Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Reverse (-)

3036149 .. 3036376

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1034200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGACTGCCCGGAGGAAGATGTTACAAAATTCTGCTGATGGTTACTCAAAGATTGTAGATTTGCTAAGCCGGTTTGCAATTCATCATATGAATGTTGGCTTCTCCCGCAGAAAGGTAGGTTGCTGTTTAACTAAGAAACTCGTCTTTCTTACTTCACCGATCTTTTTCATGGCTAGAACTAACTGCAAATTCACAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

67

Amino Acids

7.6

Weight (kDa)

10.68

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	28, 188
AfiI	CCNNNNNNNGG	1 cut(s)	112
ApoI	RAATTY	2 cut(s)	28, 188
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	147
BccI	CCATC	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	10
BfaI	CTAG	1 cut(s)	174
BlpI	GCTNAGC	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	10
Bpu1102I	GCTNAGC	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	10, 70
BslI	CCNNNNNNNGG	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	159
Bsp1720I	GCTNAGC	1 cut(s)	65
BspACI	CCGC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	69
BssMI	GATC	1 cut(s)	159
BstDEI	CTNAG	2 cut(s)	65, 132
BstKTI	GATC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	8
Cfr10I	RCCGGY	1 cut(s)	69
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	3 cut(s)	69, 99, 173
CviKI_1	RGCY	3 cut(s)	69, 99, 173
DdeI	CTNAG	2 cut(s)	65, 132
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
FaeI	CATG	1 cut(s)	172
FaiI	YATR	3 cut(s)	87, 89, 170
FatI	CATG	1 cut(s)	168
FauI	CCCGC	1 cut(s)	113
FauNDI	CATATG	1 cut(s)	87
FspBI	CTAG	1 cut(s)	174
HapII	CCGG	2 cut(s)	10, 70
Hin1II	CATG	1 cut(s)	172
HpaII	CCGG	2 cut(s)	10, 70
HphI	GGTGA	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	77, 186
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	65, 132
Hsp92II	CATG	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	159
LpnPI	CCDG	2 cut(s)	23, 83
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	21, 41
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	1 cut(s)	28
MluCI	AATT	4 cut(s)	28, 78, 188, 196
MnlI	CCTC	1 cut(s)	6
MseI	TTAA	2 cut(s)	128, 199
MslI	CAYNNNNRTG	1 cut(s)	90
MspI	CCGG	2 cut(s)	10, 70
MspR9I	CCNGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	1 cut(s)	10
NdeI	CATATG	1 cut(s)	87
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	128, 199
Sau3AI	GATC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	2 cut(s)	117, 121
SgeI	CNNG	7 cut(s)	21, 22, 82, 117, 152, 181, 186
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	4 cut(s)	28, 78, 188, 196
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	8
TasI	AATT	4 cut(s)	28, 78, 188, 196
Tru1I	TTAA	2 cut(s)	128, 199
Tru9I	TTAA	2 cut(s)	128, 199
TspDTI	ATGAA	3 cut(s)	71, 104, 157
XapI	RAATTY	2 cut(s)	28, 188
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.