Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Forward (+)

41498231 .. 41508863

Gene Structure 10633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG348200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2187 bp

ATGGAAGAAGAAGAAGAGCAAGTGGCGACGGAGCCTCCCAAAATTCACCGCCTAGACGAGTCCGTAGTGAACCGAATTGCCGCCGGTGAGGTCATCCAACGCCCTGTCTCGGCCGTCAAGGAGCTCGTCGAGAACAGCCTCGACGCCCACTCCTCCTCCATTAACGTCGTCATCAAGGACGGCGGCCTCAAACTCATCCAAGTCTCCGACGACGGCCACGGAATCCGATATGAGGACTTGCCGATACTGTGCGAGCGGCATACGACGTCGAAATTGTCGTCGTTTGAAGACCTGCAGTCCATAAAGTCGATGGGGTTTCGAGGAGAAGCTCTTGCGAGCATGACGTATGTGGCTCATGTGACGGTGACGACGATCACCAAAGGGCAGTTGCATGGTTACAGGGTTTCTTATAAAGATGGAGTGATGGAGAATGAGCCGAAGGCGTGTGCTGCCGTAAAAGGAACTCAGATAATGATTGAGAACTTATTCTATAACATGTCTGCCCGGAGAAAGAATCTGCAAAACGCTGCTGATGATTATTCAAAGATTGTAGATTTGTTAAGCCGGTTTGCCATTCATCACACAAGTGTTAGCTTCTCCTGCAGAAAGCATGGAGCTGGTAGAGCAGATGTTAGTTCTGTTGCCACAATATCAAGAATTGATGCGATTCGTTCAGTTTACGGGGTGTCAGTTGCCCGCAGTCTGATGAAAGTAGAAGCTTTGGACAATGATCCGTCAAGCTCAGTTTTCCAGATGGATGGCTTTATCTCCAATTCTGAATATGTTGCGAAGAAGATAACTATGGTGCTTTTTATAAACGATAGATTGGTGGATTGCACTGCATTGAAGAGAGCTCTAGAAATTGTTTATGCCGCTACATTGCCGAAAGCAGCAAAACCCTTCATATACATGTCAATTGTATTACCACCTGAACATGTTGATGTGAATGTTCACCCAACAAAGAGAGAGGTGAGTCTTCTGAATCAGGAAGTCATCATTGAGAAGATACAGTCAGTGGTTGAATCAAGATTGAGAAGCTCCAATGAGACACAGATATTTCAGGAGCAGACAGTTGAACCACCTTCTTCCAGCCAAATGATTTCTAGCAAGGATTCAAATCGTAATCCTACGCCATCTGGGTCAAAATCACAAAAGGTTCCAGTGAATAAAATGGTCAGAACAGATTCATCGGATCCTGCTGGAAGGTTGCATATTTACTTGCACGCAGAGTCTCGTGGCCATCTTGAAAAGAATACTAGCTTGACTGCTGTTAGATCGTCTGTTAGACAAAGAAGGAACCCAAAGGAAACTGCTGATCTGAGTAGCGTTCAGGAGCTTATTGCTGATATTGATAGCAATTGTCATTCTGGTATGCTAGACATTGTGAGACGCTGCACATACATTGGAATGGCAGATGACGTCTTTGCATTGCTTCAGCATGACACACACCTCTACCTTGCAAATATAGTGAGCTTGAGCAAAGAGCTCATGTATCAGCAAGTTCTACGTCGATTTGCTCATTTTAATGCTATACAATTAAGTAACCCAGCCCCGCTGAAGGAGTTGATTGTGTTGGCACTGAAAGAGGGGGACACAGATCCAGAATCCACTGAGAATGATGAACTAAATGAAAAGATTGCAGAAATGAATTCAGAACTACTTAAGCAAAAGGCTGATCTACTAGAGGAGTACTTTTCCATTCACATAGATAAAGATGGAAATTTGTCCAGGCTTCCTGTCATACTTGACCAATACACACCTGACATGGATCGTGTCCCAGAATTTGCGCTTTGTTTGGGCAACGATGTTGATTGGGAAGAAGAGAAAAAATGCTTCCAAGTAATTTCAGCTGCACTTGGGAACTTTTACGCCATGCATCCTCCTATGTTACCCAACCCATCTGGTGATGGTTTGCAATTTTACCAAAAAAGGAAGTTGTTCCGGAATAATGAAGGAAGTATCTCTTGCAATACTGGTGCGGATGATATGATGACGGAGGACGAAATCGAGCATGAACTAGTTGCAGAAGCAGAGACTGCATGGGCACAGCGCGAATGGTCAATCCAGCATGTGTTGTTTCCATCAATGAGGCTCTTTTTTAAGCCACCAAATTCTATGGCTACAAATGGAACATTTGTTCGAGTTGCTTCACTAGAAAAGCTGTACAGGATTTTTGAAAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

728

Amino Acids

81.64

Weight (kDa)

5.62

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	34 - 97	5.6e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	37 - 139	6.1e-14	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	223 - 344	1.7e-28	DNA mismatch repair protein, C-terminal domain
Mlh1_C	PF16413	440 - 728	1.2e-82	DNA mismatch repair protein Mlh1 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	411, 815
AatII	GACGTC	2 cut(s)	269, 1422
Acc36I	ACCTGC	1 cut(s)	300
AccBSI	CCGCTC	1 cut(s)	256
AccII	CGCG	1 cut(s)	2052
AccIII	TCCGGA	1 cut(s)	1941
AciI	CCGC	8 cut(s)	49, 81, 183, 256, 697, 873, 1553, 1979
AclWI	GGATC	5 cut(s)	725, 1187, 1200, 1592, 1776
AcoI	YGGCCR	3 cut(s)	111, 214, 1237
AcsI	RAATTY	5 cut(s)	42, 1648, 1720, 1781, 2110
AcuI	CTGAAG	2 cut(s)	1418, 1577
AcyI	GRCGYC	3 cut(s)	144, 266, 1419
AfaI	GTAC	2 cut(s)	1691, 2165
AfiI	CCNNNNNNNGG	3 cut(s)	109, 232, 1558
AflII	CTTAAG	1 cut(s)	1661
AflIII	ACRYGT	3 cut(s)	495, 909, 934
AgsI	TTSAA	8 cut(s)	287, 543, 847, 1022, 1076, 1116, 1247, 2177
AhdI	GACNNNNNGTC	1 cut(s)	295
AhlI	ACTAGT	1 cut(s)	2017
AjnI	CCWGG	1 cut(s)	1727
AleI	CACNNNNGTG	1 cut(s)	585
AloI	GAACNNNNNNTCC	2 cut(s)	2121, 2153
Alw21I	GWGCWC	3 cut(s)	126, 856, 1488
Alw26I	GTCTC	6 cut(s)	112, 208, 1040, 1236, 1381, 2027
AlwI	GGATC	5 cut(s)	725, 1187, 1200, 1592, 1776
AlwNI	CAGNNNCTG	1 cut(s)	2036
Aor13HI	TCCGGA	1 cut(s)	1941
AoxI	GGCC	4 cut(s)	111, 184, 214, 1237
ApeKI	GCWGC	5 cut(s)	449, 527, 890, 1392, 1850
ApoI	RAATTY	5 cut(s)	42, 1648, 1720, 1781, 2110
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
Asp700I	GAANNNNTTC	3 cut(s)	485, 1183, 1937
AspLEI	GCGC	2 cut(s)	1789, 2052
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	7 cut(s)	38, 98, 367, 376, 944, 982, 1916
BaeGI	GKGCMC	1 cut(s)	2047
BalI	TGGCCA	1 cut(s)	1239
BamHI	GGATCC	1 cut(s)	1192
BanII	GRGCYC	3 cut(s)	126, 856, 1488
BauI	CACGAG	1 cut(s)	1233
BbsI	GAAGAC	2 cut(s)	294, 968
Bbv12I	GWGCWC	3 cut(s)	126, 856, 1488
BbvI	GCAGC	5 cut(s)	436, 514, 902, 1379, 1837
BceAI	ACGGC	4 cut(s)	98, 196, 229, 437
BciT130I	CCWGG	1 cut(s)	1729
BcnI	CCSGG	1 cut(s)	505
BcoDI	GTCTC	6 cut(s)	112, 208, 1040, 1236, 1381, 2027
BcuI	ACTAGT	1 cut(s)	2017
BfaI	CTAG	8 cut(s)	53, 857, 1104, 1257, 1376, 1682, 2018, 2153
BfmI	CTRYAG	2 cut(s)	293, 601
BfrI	CTTAAG	1 cut(s)	1661
BfuAI	ACCTGC	1 cut(s)	300
BisI	GCNGC	9 cut(s)	81, 184, 257, 450, 528, 873, 891, 1393, 1851
BlsI	GCNGC	9 cut(s)	82, 185, 258, 451, 529, 874, 892, 1394, 1852
BmcAI	AGTACT	1 cut(s)	1691
Bme1390I	CCNGG	2 cut(s)	505, 1729
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmiI	GGNNCC	4 cut(s)	33, 1158, 1194, 1298
BmrFI	CCNGG	2 cut(s)	505, 1729
BmsI	GCATC	3 cut(s)	652, 1885, 2171
BpiI	GAAGAC	2 cut(s)	294, 968
BpuEI	CTTGAG	1 cut(s)	1495
BpuMI	CCSGG	1 cut(s)	505
BsaBI	GATNNNNATC	1 cut(s)	1116
BsaHI	GRCGYC	3 cut(s)	144, 266, 1419
BsaJI	CCNNGG	1 cut(s)	217
BsaWI	WCCGGW	1 cut(s)	1941
BsaXI	ACNNNNNCTCC	6 cut(s)	19, 49, 134, 140, 164, 170
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 232, 1558
Bse118I	RCCGGY	2 cut(s)	83, 564
Bse1I	ACTGG	2 cut(s)	1160, 1978
Bse3DI	GCAATG	2 cut(s)	878, 1427
Bse8I	GATNNNNATC	1 cut(s)	1116
BseAI	TCCGGA	1 cut(s)	1941
BseBI	CCWGG	1 cut(s)	1729
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	5 cut(s)	93, 195, 763, 1876, 1987
BseJI	GATNNNNATC	1 cut(s)	1116
BseLI	CCNNNNNNNGG	3 cut(s)	109, 232, 1558
BseMI	GCAATG	2 cut(s)	878, 1427
BseMII	CTCAG	4 cut(s)	479, 756, 1310, 1602
BseNI	ACTGG	2 cut(s)	1160, 1978
BseRI	GAGGAG	4 cut(s)	142, 145, 336, 1700
BseSI	GKGCMC	1 cut(s)	2047
BseX3I	CGGCCG	1 cut(s)	111
BseXI	GCAGC	5 cut(s)	436, 514, 902, 1379, 1837
BseYI	CCCAGC	1 cut(s)	1546
BsgI	GTGCAG	2 cut(s)	1378, 1836
Bsh1236I	CGCG	1 cut(s)	2052
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	4 cut(s)	113, 186, 216, 1239
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	3 cut(s)	126, 856, 1488
BsiSI	CCGG	4 cut(s)	84, 505, 565, 1942
BslFI	GGGAC	2 cut(s)	1604, 1760
BslI	CCNNNNNNNGG	3 cut(s)	109, 232, 1558
BsmAI	GTCTC	6 cut(s)	112, 208, 1040, 1236, 1381, 2027
BsmBI	CGTCTC	1 cut(s)	1381
BsmFI	GGGAC	2 cut(s)	1604, 1760
BsnI	GGCC	4 cut(s)	113, 186, 216, 1239
Bsp1286I	GDGCHC	4 cut(s)	126, 856, 1488, 2047
Bsp13I	TCCGGA	1 cut(s)	1941
Bsp1407I	TGTACA	1 cut(s)	2163
Bsp143I	GATC	8 cut(s)	372, 730, 1192, 1274, 1315, 1597, 1675, 1768
BspACI	CCGC	8 cut(s)	49, 81, 183, 256, 697, 873, 1553, 1979
BspANI	GGCC	4 cut(s)	113, 186, 216, 1239
BspCNI	CTCAG	4 cut(s)	478, 755, 1311, 1603
BspEI	TCCGGA	1 cut(s)	1941
BspFNI	CGCG	1 cut(s)	2052
BspLI	GGNNCC	4 cut(s)	33, 1158, 1194, 1298
BspMAI	CTGCAG	2 cut(s)	297, 605
BspMI	ACCTGC	1 cut(s)	300
BspPI	GGATC	5 cut(s)	725, 1187, 1200, 1592, 1776
BspQI	GCTCTTC	1 cut(s)	9
BspTI	CTTAAG	1 cut(s)	1661
BsrBI	CCGCTC	1 cut(s)	256
BsrDI	GCAATG	2 cut(s)	878, 1427
BsrFI	RCCGGY	2 cut(s)	83, 564
BsrGI	TGTACA	1 cut(s)	2163
BsrI	ACTGG	2 cut(s)	1160, 1978
BssAI	RCCGGY	2 cut(s)	83, 564
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	8 cut(s)	372, 730, 1192, 1274, 1315, 1597, 1675, 1768
BssNI	GRCGYC	3 cut(s)	144, 266, 1419
BssSI	CACGAG	1 cut(s)	1233
Bst2BI	CACGAG	1 cut(s)	1233
Bst2UI	CCWGG	1 cut(s)	1729
Bst4CI	ACNGT	4 cut(s)	249, 364, 1011, 1072
Bst6I	CTCTTC	3 cut(s)	9, 842, 1815
BstACI	GRCGYC	3 cut(s)	144, 266, 1419
BstAFI	CTTAAG	1 cut(s)	1661
BstAPI	GCANNNNNTGC	1 cut(s)	2036
BstAUI	TGTACA	1 cut(s)	2163
BstC8I	GCNNGC	4 cut(s)	254, 337, 697, 1224
BstDEI	CTNAG	4 cut(s)	465, 742, 1319, 1611
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	5 cut(s)	93, 195, 763, 1876, 1987
BstFNI	CGCG	1 cut(s)	2052
BstHHI	GCGC	2 cut(s)	1789, 2052
BstKTI	GATC	8 cut(s)	375, 733, 1195, 1277, 1318, 1600, 1678, 1771
BstMAI	GTCTC	6 cut(s)	112, 208, 1040, 1236, 1381, 2027
BstMBI	GATC	8 cut(s)	372, 730, 1192, 1274, 1315, 1597, 1675, 1768
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	4 cut(s)	449, 600, 623, 2036
BstNI	CCWGG	1 cut(s)	1729
BstNSI	RCATGY	4 cut(s)	499, 913, 938, 2072
BstSCI	CCNGG	2 cut(s)	503, 1727
BstSFI	CTRYAG	2 cut(s)	293, 601
BstSLI	GKGCMC	1 cut(s)	2047
BstUI	CGCG	1 cut(s)	2052
BstV1I	GCAGC	5 cut(s)	436, 514, 902, 1379, 1837
BstV2I	GAAGAC	2 cut(s)	294, 968
BstX2I	RGATCY	2 cut(s)	1192, 1597
BstXI	CCANNNNNNTGG	1 cut(s)	758
BstYI	RGATCY	2 cut(s)	1192, 1597
BstZI	CGGCCG	1 cut(s)	111
BsuRI	GGCC	4 cut(s)	113, 186, 216, 1239
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	5 cut(s)	93, 195, 763, 1876, 1987
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	5 cut(s)	837, 1020, 1167, 1577, 1608
BveI	ACCTGC	1 cut(s)	300
Cac8I	GCNNGC	4 cut(s)	254, 337, 697, 1224
CaiI	CAGNNNCTG	1 cut(s)	2036
CfoI	GCGC	2 cut(s)	1789, 2052
Cfr10I	RCCGGY	2 cut(s)	83, 564
CseI	GACGC	2 cut(s)	152, 1398
Csp6I	GTAC	2 cut(s)	1690, 2164
CviQI	GTAC	2 cut(s)	1690, 2164
DdeI	CTNAG	4 cut(s)	465, 742, 1319, 1611
DpnI	GATC	8 cut(s)	374, 732, 1194, 1276, 1317, 1599, 1677, 1770
DpnII	GATC	8 cut(s)	372, 730, 1192, 1274, 1315, 1597, 1675, 1768
DriI	GACNNNNNGTC	1 cut(s)	295
EaeI	YGGCCR	3 cut(s)	111, 214, 1237
EagI	CGGCCG	1 cut(s)	111
Eam1104I	CTCTTC	3 cut(s)	9, 842, 1815
Eam1105I	GACNNNNNGTC	1 cut(s)	295
EarI	CTCTTC	3 cut(s)	9, 842, 1815
Ecl136II	GAGCTC	3 cut(s)	124, 854, 1486
EclXI	CGGCCG	1 cut(s)	111
Eco24I	GRGCYC	3 cut(s)	126, 856, 1488
Eco52I	CGGCCG	1 cut(s)	111
Eco53kI	GAGCTC	3 cut(s)	124, 854, 1486
Eco57I	CTGAAG	2 cut(s)	1418, 1577
EcoICRI	GAGCTC	3 cut(s)	124, 854, 1486
EcoRI	GAATTC	1 cut(s)	1648
EcoRII	CCWGG	1 cut(s)	1727
EcoT22I	ATGCAT	1 cut(s)	1878
EcoT38I	GRGCYC	3 cut(s)	126, 856, 1488
Esp3I	CGTCTC	1 cut(s)	1381
FalI	AAGNNNNNCTT	2 cut(s)	1948, 1980
FaqI	GGGAC	2 cut(s)	1604, 1760
FauI	CCCGC	2 cut(s)	704, 1560
Fnu4HI	GCNGC	9 cut(s)	81, 184, 257, 450, 528, 873, 891, 1393, 1851
FokI	GGATG	5 cut(s)	80, 182, 770, 1863, 1994
FriOI	GRGCYC	3 cut(s)	126, 856, 1488
Fsp4HI	GCNGC	9 cut(s)	81, 184, 257, 450, 528, 873, 891, 1393, 1851
FspBI	CTAG	8 cut(s)	53, 857, 1104, 1257, 1376, 1682, 2018, 2153
GlaI	GCGC	2 cut(s)	1788, 2051
GluI	GCNGC	9 cut(s)	81, 184, 257, 450, 528, 873, 891, 1393, 1851
GsaI	CCCAGC	1 cut(s)	1550
HaeIII	GGCC	4 cut(s)	113, 186, 216, 1239
HapII	CCGG	4 cut(s)	84, 505, 565, 1942
HgaI	GACGC	2 cut(s)	152, 1398
HhaI	GCGC	2 cut(s)	1789, 2052
Hin1I	GRCGYC	3 cut(s)	144, 266, 1419
Hin6I	GCGC	2 cut(s)	1787, 2050
HinP1I	GCGC	2 cut(s)	1787, 2050
HindIII	AAGCTT	1 cut(s)	717
HpaII	CCGG	4 cut(s)	84, 505, 565, 1942
HphI	GGTGA	7 cut(s)	38, 98, 367, 376, 944, 982, 1916
Hpy166II	GTNNAC	3 cut(s)	70, 679, 952
Hpy8I	GTNNAC	3 cut(s)	70, 679, 952
HpyAV	CCTTC	7 cut(s)	433, 910, 1092, 1197, 1287, 1552, 1946
HpyCH4III	ACNGT	4 cut(s)	249, 364, 1011, 1072
HpyCH4IV	ACGT	5 cut(s)	165, 266, 344, 1419, 1507
HpyF10VI	GCNNNNNNNGC	4 cut(s)	449, 600, 623, 2036
HpyF3I	CTNAG	4 cut(s)	465, 742, 1319, 1611
HpySE526I	ACGT	5 cut(s)	165, 266, 344, 1419, 1507
Hsp92I	GRCGYC	3 cut(s)	144, 266, 1419
HspAI	GCGC	2 cut(s)	1787, 2050
Kpn2I	TCCGGA	1 cut(s)	1941
Kzo9I	GATC	8 cut(s)	372, 730, 1192, 1274, 1315, 1597, 1675, 1768
LguI	GCTCTTC	1 cut(s)	9
LmnI	GCTCC	6 cut(s)	31, 121, 614, 1043, 1063, 1333
Lsp1109I	GCAGC	5 cut(s)	436, 514, 902, 1379, 1837
LweI	GCATC	3 cut(s)	652, 1885, 2171
MaeI	CTAG	8 cut(s)	53, 857, 1104, 1257, 1376, 1682, 2018, 2153
MaeII	ACGT	5 cut(s)	165, 266, 344, 1419, 1507
MaeIII	GTNAC	5 cut(s)	358, 364, 395, 1541, 1887
MalI	GATC	8 cut(s)	374, 732, 1194, 1276, 1317, 1599, 1677, 1770
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	8 cut(s)	372, 730, 1192, 1274, 1315, 1597, 1675, 1768
MfeI	CAATTG	2 cut(s)	915, 1357
MflI	RGATCY	2 cut(s)	1192, 1597
MhlI	GDGCHC	4 cut(s)	126, 856, 1488, 2047
MlsI	TGGCCA	1 cut(s)	1239
MluNI	TGGCCA	1 cut(s)	1239
MlyI	GAGTC	3 cut(s)	68, 982, 1238
MmeI	TCCRAC	2 cut(s)	121, 231
Mox20I	TGGCCA	1 cut(s)	1239
Mph1103I	ATGCAT	1 cut(s)	1878
MroI	TCCGGA	1 cut(s)	1941
MroXI	GAANNNNTTC	3 cut(s)	485, 1183, 1937
MscI	TGGCCA	1 cut(s)	1239
MseI	TTAA	6 cut(s)	162, 560, 1524, 1538, 1662, 2100
MslI	CAYNNNNRTG	5 cut(s)	585, 908, 939, 1406, 1524
Msp20I	TGGCCA	1 cut(s)	1239
MspA1I	CMGCKG	2 cut(s)	1555, 1850
MspCI	CTTAAG	1 cut(s)	1661
MspI	CCGG	4 cut(s)	84, 505, 565, 1942
MspR9I	CCNGG	2 cut(s)	505, 1729
MunI	CAATTG	2 cut(s)	915, 1357
MvaI	CCWGG	1 cut(s)	1729
MvnI	CGCG	1 cut(s)	2052
MwoI	GCNNNNNNNGC	4 cut(s)	449, 600, 623, 2036
NciI	CCSGG	1 cut(s)	505
NdeII	GATC	8 cut(s)	372, 730, 1192, 1274, 1315, 1597, 1675, 1768
NlaIV	GGNNCC	4 cut(s)	33, 1158, 1194, 1298
NmeAIII	GCCGAG	1 cut(s)	89
NmuCI	GTSAC	2 cut(s)	358, 364
NsiI	ATGCAT	1 cut(s)	1878
NspI	RCATGY	4 cut(s)	499, 913, 938, 2072
OliI	CACNNNNGTG	1 cut(s)	585
PciI	ACATGT	3 cut(s)	495, 909, 934
PciSI	GCTCTTC	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	2 cut(s)	275, 368
PdmI	GAANNNNTTC	3 cut(s)	485, 1183, 1937
PfeI	GAWTC	8 cut(s)	222, 514, 667, 982, 1022, 1112, 1184, 1604
PkrI	GCNGC	9 cut(s)	82, 185, 258, 451, 529, 874, 892, 1394, 1852
PleI	GAGTC	3 cut(s)	67, 981, 1237
PpsI	GAGTC	3 cut(s)	67, 981, 1237
PscI	ACATGT	3 cut(s)	495, 909, 934
PsiI	TTATAA	2 cut(s)	411, 815
Psp124BI	GAGCTC	3 cut(s)	126, 856, 1488
Psp6I	CCWGG	1 cut(s)	1727
PspFI	CCCAGC	1 cut(s)	1546
PspGI	CCWGG	1 cut(s)	1727
PspN4I	GGNNCC	4 cut(s)	33, 1158, 1194, 1298
PstI	CTGCAG	2 cut(s)	297, 605
PstNI	CAGNNNCTG	1 cut(s)	2036
PsuI	RGATCY	2 cut(s)	1192, 1597
PvuII	CAGCTG	1 cut(s)	1850
RsaI	GTAC	2 cut(s)	1691, 2165
RsaNI	GTAC	2 cut(s)	1690, 2164
RseI	CAYNNNNRTG	5 cut(s)	585, 908, 939, 1406, 1524
SacI	GAGCTC	3 cut(s)	126, 856, 1488
SapI	GCTCTTC	1 cut(s)	9
SaqAI	TTAA	6 cut(s)	162, 560, 1524, 1538, 1662, 2100
SatI	GCNGC	9 cut(s)	81, 184, 257, 450, 528, 873, 891, 1393, 1851
Sau3AI	GATC	8 cut(s)	372, 730, 1192, 1274, 1315, 1597, 1675, 1768
ScaI	AGTACT	1 cut(s)	1691
SchI	GAGTC	3 cut(s)	68, 982, 1238
ScrFI	CCNGG	2 cut(s)	505, 1729
SduI	GDGCHC	4 cut(s)	126, 856, 1488, 2047
SfaNI	GCATC	3 cut(s)	652, 1885, 2171
SfcI	CTRYAG	2 cut(s)	293, 601
SgrAI	CRCCGGYG	1 cut(s)	83
SmiMI	CAYNNNNRTG	5 cut(s)	585, 908, 939, 1406, 1524
SmlI	CTYRAG	2 cut(s)	1474, 1661
SmoI	CTYRAG	2 cut(s)	1474, 1661
SpeI	ACTAGT	1 cut(s)	2017
SsiI	CCGC	8 cut(s)	49, 81, 183, 256, 697, 873, 1553, 1979
SspMI	CTAG	8 cut(s)	53, 857, 1104, 1257, 1376, 1682, 2018, 2153
SstI	GAGCTC	3 cut(s)	126, 856, 1488
StyD4I	CCNGG	2 cut(s)	503, 1727
TaaI	ACNGT	4 cut(s)	249, 364, 1011, 1072
TaiI	ACGT	5 cut(s)	168, 269, 347, 1422, 1510
TaqI	TCGA	8 cut(s)	129, 141, 269, 308, 319, 1510, 2007, 2140
TatI	WGTACW	2 cut(s)	1689, 2163
TauI	GCSGC	4 cut(s)	83, 186, 259, 875
TfiI	GAWTC	8 cut(s)	222, 514, 667, 982, 1022, 1112, 1184, 1604
Tru1I	TTAA	6 cut(s)	162, 560, 1524, 1538, 1662, 2100
Tru9I	TTAA	6 cut(s)	162, 560, 1524, 1538, 1662, 2100
TscAI	CASTG	5 cut(s)	844, 1020, 1167, 1584, 1615
TseFI	GTSAC	2 cut(s)	358, 364
TseI	GCWGC	5 cut(s)	449, 527, 890, 1392, 1850
Tsp45I	GTSAC	2 cut(s)	358, 364
TspDTI	ATGAA	9 cut(s)	566, 722, 892, 1176, 1635, 1644, 1661, 1965, 2028
TspGWI	ACGGA	5 cut(s)	44, 52, 234, 723, 2009
TspRI	CASTG	5 cut(s)	844, 1020, 1167, 1584, 1615
Vha464I	CTTAAG	1 cut(s)	1661
XapI	RAATTY	5 cut(s)	42, 1648, 1720, 1781, 2110
XbaI	TCTAGA	1 cut(s)	856
XceI	RCATGY	4 cut(s)	499, 913, 938, 2072
XcmI	CCANNNNNNNNNTGG	1 cut(s)	307
XmnI	GAANNNNTTC	3 cut(s)	485, 1183, 1937
XspI	CTAG	8 cut(s)	53, 857, 1104, 1257, 1376, 1682, 2018, 2153
ZraI	GACGTC	2 cut(s)	267, 1420
ZrmI	AGTACT	1 cut(s)	1691
Zsp2I	ATGCAT	1 cut(s)	1878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.