Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8507019.1

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Forward (+)

2674 .. 3045

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8507019.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atggaaggagaagagcgagtggcgacggagcctcccaaaattcaccgcctagacgagtccgtagtgaaccgaatcgccgccggtgaggtcatccaacgccccgtctctgccgtcaaggagctcgtcgagaacagcctcgacgcccactcctcctccattaacgtcgtcgtcaaggacggcggcctcaagctcatccaagtctccgacgacggccacggaatccgatctgctgtagtaggaggacttgccgataatgtgcgagcggcatacgacgtcgaaattgtcgtcgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

97

Amino Acids

10.29

Weight (kDa)

4.9

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	276
AccBSI	CCGCTC	1 cut(s)	263
AciI	CCGC	4 cut(s)	46, 78, 180, 263
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	39
AcyI	GRCGYC	2 cut(s)	141, 273
AluBI	AGCT	2 cut(s)	121, 190
AluI	AGCT	2 cut(s)	121, 190
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	2 cut(s)	109, 205
AoxI	GGCC	2 cut(s)	181, 211
ApoI	RAATTY	1 cut(s)	39
ArsI	GACNNNNNNTTYG	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	35, 95
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	123
BceAI	ACGGC	3 cut(s)	95, 193, 226
BcoDI	GTCTC	2 cut(s)	109, 205
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	3 cut(s)	78, 181, 264
BlsI	GCNGC	3 cut(s)	79, 182, 265
BmiI	GGNNCC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	170
BsaHI	GRCGYC	2 cut(s)	141, 273
BsaJI	CCNNGG	1 cut(s)	214
BsaXI	ACNNNNNCTCC	6 cut(s)	16, 46, 131, 137, 161, 167
Bse118I	RCCGGY	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	2 cut(s)	90, 192
BseRI	GAGGAG	2 cut(s)	139, 142
BshFI	GGCC	2 cut(s)	183, 213
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	109, 205
BsmBI	CGTCTC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	183, 213
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	224
BspACI	CCGC	4 cut(s)	46, 78, 180, 263
BspANI	GGCC	2 cut(s)	183, 213
BspLI	GGNNCC	1 cut(s)	30
BspQI	GCTCTTC	1 cut(s)	6
BsrBI	CCGCTC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	224
BssNI	GRCGYC	2 cut(s)	141, 273
Bst6I	CTCTTC	1 cut(s)	6
BstACI	GRCGYC	2 cut(s)	141, 273
BstC8I	GCNNGC	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	90, 192
BstKTI	GATC	1 cut(s)	227
BstMAI	GTCTC	2 cut(s)	109, 205
BstMBI	GATC	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	183, 213
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	90, 192
Cac8I	GCNNGC	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	80
CseI	GACGC	1 cut(s)	149
CviJI	RGCY	6 cut(s)	31, 121, 135, 183, 190, 213
CviKI_1	RGCY	6 cut(s)	31, 121, 135, 183, 190, 213
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	121
EcoICRI	GAGCTC	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	123
Esp3I	CGTCTC	1 cut(s)	109
FaiI	YATR	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	78, 181, 264
FokI	GGATG	2 cut(s)	77, 179
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	3 cut(s)	78, 181, 264
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	3 cut(s)	78, 181, 264
HaeIII	GGCC	2 cut(s)	183, 213
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	149
Hin1I	GRCGYC	2 cut(s)	141, 273
HinfI	GANTC	3 cut(s)	56, 72, 219
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	2 cut(s)	35, 95
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	205, 224
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	67
HpyCH4IV	ACGT	2 cut(s)	162, 273
HpySE526I	ACGT	2 cut(s)	162, 273
Hsp92I	GRCGYC	2 cut(s)	141, 273
Kzo9I	GATC	1 cut(s)	224
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	2 cut(s)	28, 118
LpnPI	CCDG	1 cut(s)	94
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	2 cut(s)	162, 273
MalI	GATC	1 cut(s)	226
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	1 cut(s)	224
MboII	GAAGA	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	2 cut(s)	39, 279
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	118, 228
MnlI	CCTC	7 cut(s)	42, 79, 146, 160, 163, 194, 233
MseI	TTAA	1 cut(s)	159
MspI	CCGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	72, 219
PkrI	GCNGC	3 cut(s)	79, 182, 265
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp124BI	GAGCTC	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	123
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	3 cut(s)	78, 181, 264
Sau3AI	GATC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	5 cut(s)	90, 123, 165, 192, 276
SfcI	CTRYAG	1 cut(s)	231
SgrAI	CRCCGGYG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	39, 279
SsiI	CCGC	4 cut(s)	46, 78, 180, 263
SspMI	CTAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	123
TaiI	ACGT	2 cut(s)	165, 276
TaqI	TCGA	3 cut(s)	126, 138, 276
TasI	AATT	2 cut(s)	39, 279
TauI	GCSGC	3 cut(s)	80, 183, 266
TfiI	GAWTC	2 cut(s)	72, 219
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TspGWI	ACGGA	3 cut(s)	41, 49, 231
XapI	RAATTY	1 cut(s)	39
XspI	CTAG	1 cut(s)	50
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.