Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Reverse (-)

47472243 .. 47483422

Gene Structure 11180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAAGAAGAAGAAGAAGAGCAAGTGGCGACGGAGCCTCCCAAAATTCACCGCCTAGACGAGTCCGTAGTGAACCGAATCGCCGCCGGTGAGGTCATCCAATGCCCCGTCTCCGCCGTCAAGGAGCTCGTCGAGAACAGCCTCGACGCCCACTCCTCCTCCATTAACGTCGTCGTCAAGGACGGCGGCCTCAAGCTCATCCAAGTCTCCGACGACGGCCACGGAATCCGAATTGAGAACTTATTCTATAACATGTCTGCCCGGAGAAAGAATCTGCAAAACTCTGCTGATGATTATTCAAAGATTGTAGATTTGTTAAGCCGGTTTGCCATTCATCACACAAGTGTAAAAGTGTTAGCTTCTCCTGCAGAAAGTCTGGGAGTTCATCTTATGTCGGGGTTGGATGAAAATGAAGAATCCATCACACAAATTGGGGATTTGAAACTGCCAATATGGCCTTATGAGTTGGGTTCTGCAGCAGCTTCTGATTTTGTCCACATAGGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

169

Amino Acids

18.44

Weight (kDa)

4.76

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	38 - 99	3e-10	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	52, 84, 114, 186
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	147
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	300, 442
AleI	CACNNNNGTG	1 cut(s)	342
AluBI	AGCT	4 cut(s)	127, 196, 359, 482
AluI	AGCT	4 cut(s)	127, 196, 359, 482
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	2 cut(s)	115, 211
AlwNI	CAGNNNCTG	1 cut(s)	485
AoxI	GGCC	3 cut(s)	187, 217, 455
ApeKI	GCWGC	2 cut(s)	476, 479
ApoI	RAATTY	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	242
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	2 cut(s)	41, 101
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	488, 491
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	3 cut(s)	101, 199, 232
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	2 cut(s)	115, 211
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	2 cut(s)	366, 474
BglI	GCCNNNNNGGC	1 cut(s)	454
BisI	GCNGC	4 cut(s)	84, 187, 477, 480
BlsI	GCNGC	4 cut(s)	85, 188, 478, 481
Bme1390I	CCNGG	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	262
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	6 cut(s)	22, 52, 137, 143, 167, 173
Bse118I	RCCGGY	2 cut(s)	86, 321
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	3 cut(s)	96, 198, 409
BseRI	GAGGAG	2 cut(s)	145, 148
BseXI	GCAGC	2 cut(s)	488, 491
BshFI	GGCC	3 cut(s)	189, 219, 457
BsiHKAI	GWGCWC	1 cut(s)	129
BsiSI	CCGG	3 cut(s)	87, 262, 322
BsmAI	GTCTC	2 cut(s)	115, 211
BsmBI	CGTCTC	1 cut(s)	115
BsnI	GGCC	3 cut(s)	189, 219, 457
Bsp1286I	GDGCHC	1 cut(s)	129
BspACI	CCGC	4 cut(s)	52, 84, 114, 186
BspANI	GGCC	3 cut(s)	189, 219, 457
BspLI	GGNNCC	1 cut(s)	36
BspMAI	CTGCAG	2 cut(s)	370, 478
BspQI	GCTCTTC	1 cut(s)	12
BsrFI	RCCGGY	2 cut(s)	86, 321
BssAI	RCCGGY	2 cut(s)	86, 321
BssECI	CCNNGG	1 cut(s)	220
BssNI	GRCGYC	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	3 cut(s)	96, 198, 409
BstMAI	GTCTC	2 cut(s)	115, 211
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 454
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	260
BstSFI	CTRYAG	2 cut(s)	366, 474
BstV1I	GCAGC	2 cut(s)	488, 491
BsuRI	GGCC	3 cut(s)	189, 219, 457
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	96, 198, 409
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr10I	RCCGGY	2 cut(s)	86, 321
CseI	GACGC	1 cut(s)	155
CviAII	CATG	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	1 cut(s)	256
FaiI	YATR	6 cut(s)	249, 254, 392, 454, 462, 500
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	4 cut(s)	84, 187, 477, 480
FokI	GGATG	3 cut(s)	83, 185, 416
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	4 cut(s)	84, 187, 477, 480
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	4 cut(s)	84, 187, 477, 480
HaeIII	GGCC	3 cut(s)	189, 219, 457
HapII	CCGG	3 cut(s)	87, 262, 322
HgaI	GACGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	5 cut(s)	62, 78, 225, 271, 416
HpaII	CCGG	3 cut(s)	87, 262, 322
HphI	GGTGA	2 cut(s)	41, 101
Hpy166II	GTNNAC	2 cut(s)	73, 496
Hpy188I	TCNGA	3 cut(s)	211, 230, 487
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	2 cut(s)	73, 496
Hpy99I	CGWCG	7 cut(s)	34, 134, 149, 173, 176, 215, 218
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	3 cut(s)	277, 368, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 454
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	256
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	34, 124
LpnPI	CCDG	5 cut(s)	100, 275, 335, 362, 378
Lsp1109I	GCAGC	2 cut(s)	488, 491
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	168
MboII	GAAGA	6 cut(s)	17, 20, 23, 26, 29, 425
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	3 cut(s)	45, 231, 429
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	2 cut(s)	234, 381
MnlI	CCTC	7 cut(s)	48, 85, 152, 166, 169, 200, 497
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	2 cut(s)	165, 317
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	3 cut(s)	87, 262, 322
MspR9I	CCNGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	365, 454
NciI	CCSGG	1 cut(s)	262
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	36
NspI	RCATGY	1 cut(s)	256
OliI	CACNNNNGTG	1 cut(s)	342
PciI	ACATGT	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	242
PfeI	GAWTC	4 cut(s)	78, 225, 271, 416
PkrI	GCNGC	4 cut(s)	85, 188, 478, 481
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PscI	ACATGT	1 cut(s)	252
Psp124BI	GAGCTC	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	36
PstI	CTGCAG	2 cut(s)	370, 478
PstNI	CAGNNNCTG	1 cut(s)	485
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	165, 317
SatI	GCNGC	4 cut(s)	84, 187, 477, 480
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	7 cut(s)	96, 129, 171, 198, 361, 484, 508
SfcI	CTRYAG	2 cut(s)	366, 474
SgrAI	CRCCGGYG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	45, 231, 429
SsiI	CCGC	4 cut(s)	52, 84, 114, 186
SspMI	CTAG	1 cut(s)	56
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	260
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	132, 144
TasI	AATT	3 cut(s)	45, 231, 429
TauI	GCSGC	2 cut(s)	86, 189
TfiI	GAWTC	4 cut(s)	78, 225, 271, 416
Tru1I	TTAA	2 cut(s)	165, 317
Tru9I	TTAA	2 cut(s)	165, 317
TseI	GCWGC	2 cut(s)	476, 479
TspDTI	ATGAA	4 cut(s)	323, 374, 420, 426
TspGWI	ACGGA	3 cut(s)	47, 55, 237
XapI	RAATTY	1 cut(s)	45
XceI	RCATGY	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.