Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Forward (+)

45365317 .. 45381442

Gene Structure 16126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G555900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2199 bp

ATGGAAATGGAAATTGAAGCAGAAGAAGAGCAAGTCCAGATGGAGCCGCCCAAAATTCACCGCCTAGACGATTCTGTAGTGAACCGAATCGCCGCCGGCGAGGTTATCCAACGCCCTGTCTCCGCCGTCAAAGAGCTCGTTGAGAACAGTCTCGACGCCTGCTCCTCCTCCATAAACGTCGTCGTCAAGGACGGCGGCCTCAAGCTCATCCAAGTCTCCGATGACGGCCACGGCATCCGCTATGAGGACTTGCCCATACTCTGTGAGCGGCACACGACGTCGAAATTGTCGACGTTTGAGGATTTGCAATCGATAAAGTCGATGGGGTTTAGAGGAGAAGCACTTGCGAGCATGACTTATGTAGCTCATGTTACTGTGACAACGATTACCAAGGGCCAGTTGCATGGTTATAGGGTATCTTATAAAGATGGAGTCATGGAGCACGAACCAAAGGCGTGCGCTGCTGTAAAAGGAACTCAGATAATGGTTGAAAATTTATTCTATAACATGACTGCTCGGAGGAAGACACTGCAAAATTCTGCTGATGATTATTCAAAGATTGTAGATGTGTTAAGCCGGTTTGCCATTCATCATATGAATGTTAGCTTCTCCTGCAGAAAACATGGAGCTGCTAGAGCAGATGTTAATTCTGTTGCCACAATATCAAGGATTGATGCAATTCGTTCAGTTTATGGGGTGTCAGTTGCTCGCTGTCTGATGAAGGTAGAAGCTTTGGATAAAGATCCTTCTAGCTCAGTTTTCCAGATGGAGGGGTTTATCTCCAATTCCAATTATGTAGCGAAGAAGATAACCATGGTGCTTTTTATAAATGACAGATTGGTGGATTGTACTGCATTGAAGAGAGCTCTAGAAATTGTTTATGCTGCAACATTGCCAAAAGCATCAAAACCCTTCATATACATGGCAATTATATTACCACCTGAACATGTTGATGTCAACGTTCACCCAACGAAGAGAGAGGTAAGCCTTCTGAATCAGGAAATCATCATTGAAAAGATACAGTCGGTGGTTGAATCAAGGTTGAGAAGCTCCAATGAGACACAAACATTTCAGGAACAGGCAGTCAAACCAACTCCATCCTGCCAAATGGTTTCAAGCAATGATTCAAATCGGAACCCCTCACCATCTGCAGGGTCAAAATTACAAAAGGTACCAGTGCATAAAATGGTTAGAACAGATTCATCGGATCCTGCTGGAAGGTTGCATGTTTACTTGCAACCAGAATCTTGTGGCCATCTTGAAAGGAATACTAGCTTGACTGCTATTAGATCTTCTGTTAGACAAAGAAGAAATCCGAAGGAAACTGCTGATCTGACCAGCCTTCAGGAGCTTATAGATGAAATTGATCGCAATTGTCATTCTGGTCTTCTGGACATTGTGAGACACTGCACCTATATTGGAATGGCAGATGACGTCTTTGCATTGCTTCAGCATGATACTCATCTTTACCTTGCAAATGTAGTGAACTTGAGCAAAGAGCTCATGTACCAGCAAGTTCTGCGTCGGTTTGCCCATTTTAATGCTATACAAATAAGTGAGCCAGCCCCAGTGAAGGAGTTGATCGTGTTGGCACTAAAAGAGGGCAATTTAGATCCAGAATGCAGTGAGAATGTTGAGCTGAACGAGAAGATTGCAGAGATGAACATGGAACTACTCAAGCAAAAGGCTGATATGATAGAGGAGTACTTTTGCATTCATATAGATAAAGATGGAAATTTGTCTAGGCTTCCAGTTATACTTGATCAATACACACCTGACATGGATCGTGTCCCTGAATTTGTGCTTTGTTTGGGCAACGACGTTGACTGGGAGGAGGAAAAAAAATGCCTTCAAGTAATTTCAGCTGCACTTGGAAACTTCTATGCCATGCATCCTCCTATGTTGCCCAACCCATCTGGTGATGGCTTGCAATTTTACCAAAAGAGAAAACCTTTCAGGAATCCTGAAGAAAGGCTTTCTTGCAGTACTGGAGATGATGTCATGACAGAAAATGAAATCGAGCATGAACTAGTTGCAGAGGCAGAGACTGCATGGGCCCAGCGCGAGTGGTCTATCCAGCATGTTTTGTTTCCATCAATGAGGCTCTTTTTCAAGCCACCAAATTCTATGGCTACAAATGGAACATTTGTCCGGGTAGCTTCACTCGAGAAACTATACAGGATTTTTGAAAGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

733

Amino Acids

82.53

Weight (kDa)

5.75

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	423, 827
AatII	GACGTC	2 cut(s)	281, 1437
Acc65I	GGTACC	1 cut(s)	1171
AccB1I	GGYRCC	1 cut(s)	1171
AccBSI	CCGCTC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	290
AccII	CGCG	1 cut(s)	2064
AciI	CCGC	7 cut(s)	47, 61, 93, 123, 195, 238, 268
AclI	AACGTT	1 cut(s)	960
AclWI	GGATC	5 cut(s)	737, 1202, 1215, 1607, 1791
AcoI	YGGCCR	2 cut(s)	226, 1252
AcsI	RAATTY	6 cut(s)	54, 493, 535, 1735, 1796, 2122
AcuI	CTGAAG	3 cut(s)	1328, 1433, 1986
AcyI	GRCGYC	3 cut(s)	156, 278, 1434
AfaI	GTAC	5 cut(s)	850, 1173, 1508, 1706, 1987
AfiI	CCNNNNNNNGG	4 cut(s)	244, 769, 1151, 1573
AflIII	ACRYGT	1 cut(s)	946
AhlI	ACTAGT	1 cut(s)	2029
Alw21I	GWGCWC	4 cut(s)	138, 444, 868, 1503
Alw26I	GTCTC	6 cut(s)	124, 155, 220, 1052, 1396, 2039
AlwI	GGATC	5 cut(s)	737, 1202, 1215, 1607, 1791
AlwNI	CAGNNNCTG	1 cut(s)	2048
Ama87I	CYCGRG	1 cut(s)	2165
AoxI	GGCC	5 cut(s)	196, 226, 394, 1252, 2055
ApaI	GGGCCC	1 cut(s)	2059
ApeKI	GCWGC	4 cut(s)	461, 629, 884, 1865
ApoI	RAATTY	6 cut(s)	54, 493, 535, 1735, 1796, 2122
Asp700I	GAANNNNTTC	1 cut(s)	1198
Asp718I	GGTACC	1 cut(s)	1171
AspLEI	GCGC	2 cut(s)	461, 2064
AspS9I	GGNCC	3 cut(s)	394, 2055, 2056
AsuC2I	CCSGG	1 cut(s)	2153
AsuHPI	GGTGA	4 cut(s)	50, 956, 1134, 1931
AvaI	CYCGRG	1 cut(s)	2165
BaeGI	GKGCMC	1 cut(s)	2059
BalI	TGGCCA	1 cut(s)	1254
BamHI	GGATCC	1 cut(s)	1207
BanI	GGYRCC	1 cut(s)	1171
BanII	GRGCYC	4 cut(s)	138, 868, 1503, 2059
BbsI	GAAGAC	2 cut(s)	530, 1379
Bbv12I	GWGCWC	4 cut(s)	138, 444, 868, 1503
BbvI	GCAGC	4 cut(s)	448, 616, 871, 1852
BceAI	ACGGC	4 cut(s)	110, 208, 241, 247
BcgI	CGANNNNNNTGC	2 cut(s)	1634, 1668
BclI	TGATCA	1 cut(s)	1762
BcnI	CCSGG	1 cut(s)	2153
BcoDI	GTCTC	6 cut(s)	124, 155, 220, 1052, 1396, 2039
BcuI	ACTAGT	1 cut(s)	2029
BfaI	CTAG	7 cut(s)	65, 633, 750, 869, 1272, 1743, 2030
BfmI	CTRYAG	3 cut(s)	75, 613, 1149
BglII	AGATCT	1 cut(s)	1289
BisI	GCNGC	8 cut(s)	47, 93, 196, 269, 462, 630, 885, 1866
BlsI	GCNGC	8 cut(s)	48, 94, 197, 270, 463, 631, 886, 1867
BmcAI	AGTACT	2 cut(s)	1706, 1987
Bme1390I	CCNGG	1 cut(s)	2153
BmeT110I	CYCGRG	1 cut(s)	2165
BmgT120I	GGNCC	3 cut(s)	394, 2055, 2056
BmiI	GGNNCC	5 cut(s)	45, 1136, 1173, 1209, 2057
BmrFI	CCNGG	1 cut(s)	2153
BmrI	ACTGGG	2 cut(s)	1562, 1837
BmsI	GCATC	5 cut(s)	243, 664, 911, 1900, 2183
BmuI	ACTGGG	2 cut(s)	1562, 1837
BpiI	GAAGAC	2 cut(s)	530, 1379
BpmI	CTGGAG	1 cut(s)	2010
BpuEI	CTTGAG	3 cut(s)	185, 1510, 1661
BpuMI	CCSGG	1 cut(s)	2153
Bsa29I	ATCGAT	1 cut(s)	311
BsaBI	GATNNNNATC	3 cut(s)	741, 1128, 1461
BsaHI	GRCGYC	3 cut(s)	156, 278, 1434
BsaJI	CCNNGG	3 cut(s)	229, 390, 813
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 1983, 2013
Bsc4I	CCNNNNNNNGG	4 cut(s)	244, 769, 1151, 1573
Bse118I	RCCGGY	2 cut(s)	95, 576
Bse1I	ACTGG	6 cut(s)	397, 1175, 1568, 1751, 1832, 1993
Bse3DI	GCAATG	3 cut(s)	890, 1126, 1442
Bse8I	GATNNNNATC	3 cut(s)	741, 1128, 1461
BseCI	ATCGAT	1 cut(s)	311
BseDI	CCNNGG	3 cut(s)	229, 390, 813
BseGI	GGATG	4 cut(s)	207, 234, 1097, 1891
BseJI	GATNNNNATC	3 cut(s)	741, 1128, 1461
BseLI	CCNNNNNNNGG	4 cut(s)	244, 769, 1151, 1573
BseMI	GCAATG	3 cut(s)	890, 1126, 1442
BseMII	CTCAG	2 cut(s)	491, 768
BseNI	ACTGG	6 cut(s)	397, 1175, 1568, 1751, 1832, 1993
BseRI	GAGGAG	5 cut(s)	154, 157, 348, 1715, 1847
BseSI	GKGCMC	1 cut(s)	2059
BseXI	GCAGC	4 cut(s)	448, 616, 871, 1852
BseYI	CCCAGC	1 cut(s)	2058
BsgI	GTGCAG	2 cut(s)	1393, 1851
Bsh1236I	CGCG	1 cut(s)	2064
BshFI	GGCC	5 cut(s)	198, 228, 396, 1254, 2057
BshNI	GGYRCC	1 cut(s)	1171
BshVI	ATCGAT	1 cut(s)	311
BsiHKAI	GWGCWC	4 cut(s)	138, 444, 868, 1503
BsiHKCI	CYCGRG	1 cut(s)	2165
BsiSI	CCGG	3 cut(s)	96, 577, 2152
BslFI	GGGAC	1 cut(s)	1775
BslI	CCNNNNNNNGG	4 cut(s)	244, 769, 1151, 1573
BsmAI	GTCTC	6 cut(s)	124, 155, 220, 1052, 1396, 2039
BsmFI	GGGAC	1 cut(s)	1775
BsmI	GAATGC	2 cut(s)	1625, 1713
BsnI	GGCC	5 cut(s)	198, 228, 396, 1254, 2057
BsoBI	CYCGRG	1 cut(s)	2165
Bsp120I	GGGCCC	1 cut(s)	2055
Bsp1286I	GDGCHC	5 cut(s)	138, 444, 868, 1503, 2059
Bsp143I	GATC	9 cut(s)	742, 1207, 1289, 1330, 1366, 1581, 1612, 1762, 1783
Bsp19I	CCATGG	1 cut(s)	813
BspACI	CCGC	7 cut(s)	47, 61, 93, 123, 195, 238, 268
BspANI	GGCC	5 cut(s)	198, 228, 396, 1254, 2057
BspCNI	CTCAG	2 cut(s)	490, 767
BspDI	ATCGAT	1 cut(s)	311
BspFNI	CGCG	1 cut(s)	2064
BspHI	TCATGA	1 cut(s)	2001
BspLI	GGNNCC	5 cut(s)	45, 1136, 1173, 1209, 2057
BspMAI	CTGCAG	2 cut(s)	617, 1153
BspPI	GGATC	5 cut(s)	737, 1202, 1215, 1607, 1791
BspQI	GCTCTTC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	1171
BsrBI	CCGCTC	1 cut(s)	268
BsrDI	GCAATG	3 cut(s)	890, 1126, 1442
BsrFI	RCCGGY	2 cut(s)	95, 576
BsrI	ACTGG	6 cut(s)	397, 1175, 1568, 1751, 1832, 1993
BssAI	RCCGGY	2 cut(s)	95, 576
BssECI	CCNNGG	3 cut(s)	229, 390, 813
BssMI	GATC	9 cut(s)	742, 1207, 1289, 1330, 1366, 1581, 1612, 1762, 1783
BssNI	GRCGYC	3 cut(s)	156, 278, 1434
BssT1I	CCWWGG	2 cut(s)	390, 813
Bst4CI	ACNGT	3 cut(s)	149, 376, 1023
Bst6I	CTCTTC	3 cut(s)	21, 854, 968
BstACI	GRCGYC	3 cut(s)	156, 278, 1434
BstAPI	GCANNNNNTGC	2 cut(s)	1519, 2048
BstC8I	GCNNGC	7 cut(s)	97, 160, 349, 457, 709, 1563, 1928
BstDEI	CTNAG	2 cut(s)	477, 754
BstDSI	CCRYGG	2 cut(s)	229, 813
BstF5I	GGATG	4 cut(s)	207, 234, 1097, 1891
BstFNI	CGCG	1 cut(s)	2064
BstHHI	GCGC	2 cut(s)	461, 2064
BstKTI	GATC	9 cut(s)	745, 1210, 1292, 1333, 1369, 1584, 1615, 1765, 1786
BstMAI	GTCTC	6 cut(s)	124, 155, 220, 1052, 1396, 2039
BstMBI	GATC	9 cut(s)	742, 1207, 1289, 1330, 1366, 1581, 1612, 1762, 1783
BstMWI	GCNNNNNNNGC	5 cut(s)	461, 612, 635, 1519, 2048
BstNSI	RCATGY	3 cut(s)	950, 1229, 2084
BstSCI	CCNGG	1 cut(s)	2151
BstSFI	CTRYAG	3 cut(s)	75, 613, 1149
BstSLI	GKGCMC	1 cut(s)	2059
BstUI	CGCG	1 cut(s)	2064
BstV1I	GCAGC	4 cut(s)	448, 616, 871, 1852
BstV2I	GAAGAC	2 cut(s)	530, 1379
BstX2I	RGATCY	4 cut(s)	742, 1207, 1289, 1612
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	4 cut(s)	742, 1207, 1289, 1612
Bsu15I	ATCGAT	1 cut(s)	311
BsuRI	GGCC	5 cut(s)	198, 228, 396, 1254, 2057
BsuTUI	ATCGAT	1 cut(s)	311
BtgI	CCRYGG	2 cut(s)	229, 813
BtsCI	GGATG	4 cut(s)	207, 234, 1097, 1891
BtsI	GCAGTG	3 cut(s)	527, 1405, 1630
BtsIMutI	CAGTG	5 cut(s)	527, 1182, 1405, 1575, 1630
Cac8I	GCNNGC	7 cut(s)	97, 160, 349, 457, 709, 1563, 1928
CaiI	CAGNNNCTG	1 cut(s)	2048
CciI	TCATGA	1 cut(s)	2001
CfoI	GCGC	2 cut(s)	461, 2064
Cfr10I	RCCGGY	2 cut(s)	95, 576
Cfr13I	GGNCC	3 cut(s)	394, 2055, 2056
ClaI	ATCGAT	1 cut(s)	311
CseI	GACGC	2 cut(s)	164, 1511
Csp6I	GTAC	5 cut(s)	849, 1172, 1507, 1705, 1986
CviQI	GTAC	5 cut(s)	849, 1172, 1507, 1705, 1986
DdeI	CTNAG	2 cut(s)	477, 754
DpnI	GATC	9 cut(s)	744, 1209, 1291, 1332, 1368, 1583, 1614, 1764, 1785
DpnII	GATC	9 cut(s)	742, 1207, 1289, 1330, 1366, 1581, 1612, 1762, 1783
EaeI	YGGCCR	2 cut(s)	226, 1252
Eam1104I	CTCTTC	3 cut(s)	21, 854, 968
EarI	CTCTTC	3 cut(s)	21, 854, 968
EciI	GGCGGA	1 cut(s)	112
Ecl136II	GAGCTC	3 cut(s)	136, 866, 1501
Eco130I	CCWWGG	2 cut(s)	390, 813
Eco24I	GRGCYC	4 cut(s)	138, 868, 1503, 2059
Eco53kI	GAGCTC	3 cut(s)	136, 866, 1501
Eco57I	CTGAAG	3 cut(s)	1328, 1433, 1986
Eco88I	CYCGRG	1 cut(s)	2165
EcoICRI	GAGCTC	3 cut(s)	136, 866, 1501
EcoT14I	CCWWGG	2 cut(s)	390, 813
EcoT22I	ATGCAT	1 cut(s)	1893
EcoT38I	GRGCYC	4 cut(s)	138, 868, 1503, 2059
ErhI	CCWWGG	2 cut(s)	390, 813
FalI	AAGNNNNNCTT	4 cut(s)	1959, 1991, 1963, 1995
FaqI	GGGAC	1 cut(s)	1775
FauNDI	CATATG	1 cut(s)	594
FbaI	TGATCA	1 cut(s)	1762
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	8 cut(s)	47, 93, 196, 269, 462, 630, 885, 1866
FokI	GGATG	4 cut(s)	194, 221, 1084, 1878
FriOI	GRGCYC	4 cut(s)	138, 868, 1503, 2059
Fsp4HI	GCNGC	8 cut(s)	47, 93, 196, 269, 462, 630, 885, 1866
FspBI	CTAG	7 cut(s)	65, 633, 750, 869, 1272, 1743, 2030
GlaI	GCGC	2 cut(s)	460, 2063
GluI	GCNGC	8 cut(s)	47, 93, 196, 269, 462, 630, 885, 1866
GsaI	CCCAGC	1 cut(s)	2062
GsuI	CTGGAG	1 cut(s)	2010
HaeIII	GGCC	5 cut(s)	198, 228, 396, 1254, 2057
HapII	CCGG	3 cut(s)	96, 577, 2152
HgaI	GACGC	2 cut(s)	164, 1511
HhaI	GCGC	2 cut(s)	461, 2064
Hin1I	GRCGYC	3 cut(s)	156, 278, 1434
Hin6I	GCGC	2 cut(s)	459, 2062
HinP1I	GCGC	2 cut(s)	459, 2062
HincII	GTYRAC	3 cut(s)	291, 958, 1825
HindII	GTYRAC	3 cut(s)	291, 958, 1825
HindIII	AAGCTT	1 cut(s)	729
HinfI	GANTC	9 cut(s)	71, 87, 432, 994, 1034, 1124, 1199, 1244, 1960
HpaII	CCGG	3 cut(s)	96, 577, 2152
HphI	GGTGA	4 cut(s)	50, 956, 1134, 1931
Hpy166II	GTNNAC	7 cut(s)	82, 291, 958, 964, 1231, 1486, 1825
Hpy188I	TCNGA	9 cut(s)	220, 480, 519, 717, 993, 1134, 1207, 1317, 1335
Hpy8I	GTNNAC	7 cut(s)	82, 291, 958, 964, 1231, 1486, 1825
Hpy99I	CGWCG	8 cut(s)	158, 182, 185, 280, 283, 295, 1527, 1823
HpyAV	CCTTC	9 cut(s)	715, 756, 922, 998, 1212, 1312, 1352, 1567, 1859
HpyCH4III	ACNGT	3 cut(s)	149, 376, 1023
HpyCH4IV	ACGT	6 cut(s)	177, 278, 293, 960, 1434, 1821
HpyF10VI	GCNNNNNNNGC	5 cut(s)	461, 612, 635, 1519, 2048
HpyF3I	CTNAG	2 cut(s)	477, 754
HpySE526I	ACGT	6 cut(s)	177, 278, 293, 960, 1434, 1821
Hsp92I	GRCGYC	3 cut(s)	156, 278, 1434
HspAI	GCGC	2 cut(s)	459, 2062
KpnI	GGTACC	1 cut(s)	1175
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	1762
Kzo9I	GATC	9 cut(s)	742, 1207, 1289, 1330, 1366, 1581, 1612, 1762, 1783
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	6 cut(s)	43, 167, 439, 626, 1055, 1348
Lsp1109I	GCAGC	4 cut(s)	448, 616, 871, 1852
LweI	GCATC	5 cut(s)	243, 664, 911, 1900, 2183
MaeI	CTAG	7 cut(s)	65, 633, 750, 869, 1272, 1743, 2030
MaeII	ACGT	6 cut(s)	177, 278, 293, 960, 1434, 1821
MaeIII	GTNAC	2 cut(s)	370, 376
MalI	GATC	9 cut(s)	744, 1209, 1291, 1332, 1368, 1583, 1614, 1764, 1785
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	9 cut(s)	742, 1207, 1289, 1330, 1366, 1581, 1612, 1762, 1783
MfeI	CAATTG	1 cut(s)	1372
MflI	RGATCY	4 cut(s)	742, 1207, 1289, 1612
MhlI	GDGCHC	5 cut(s)	138, 444, 868, 1503, 2059
MlsI	TGGCCA	1 cut(s)	1254
MluNI	TGGCCA	1 cut(s)	1254
MlyI	GAGTC	1 cut(s)	441
MmeI	TCCRAC	1 cut(s)	133
Mox20I	TGGCCA	1 cut(s)	1254
Mph1103I	ATGCAT	1 cut(s)	1893
MreI	CGCCGGCG	1 cut(s)	95
MroNI	GCCGGC	1 cut(s)	95
MroXI	GAANNNNTTC	1 cut(s)	1198
MscI	TGGCCA	1 cut(s)	1254
MseI	TTAA	3 cut(s)	572, 645, 1539
MslI	CAYNNNNRTG	4 cut(s)	597, 920, 951, 1539
Msp20I	TGGCCA	1 cut(s)	1254
MspA1I	CMGCKG	1 cut(s)	1865
MspI	CCGG	3 cut(s)	96, 577, 2152
MspR9I	CCNGG	1 cut(s)	2153
MunI	CAATTG	1 cut(s)	1372
Mva1269I	GAATGC	2 cut(s)	1625, 1713
MvnI	CGCG	1 cut(s)	2064
MwoI	GCNNNNNNNGC	5 cut(s)	461, 612, 635, 1519, 2048
NaeI	GCCGGC	1 cut(s)	97
NciI	CCSGG	1 cut(s)	2153
NcoI	CCATGG	1 cut(s)	813
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	9 cut(s)	742, 1207, 1289, 1330, 1366, 1581, 1612, 1762, 1783
NgoMIV	GCCGGC	1 cut(s)	95
NlaIV	GGNNCC	5 cut(s)	45, 1136, 1173, 1209, 2057
NmuCI	GTSAC	1 cut(s)	376
NsiI	ATGCAT	1 cut(s)	1893
NspI	RCATGY	3 cut(s)	950, 1229, 2084
PaeR7I	CTCGAG	1 cut(s)	2165
PagI	TCATGA	1 cut(s)	2001
PciI	ACATGT	1 cut(s)	946
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	3 cut(s)	96, 287, 317
PctI	GAATGC	2 cut(s)	1625, 1713
PdiI	GCCGGC	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	1198
PfeI	GAWTC	8 cut(s)	71, 87, 994, 1034, 1124, 1199, 1244, 1960
PkrI	GCNGC	8 cut(s)	48, 94, 197, 270, 463, 631, 886, 1867
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
PscI	ACATGT	1 cut(s)	946
PsiI	TTATAA	2 cut(s)	423, 827
Psp124BI	GAGCTC	3 cut(s)	138, 868, 1503
Psp1406I	AACGTT	1 cut(s)	960
PspFI	CCCAGC	1 cut(s)	2058
PspN4I	GGNNCC	5 cut(s)	45, 1136, 1173, 1209, 2057
PspOMI	GGGCCC	1 cut(s)	2055
PspPI	GGNCC	3 cut(s)	394, 2055, 2056
PstI	CTGCAG	2 cut(s)	617, 1153
PstNI	CAGNNNCTG	1 cut(s)	2048
PsuI	RGATCY	4 cut(s)	742, 1207, 1289, 1612
PvuII	CAGCTG	1 cut(s)	1865
RsaI	GTAC	5 cut(s)	850, 1173, 1508, 1706, 1987
RsaNI	GTAC	5 cut(s)	849, 1172, 1507, 1705, 1986
RseI	CAYNNNNRTG	4 cut(s)	597, 920, 951, 1539
SacI	GAGCTC	3 cut(s)	138, 868, 1503
SalI	GTCGAC	1 cut(s)	289
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	572, 645, 1539
SatI	GCNGC	8 cut(s)	47, 93, 196, 269, 462, 630, 885, 1866
Sau3AI	GATC	9 cut(s)	742, 1207, 1289, 1330, 1366, 1581, 1612, 1762, 1783
Sau96I	GGNCC	3 cut(s)	394, 2055, 2056
ScaI	AGTACT	2 cut(s)	1706, 1987
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	1 cut(s)	2153
SduI	GDGCHC	5 cut(s)	138, 444, 868, 1503, 2059
SfaNI	GCATC	5 cut(s)	243, 664, 911, 1900, 2183
SfcI	CTRYAG	3 cut(s)	75, 613, 1149
Sfr274I	CTCGAG	1 cut(s)	2165
SgrAI	CRCCGGYG	1 cut(s)	95
SlaI	CTCGAG	1 cut(s)	2165
SmiMI	CAYNNNNRTG	4 cut(s)	597, 920, 951, 1539
SmlI	CTYRAG	4 cut(s)	200, 1489, 1676, 2165
SmoI	CTYRAG	4 cut(s)	200, 1489, 1676, 2165
SpeI	ACTAGT	1 cut(s)	2029
SsiI	CCGC	7 cut(s)	47, 61, 93, 123, 195, 238, 268
SspMI	CTAG	7 cut(s)	65, 633, 750, 869, 1272, 1743, 2030
SstI	GAGCTC	3 cut(s)	138, 868, 1503
StyD4I	CCNGG	1 cut(s)	2151
StyI	CCWWGG	2 cut(s)	390, 813
TaaI	ACNGT	3 cut(s)	149, 376, 1023
TaiI	ACGT	6 cut(s)	180, 281, 296, 963, 1437, 1824
TaqI	TCGA	7 cut(s)	153, 281, 290, 311, 320, 2019, 2166
TatI	WGTACW	3 cut(s)	848, 1704, 1985
TauI	GCSGC	4 cut(s)	49, 95, 198, 271
TfiI	GAWTC	8 cut(s)	71, 87, 994, 1034, 1124, 1199, 1244, 1960
Tru1I	TTAA	3 cut(s)	572, 645, 1539
Tru9I	TTAA	3 cut(s)	572, 645, 1539
TscAI	CASTG	5 cut(s)	534, 1182, 1412, 1575, 1630
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	4 cut(s)	461, 629, 884, 1865
Tsp45I	GTSAC	1 cut(s)	376
TspRI	CASTG	5 cut(s)	534, 1182, 1412, 1575, 1630
XapI	RAATTY	6 cut(s)	54, 493, 535, 1735, 1796, 2122
XbaI	TCTAGA	1 cut(s)	868
XceI	RCATGY	3 cut(s)	950, 1229, 2084
XhoI	CTCGAG	1 cut(s)	2165
XmiI	GTMKAC	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	1198
XspI	CTAG	7 cut(s)	65, 633, 750, 869, 1272, 1743, 2030
ZraI	GACGTC	2 cut(s)	279, 1435
ZrmI	AGTACT	2 cut(s)	1706, 1987
Zsp2I	ATGCAT	1 cut(s)	1893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.