, 382, 474
TasI	AATT	1 cut(s)	256
TauI	GCSGC	1 cut(s)	227
TscAI	CASTG	3 cut(s)	45, 115, 267
TseI	GCWGC	4 cut(s)	113, 116, 188, 336
TspDTI	ATGAA	2 cut(s)	35, 161
TspRI	CASTG	3 cut(s)	45, 115, 267
XapI	RAATTY	1 cut(s)	256
XceI	RCATGY	2 cut(s)	64, 202
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.