Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Reverse (-)

5816942 .. 5821066

Gene Structure 4125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G09140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2214 bp

ATGATCGACGATTCGTCTCTTACGGCGGAGATGGAGGAGGAAGAATCTCCGGCGACGACGATTGTACCGAGAGAGCCACCGAAGATTCAACGCTTAGAAGAATCAGTAGTCAACCGTATCGCAGCTGGTGAAGTAATCCAGCGTCCAGTTTCAGCTGTGAAAGAGCTCGTTGAGAACAGCCTCGACGCCGATTCAAGTTCCATAAGCGTCGTTGTCAAAGACGGTGGTTTGAAACTCATTCAAGTCTCCGACGACGGTCACGGTATTAGACGTGAAGACTTGCCGATACTATGCGAGAGACATACAACATCGAAGCTGACTAAGTTTGAGGATTTGTTCTCTCTGAGTTCAATGGGATTTAGAGGAGAGGCATTAGCTAGTATGACCTATGTTGCTCATGTTACAGTGACTACTATTACTAAAGGCCAGATTCATGGTTATAGAGTGTCTTATAGAGATGGTGTCATGGAGCATGAACCAAAGGCGTGTGCTGCTGTCAAAGGAACACAGATAATGGTGGAGAATTTGTTCTACAATATGATTGCTAGAAGGAAGACACTTCAAAATTCTGCTGATGATTACGGGAAAATCGTGGATTTGCTGAGCCGGATGGCTATTCATTACAATAATGTCAGCTTTTCTTGTCGAAAGCATGGAGCTGTTAAGGCTGATGTTCACTCAGTCGTGTCACCTTCAAGGCTTGATTCAATTAGGTCTGTATATGGAGTATCAGTTGCAAAGAACTTGATGAAAGTAGAAGTTTCCTCCTGTGACTCCTCTGGTTGTACTTTTGATATGGAGGGTTTCATATCCAATTCTAACTATGTTGCTAAGAAGACTATATTGGTGCTTTTCATTAATGATAGATTGGTGGAATGCTCTGCCTTAAAAAGAGCCATTGAAATTGTTTATGCTGCAACATTGCCAAAAGCATCAAAACCTTTTGTCTACATGTCAATCAATTTGCCACGGGAACATGTTGATATCAATATTCACCCAACAAAGAAAGAGGTTAGCCTTCTAAACCAGGAAATCATTATTGAGATGATACAGTCAGAGGTTGAAGTAAAACTGAGAAACGCAAATGATACTAGGACGTTTCAAGAGCAGAAAGTGGAATACATTCAATCTACGTTAACATCTCAGAAAAGTGATTCTCCAGTTTCTCAGAAGCCTTCTGGACAAAAGACACAGAAAGTTCCTGTGAACAAAATGGTGAGAACAGATTCATCAGATCCAGCTGGAAGGTTACATGCCTTTTTGCAACCCAAGCCACAAAGTCTCCCTGACAAGGTTTCTAGTTTGAGTGTAGTAAGGTCTTCTGTAAGGCAAAGAAGAAACCCAAAGGAAACTGCTGATCTTTCTAGTGTCCAGGAACTTATTGCTGGAGTTGACAGCTGCTGCCATCCAGGTATGCTGGAGACTGTAAGGAATTGCACATATGTTGGAATGGCAGATGATGTTTTTGCTTTAGTTCAGTATAACACCCATCTATATCTAGCAAATGTGGTGAATCTCAGCAAAGAGCTAATGTATCAGCAAACTCTTCGTCGTTTTGCTCATTTTAACGCAATACAGCTTAGCGATCCAGCCCCTTTGTCAGAGTTGATATTGTTGGCTCTGAAAGAGGAGGATCTAGATCCAGGAAATGATACAAAAGATGATCTGAAAGAAAGAATTGCTGAAATGAATACAGAACTCCTCAAGGAAAAAGCAGAAATGTTAGAGGAGTATTTCAGCGTGCACATTGACTCCAGTGCAAATTTGTCAAGGCTTCCTGTGATACTCGACCAGTATACACCTGACATGGATCGTGTTCCTGAATTTTTACTATGCTTGGGAAATGATGTTGAGTGGGAAGATGAGAAGAGTTGCTTTCAAGGAGTTTCTGCAGCTATTGGGAACTTTTACGCCATGCATCCTCCTCTTTTGCCAAACCCATCGGGTGACGGTATTCAGTTCTATAGTAAGAGAGGTGAGAGCTCTCAGGAAAAGTCAGATTTAGAGGGTAACGTCGATATGGAGGACAATCTTGACCAAGATCTTCTGTCAGATGCTGAAAACGCATGGGCACAACGTGAATGGTCAATCCAACACGTGTTGTTTCCGTCAATGAGATTGTTCTTGAAGCCACCAGCTTCCATGGCTTCAAATGGGACTTTTGTAAAGGTAGCATCCCTTGAAAAGCTGTACAAGATATTCGAACGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

737

Amino Acids

82.36

Weight (kDa)

5.4

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	48 - 104	4.5e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	51 - 153	1.9e-14	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	237 - 358	1.7e-28	DNA mismatch repair protein, C-terminal domain
Mlh1_C	PF16413	454 - 737	1.6e-82	DNA mismatch repair protein Mlh1 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	948, 1796
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	5 cut(s)	1229, 1580, 1634, 1641, 1818
AcsI	RAATTY	4 cut(s)	523, 565, 1762, 1823
AcvI	CACGTG	1 cut(s)	2098
AcyI	GRCGYC	1 cut(s)	186
AdeI	CACNNNGTG	1 cut(s)	2078
AfaI	GTAC	3 cut(s)	66, 787, 2192
AfiI	CCNNNNNNNGG	1 cut(s)	1291
AflIII	ACRYGT	4 cut(s)	951, 976, 2095, 2097
AhdI	GACNNNNNGTC	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	272
AjnI	CCWGG	4 cut(s)	1026, 1371, 1408, 1642
AjuI	GAANNNNNNNTTGG	2 cut(s)	827, 859
AloI	GAACNNNNNNTCC	2 cut(s)	512, 544
Alw21I	GWGCWC	3 cut(s)	168, 1746, 1985
Alw26I	GTCTC	5 cut(s)	21, 250, 292, 1286, 1415
Alw44I	GTGCAC	1 cut(s)	1742
AlwI	GGATC	5 cut(s)	1229, 1580, 1634, 1641, 1818
AlwNI	CAGNNNCTG	2 cut(s)	1401, 2057
AoxI	GGCC	1 cut(s)	424
ApaLI	GTGCAC	1 cut(s)	1742
ApeKI	GCWGC	6 cut(s)	122, 491, 914, 1398, 1401, 1892
ApoI	RAATTY	4 cut(s)	523, 565, 1762, 1823
ArsI	GACNNNNNNTTYG	2 cut(s)	1534, 1566
AseI	ATTAAT	1 cut(s)	858
Asp700I	GAANNNNTTC	3 cut(s)	527, 1122, 1225
AsuHPI	GGTGA	7 cut(s)	140, 681, 986, 1228, 1522, 1958, 1988
AsuII	TTCGAA	1 cut(s)	2202
BaeGI	GKGCMC	2 cut(s)	1746, 2074
BaeI	ACNNNNGTAYC	2 cut(s)	48, 81
BanII	GRGCYC	2 cut(s)	168, 1985
BbrPI	CACGTG	1 cut(s)	2098
BbsI	GAAGAC	4 cut(s)	282, 560, 842, 1311
Bbv12I	GWGCWC	3 cut(s)	168, 1746, 1985
BbvI	GCAGC	6 cut(s)	134, 478, 901, 1385, 1388, 1904
BccI	CCATC	6 cut(s)	25, 452, 604, 1413, 1497, 1948
BceAI	ACGGC	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	1529, 1563
BciT130I	CCWGG	4 cut(s)	1028, 1373, 1410, 1644
BcoDI	GTCTC	5 cut(s)	21, 250, 292, 1286, 1415
BfaI	CTAG	7 cut(s)	378, 546, 1092, 1299, 1365, 1499, 1637
BfmI	CTRYAG	2 cut(s)	1890, 1963
BglII	AGATCT	1 cut(s)	2041
BisI	GCNGC	6 cut(s)	123, 492, 915, 1399, 1402, 1893
BlpI	GCTNAGC	2 cut(s)	602, 1580
BlsI	GCNGC	6 cut(s)	124, 493, 916, 1400, 1403, 1894
Bme1390I	CCNGG	4 cut(s)	1028, 1373, 1410, 1644
BmeRI	GACNNNNNGTC	1 cut(s)	13
BmgBI	CACGTC	1 cut(s)	272
BmrFI	CCNGG	4 cut(s)	1028, 1373, 1410, 1644
BmsI	GCATC	5 cut(s)	941, 1927, 2044, 2183, 2198
BoxI	GACNNNNGTC	1 cut(s)	255
BpiI	GAAGAC	4 cut(s)	282, 560, 842, 1311
BpmI	CTGGAG	4 cut(s)	1143, 1407, 1439, 1738
Bpu1102I	GCTNAGC	2 cut(s)	602, 1580
Bpu14I	TTCGAA	1 cut(s)	2202
BpuEI	CTTGAG	1 cut(s)	1688
BsaAI	YACGTR	1 cut(s)	2098
BsaBI	GATNNNNATC	1 cut(s)	1638
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	968, 2142
BsaXI	ACNNNNNCTCC	8 cut(s)	512, 542, 717, 747, 1266, 1296, 1736, 1766
Bsc4I	CCNNNNNNNGG	1 cut(s)	1291
Bse1I	ACTGG	4 cut(s)	146, 1160, 1755, 1792
Bse3DI	GCAATG	1 cut(s)	920
Bse8I	GATNNNNATC	1 cut(s)	1638
BseBI	CCWGG	4 cut(s)	1028, 1373, 1410, 1644
BseDI	CCNNGG	2 cut(s)	968, 2142
BseGI	GGATG	4 cut(s)	615, 1405, 1918, 2174
BseJI	GATNNNNATC	1 cut(s)	1638
BseLI	CCNNNNNNNGG	1 cut(s)	1291
BseMI	GCAATG	1 cut(s)	920
BseMII	CTCAG	8 cut(s)	335, 593, 693, 1064, 1157, 1181, 1531, 2000
BseNI	ACTGG	4 cut(s)	146, 1160, 1755, 1792
BseRI	GAGGAG	7 cut(s)	50, 378, 766, 1643, 1691, 1742, 1914
BseSI	GKGCMC	2 cut(s)	1746, 2074
BseXI	GCAGC	6 cut(s)	134, 478, 901, 1385, 1388, 1904
BshFI	GGCC	1 cut(s)	426
BsiHKAI	GWGCWC	3 cut(s)	168, 1746, 1985
BsiSI	CCGG	2 cut(s)	50, 607
BslFI	GGGAC	1 cut(s)	2170
BslI	CCNNNNNNNGG	1 cut(s)	1291
BsmAI	GTCTC	5 cut(s)	21, 250, 292, 1286, 1415
BsmBI	CGTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	2170
BsmI	GAATGC	1 cut(s)	881
BsnI	GGCC	1 cut(s)	426
Bsp119I	TTCGAA	1 cut(s)	2202
Bsp1286I	GDGCHC	4 cut(s)	168, 1746, 1985, 2074
Bsp1407I	TGTACA	1 cut(s)	2190
Bsp143I	GATC	9 cut(s)	3, 1234, 1357, 1585, 1633, 1639, 1663, 1810, 2041
Bsp1720I	GCTNAGC	2 cut(s)	602, 1580
Bsp19I	CCATGG	1 cut(s)	2142
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	8 cut(s)	336, 594, 692, 1065, 1156, 1180, 1530, 1999
BspMAI	CTGCAG	1 cut(s)	1894
BspPI	GGATC	5 cut(s)	1229, 1580, 1634, 1641, 1818
BspT104I	TTCGAA	1 cut(s)	2202
BsrDI	GCAATG	1 cut(s)	920
BsrGI	TGTACA	1 cut(s)	2190
BsrI	ACTGG	4 cut(s)	146, 1160, 1755, 1792
BssECI	CCNNGG	2 cut(s)	968, 2142
BssMI	GATC	9 cut(s)	3, 1234, 1357, 1585, 1633, 1639, 1663, 1810, 2041
BssNAI	GTATAC	1 cut(s)	1797
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	2142
Bst1107I	GTATAC	1 cut(s)	1797
Bst2UI	CCWGG	4 cut(s)	1028, 1373, 1410, 1644
Bst4CI	ACNGT	8 cut(s)	116, 224, 257, 263, 406, 1053, 1426, 1952
Bst6I	CTCTTC	2 cut(s)	1551, 1862
BstACI	GRCGYC	1 cut(s)	186
BstAUI	TGTACA	1 cut(s)	2190
BstBAI	YACGTR	1 cut(s)	2098
BstBI	TTCGAA	1 cut(s)	2202
BstC8I	GCNNGC	1 cut(s)	1742
BstDSI	CCRYGG	2 cut(s)	968, 2142
BstF5I	GGATG	4 cut(s)	615, 1405, 1918, 2174
BstKTI	GATC	9 cut(s)	6, 1237, 1360, 1588, 1636, 1642, 1666, 1813, 2044
BstMAI	GTCTC	5 cut(s)	21, 250, 292, 1286, 1415
BstMBI	GATC	9 cut(s)	3, 1234, 1357, 1585, 1633, 1639, 1663, 1810, 2041
BstMWI	GCNNNNNNNGC	5 cut(s)	491, 665, 1270, 2063, 2144
BstNI	CCWGG	4 cut(s)	1028, 1373, 1410, 1644
BstNSI	RCATGY	3 cut(s)	955, 980, 1256
BstPAI	GACNNNNGTC	1 cut(s)	255
BstSCI	CCNGG	4 cut(s)	1026, 1371, 1408, 1642
BstSFI	CTRYAG	2 cut(s)	1890, 1963
BstSLI	GKGCMC	2 cut(s)	1746, 2074
BstV1I	GCAGC	6 cut(s)	134, 478, 901, 1385, 1388, 1904
BstV2I	GAAGAC	4 cut(s)	282, 560, 842, 1311
BstX2I	RGATCY	4 cut(s)	1234, 1633, 1639, 2041
BstXI	CCANNNNNNTGG	1 cut(s)	434
BstYI	RGATCY	4 cut(s)	1234, 1633, 1639, 2041
BstZ17I	GTATAC	1 cut(s)	1797
BsuRI	GGCC	1 cut(s)	426
BtgI	CCRYGG	2 cut(s)	968, 2142
BtrI	CACGTC	1 cut(s)	272
BtsCI	GGATG	4 cut(s)	615, 1405, 1918, 2174
BtsIMutI	CAGTG	2 cut(s)	411, 1762
Cac8I	GCNNGC	1 cut(s)	1742
CaiI	CAGNNNCTG	2 cut(s)	1401, 2057
CseI	GACGC	3 cut(s)	131, 194, 196
Csp6I	GTAC	3 cut(s)	65, 786, 2191
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviQI	GTAC	3 cut(s)	65, 786, 2191
DpnI	GATC	9 cut(s)	5, 1236, 1359, 1587, 1635, 1641, 1665, 1812, 2043
DpnII	GATC	9 cut(s)	3, 1234, 1357, 1585, 1633, 1639, 1663, 1810, 2041
DraIII	CACNNNGTG	1 cut(s)	2078
DriI	GACNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	2 cut(s)	1551, 1862
Eam1105I	GACNNNNNGTC	1 cut(s)	13
EarI	CTCTTC	2 cut(s)	1551, 1862
EciI	GGCGGA	1 cut(s)	41
Ecl136II	GAGCTC	2 cut(s)	166, 1983
Eco130I	CCWWGG	1 cut(s)	2142
Eco24I	GRGCYC	2 cut(s)	168, 1985
Eco32I	GATATC	1 cut(s)	985
Eco53kI	GAGCTC	2 cut(s)	166, 1983
Eco72I	CACGTG	1 cut(s)	2098
EcoICRI	GAGCTC	2 cut(s)	166, 1983
EcoRII	CCWGG	4 cut(s)	1026, 1371, 1408, 1642
EcoRV	GATATC	1 cut(s)	985
EcoT14I	CCWWGG	1 cut(s)	2142
EcoT22I	ATGCAT	1 cut(s)	1920
EcoT38I	GRGCYC	2 cut(s)	168, 1985
ErhI	CCWWGG	1 cut(s)	2142
Esp3I	CGTCTC	1 cut(s)	21
FalI	AAGNNNNNCTT	2 cut(s)	1859, 1891
FaqI	GGGAC	1 cut(s)	2170
FauNDI	CATATG	1 cut(s)	1441
FblI	GTMKAC	2 cut(s)	948, 1796
Fnu4HI	GCNGC	6 cut(s)	123, 492, 915, 1399, 1402, 1893
FokI	GGATG	4 cut(s)	622, 1392, 1905, 2161
FriOI	GRGCYC	2 cut(s)	168, 1985
Fsp4HI	GCNGC	6 cut(s)	123, 492, 915, 1399, 1402, 1893
FspBI	CTAG	7 cut(s)	378, 546, 1092, 1299, 1365, 1499, 1637
GluI	GCNGC	6 cut(s)	123, 492, 915, 1399, 1402, 1893
GsuI	CTGGAG	4 cut(s)	1143, 1407, 1439, 1738
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	2 cut(s)	50, 607
HgaI	GACGC	3 cut(s)	131, 194, 196
Hin1I	GRCGYC	1 cut(s)	186
HincII	GTYRAC	3 cut(s)	112, 1137, 1393
HindII	GTYRAC	3 cut(s)	112, 1137, 1393
HpaI	GTTAAC	1 cut(s)	1137
HpaII	CCGG	2 cut(s)	50, 607
HphI	GGTGA	7 cut(s)	140, 681, 986, 1228, 1522, 1958, 1988
Hpy166II	GTNNAC	8 cut(s)	112, 676, 949, 1137, 1207, 1393, 1744, 1797
Hpy188III	TCNNGA	7 cut(s)	1103, 1179, 1637, 1820, 1988, 2033, 2125
Hpy8I	GTNNAC	8 cut(s)	112, 676, 949, 1137, 1207, 1393, 1744, 1797
Hpy99I	CGWCG	9 cut(s)	11, 58, 61, 188, 212, 254, 257, 1554, 2018
HpyAV	CCTTC	5 cut(s)	543, 702, 1028, 1185, 1239
HpyCH4III	ACNGT	8 cut(s)	116, 224, 257, 263, 406, 1053, 1426, 1952
HpyCH4IV	ACGT	6 cut(s)	271, 1097, 1133, 2013, 2077, 2097
HpyCH4V	TGCA	8 cut(s)	737, 917, 1264, 1437, 1744, 1760, 1892, 1918
HpyF10VI	GCNNNNNNNGC	5 cut(s)	491, 665, 1270, 2063, 2144
HpySE526I	ACGT	6 cut(s)	271, 1097, 1133, 2013, 2077, 2097
Hsp92I	GRCGYC	1 cut(s)	186
KspAI	GTTAAC	1 cut(s)	1137
Kzo9I	GATC	9 cut(s)	3, 1234, 1357, 1585, 1633, 1639, 1663, 1810, 2041
LmnI	GCTCC	2 cut(s)	469, 656
Lsp1109I	GCAGC	6 cut(s)	134, 478, 901, 1385, 1388, 1904
LweI	GCATC	5 cut(s)	941, 1927, 2044, 2183, 2198
MaeI	CTAG	7 cut(s)	378, 546, 1092, 1299, 1365, 1499, 1637
MaeII	ACGT	6 cut(s)	271, 1097, 1133, 2013, 2077, 2097
MaeIII	GTNAC	8 cut(s)	257, 400, 406, 687, 770, 1248, 1946, 2009
MalI	GATC	9 cut(s)	5, 1236, 1359, 1587, 1635, 1641, 1665, 1812, 2043
MboI	GATC	9 cut(s)	3, 1234, 1357, 1585, 1633, 1639, 1663, 1810, 2041
MflI	RGATCY	4 cut(s)	1234, 1633, 1639, 2041
MhlI	GDGCHC	4 cut(s)	168, 1746, 1985, 2074
MlyI	GAGTC	2 cut(s)	767, 1745
MmeI	TCCRAC	3 cut(s)	273, 1426, 2116
Mph1103I	ATGCAT	1 cut(s)	1920
MroXI	GAANNNNTTC	3 cut(s)	527, 1122, 1225
MseI	TTAA	5 cut(s)	663, 858, 887, 1136, 1566
MspA1I	CMGCKG	4 cut(s)	125, 155, 1241, 1398
MspI	CCGG	2 cut(s)	50, 607
MspR9I	CCNGG	4 cut(s)	1028, 1373, 1410, 1644
Mva1269I	GAATGC	1 cut(s)	881
MvaI	CCWGG	4 cut(s)	1028, 1373, 1410, 1644
MwoI	GCNNNNNNNGC	5 cut(s)	491, 665, 1270, 2063, 2144
NcoI	CCATGG	1 cut(s)	2142
NdeI	CATATG	1 cut(s)	1441
NdeII	GATC	9 cut(s)	3, 1234, 1357, 1585, 1633, 1639, 1663, 1810, 2041
NmuCI	GTSAC	5 cut(s)	257, 406, 687, 770, 1946
NsiI	ATGCAT	1 cut(s)	1920
NspI	RCATGY	3 cut(s)	955, 980, 1256
NspV	TTCGAA	1 cut(s)	2202
PciI	ACATGT	2 cut(s)	951, 976
PcsI	WCGNNNNNNNCGW	2 cut(s)	65, 588
PctI	GAATGC	1 cut(s)	881
PdmI	GAANNNNTTC	3 cut(s)	527, 1122, 1225
PfoI	TCCNGGA	2 cut(s)	1371, 1642
PkrI	GCNGC	6 cut(s)	124, 493, 916, 1400, 1403, 1894
PleI	GAGTC	2 cut(s)	767, 1745
PmaCI	CACGTG	1 cut(s)	2098
PmlI	CACGTG	1 cut(s)	2098
PpsI	GAGTC	2 cut(s)	767, 1745
Ppu21I	YACGTR	1 cut(s)	2098
PscI	ACATGT	2 cut(s)	951, 976
PshAI	GACNNNNGTC	1 cut(s)	255
PshBI	ATTAAT	1 cut(s)	858
Psp124BI	GAGCTC	2 cut(s)	168, 1985
Psp6I	CCWGG	4 cut(s)	1026, 1371, 1408, 1642
PspCI	CACGTG	1 cut(s)	2098
PspGI	CCWGG	4 cut(s)	1026, 1371, 1408, 1642
PstI	CTGCAG	1 cut(s)	1894
PstNI	CAGNNNCTG	2 cut(s)	1401, 2057
PsuI	RGATCY	4 cut(s)	1234, 1633, 1639, 2041
PvuII	CAGCTG	4 cut(s)	125, 155, 1241, 1398
RsaI	GTAC	3 cut(s)	66, 787, 2192
RsaNI	GTAC	3 cut(s)	65, 786, 2191
SacI	GAGCTC	2 cut(s)	168, 1985
SaqAI	TTAA	5 cut(s)	663, 858, 887, 1136, 1566
SatI	GCNGC	6 cut(s)	123, 492, 915, 1399, 1402, 1893
Sau3AI	GATC	9 cut(s)	3, 1234, 1357, 1585, 1633, 1639, 1663, 1810, 2041
SchI	GAGTC	2 cut(s)	767, 1745
ScrFI	CCNGG	4 cut(s)	1028, 1373, 1410, 1644
SduI	GDGCHC	4 cut(s)	168, 1746, 1985, 2074
SfaNI	GCATC	5 cut(s)	941, 1927, 2044, 2183, 2198
SfcI	CTRYAG	2 cut(s)	1890, 1963
SfuI	TTCGAA	1 cut(s)	2202
SmlI	CTYRAG	1 cut(s)	1703
SmoI	CTYRAG	1 cut(s)	1703
SsiI	CCGC	1 cut(s)	26
SspI	AATATT	1 cut(s)	991
SspMI	CTAG	7 cut(s)	378, 546, 1092, 1299, 1365, 1499, 1637
SstI	GAGCTC	2 cut(s)	168, 1985
StyD4I	CCNGG	4 cut(s)	1026, 1371, 1408, 1642
StyI	CCWWGG	1 cut(s)	2142
TaaI	ACNGT	8 cut(s)	116, 224, 257, 263, 406, 1053, 1426, 1952
TaiI	ACGT	6 cut(s)	274, 1100, 1136, 2016, 2080, 2100
TaqI	TCGA	7 cut(s)	6, 183, 311, 646, 1788, 2016, 2202
TatI	WGTACW	2 cut(s)	785, 2190
Tru1I	TTAA	5 cut(s)	663, 858, 887, 1136, 1566
Tru9I	TTAA	5 cut(s)	663, 858, 887, 1136, 1566
TscAI	CASTG	2 cut(s)	411, 1762
TseFI	GTSAC	5 cut(s)	257, 406, 687, 770, 1946
TseI	GCWGC	6 cut(s)	122, 491, 914, 1398, 1401, 1892
Tsp45I	GTSAC	5 cut(s)	257, 406, 687, 770, 1946
TspDTI	ATGAA	8 cut(s)	422, 489, 608, 764, 796, 844, 1218, 1703
TspGWI	ACGGA	1 cut(s)	2097
TspRI	CASTG	2 cut(s)	411, 1762
VneI	GTGCAC	1 cut(s)	1742
VspI	ATTAAT	1 cut(s)	858
XapI	RAATTY	4 cut(s)	523, 565, 1762, 1823
XbaI	TCTAGA	1 cut(s)	1636
XceI	RCATGY	3 cut(s)	955, 980, 1256
XmiI	GTMKAC	2 cut(s)	948, 1796
XmnI	GAANNNNTTC	3 cut(s)	527, 1122, 1225
XspI	CTAG	7 cut(s)	378, 546, 1092, 1299, 1365, 1499, 1637
Zsp2I	ATGCAT	1 cut(s)	1920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.