Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Forward (+)

18050769 .. 18061671

Gene Structure 10903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1950 bp

ATGGAAGAAGAAGAAGAAGAAGAAGAGCAAGTTGCGACGGAGCCTCCCAAAATTCACCGCCTAGACGAGTCCGTAGTGAACCGAATCGCCGCCGGTGAGGTCATCCAACGCCCCGTCTCCGCCGTCAAGGAGCTCGTCGAGAACAGCCTCGACGCCCACTCCTCCTCCATTAACGTCGTCGTGAAGGACGGCGGCCTCAAGCTCATCCAAGTCTCCGACGACGGCCACGGAATCCGATATGAGGACTTGCCGATACTGTGCGAGCGGCATACGACGTCAAAATTGTCGTCGTTTGAAGACCTGCAGTCCATAAAGTCGATGGGGTTTCGAGGAGAAGCTCTTGCGAGCATGACGTATGTGGCTCATGTGACGGTGACGACGATCACCAAAGGGCAGTTGCATGGTTACAGGGTTTCTTATAAAGATGGAGTGATGGAGAATGAGCCGAAGGCGTGTGCTGCCGTAAAAGGAACTCAGATAATGATTGAGAACTTATTCTATAACATGTCTGCCCGGAGAAAGAATCTGCAAAACTCTGCTGATGATTATTCAAAGATTGTAGATTTGTTAAGCCGGTTTGCCATTCATCACACAAGTGTTAGCTTCTCCTGCAGAAAGCATGGAGCCGGTAGAGCAGATGTTAGTTCAGTTGCCACATTATCAAGAATTGATGCGATTCGTTCAGTTTATGGGGTGTCAGTTGCCCGCAGTCTGATGAAAGTAGAAGCTTTGGACAATGATCCGTCGAGCTCAGTTTTCCAGATGGATGGCTTTATCTCCAATTCCGAATATGTTGCGAAGAAGATAACTATGGTGCTTTTTATAAACGATAGATTGGTGGATTGCACTGCATTGAAGAGAGCTCTGGAAATTGTTTATACTGCTACATTGCCGAAAGCATCAAAACCCTTCATATACATGTCAATTGTATTACCACCTGAACATGTTGATGTGAATGTTCACCCGACAAAGAGGGAGGTGAGTCTTCTGAATCAGGAAGTCATCATTGAGAAGATACAGTCAGTGGTTGAATCAAGATTGAGAAGCTCCAATGAGACACAGATATTTCAGGAGCAGACAGTTGAACCACCTTCATCCAGCCAAATGATTTCTAGCAAGGATTCAAATCGAAATCCTTTGGCATCTGCAGGATCAAAATCACAAAAGGTTCCAGTGAATAAAATGGTCAGAACAGATTCATCGGATCCTGCTGGAAGGTTGCATATTTACTTGCACGCAGAGCCTCGTGGCCATCTTGAAAAGAATACTAGCTTGACTGCTGTTAGATCGTCTGTTAGACAAAGAAGGAACCCAAAGGAAACGGCTGATCTGAGTAGCATTCAGGAGCTTATTACTGAAATTGATAGCAATTGTCATTCTGGTATGCTAGACATTGTGAGAAACTGCACATACATTGGAATGGCAGATGACGTCTTTGCATTGCTTCAGCATGACACACACCTCTATCTTGCAAATGTAGTAAGCTTGAGCAAAGAGCTCATGTATCAGCAAGTTCTACGTCGATTTGCTCATTTTAATGCTATACAATTAAGCAACCCAGCCCCGCTGAAGGAGTTGATTGTGTTGGCACTGAAAGAGGGGGATACAGATCCAGAATCCACTGAGAATGATGAACTAAATGAGAAGATTGCAGAAATGAATACAGAACTACTTAAGCAAAAGGCTGATCTAGTAGAGGAGTACTTTTCCATTCACATAGATAAAGATGGAAATTTGTCCAGGCTTCCGGTCATACTTGACCAATACACACCTGACATGGATCGTGTCCCAGAATTTGTGCTTTGTTTGGGCAACGATGTTGATTGGGAAGAAGAGAAAAAATGCTTCCAAGTAATTTCAGCTGCACTTGGGAACTTTTATGCCATGCATCCTCCTATGTTACCCAACCCATCTGGTGATGGTTTGCAATTTTACCAAAAAGGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

649

Amino Acids

72.44

Weight (kDa)

5.48

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	37 - 100	6e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	40 - 142	3.1e-14	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_mis_repair	PF01119	226 - 347	1.3e-28	DNA mismatch repair protein, C-terminal domain
Mlh1_C	PF16413	444 - 632	8.9e-63	DNA mismatch repair protein Mlh1 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	420, 824
AatII	GACGTC	2 cut(s)	278, 1434
Acc36I	ACCTGC	1 cut(s)	309
AccBSI	CCGCTC	1 cut(s)	265
AciI	CCGC	7 cut(s)	58, 90, 120, 192, 265, 706, 1565
AclWI	GGATC	6 cut(s)	734, 1159, 1199, 1212, 1604, 1788
AcoI	YGGCCR	2 cut(s)	223, 1249
AcsI	RAATTY	3 cut(s)	51, 1732, 1793
AcuI	CTGAAG	2 cut(s)	1430, 1589
AcyI	GRCGYC	3 cut(s)	153, 275, 1431
AfaI	GTAC	1 cut(s)	1703
AfiI	CCNNNNNNNGG	2 cut(s)	241, 1570
AflII	CTTAAG	1 cut(s)	1673
AflIII	ACRYGT	3 cut(s)	504, 918, 943
AgsI	TTSAA	7 cut(s)	296, 552, 856, 1031, 1085, 1125, 1259
AhdI	GACNNNNNGTC	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	1739
AleI	CACNNNNGTG	1 cut(s)	594
Alw21I	GWGCWC	4 cut(s)	135, 752, 865, 1500
Alw26I	GTCTC	3 cut(s)	121, 217, 1049
AlwI	GGATC	6 cut(s)	734, 1159, 1199, 1212, 1604, 1788
AoxI	GGCC	3 cut(s)	193, 223, 1249
ApeKI	GCWGC	2 cut(s)	458, 1862
ApoI	RAATTY	3 cut(s)	51, 1732, 1793
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
Asp700I	GAANNNNTTC	2 cut(s)	494, 1195
AsuC2I	CCSGG	1 cut(s)	514
AsuHPI	GGTGA	7 cut(s)	47, 107, 376, 385, 953, 991, 1928
BalI	TGGCCA	1 cut(s)	1251
BamHI	GGATCC	1 cut(s)	1204
BanII	GRGCYC	4 cut(s)	135, 752, 865, 1500
BauI	CACGAG	1 cut(s)	1245
BbsI	GAAGAC	2 cut(s)	303, 977
Bbv12I	GWGCWC	4 cut(s)	135, 752, 865, 1500
BbvI	GCAGC	2 cut(s)	445, 1849
BccI	CCATC	9 cut(s)	313, 419, 427, 757, 761, 1260, 1721, 1913, 1918
BceAI	ACGGC	5 cut(s)	107, 205, 238, 446, 1338
BcgI	CGANNNNNNTGC	2 cut(s)	776, 810
BciT130I	CCWGG	1 cut(s)	1741
BciVI	GTATCC	1 cut(s)	1597
BcnI	CCSGG	1 cut(s)	514
BcoDI	GTCTC	3 cut(s)	121, 217, 1049
BfaI	CTAG	5 cut(s)	62, 1113, 1269, 1388, 1691
BfmI	CTRYAG	3 cut(s)	302, 610, 1146
BfrI	CTTAAG	1 cut(s)	1673
BfuAI	ACCTGC	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	1597
BisI	GCNGC	5 cut(s)	90, 193, 266, 459, 1863
BlsI	GCNGC	5 cut(s)	91, 194, 267, 460, 1864
BmcAI	AGTACT	1 cut(s)	1703
Bme1390I	CCNGG	2 cut(s)	514, 1741
BmeRI	GACNNNNNGTC	1 cut(s)	304
BmiI	GGNNCC	5 cut(s)	42, 625, 1170, 1206, 1310
BmrFI	CCNGG	2 cut(s)	514, 1741
BmsI	GCATC	4 cut(s)	661, 908, 1151, 1897
BpiI	GAAGAC	2 cut(s)	303, 977
BpuEI	CTTGAG	2 cut(s)	182, 1507
BpuMI	CCSGG	1 cut(s)	514
BsaBI	GATNNNNATC	3 cut(s)	1125, 1156, 1608
BsaHI	GRCGYC	3 cut(s)	153, 275, 1431
BsaJI	CCNNGG	1 cut(s)	226
BsaWI	WCCGGW	1 cut(s)	1747
BsaXI	ACNNNNNCTCC	6 cut(s)	28, 58, 143, 149, 173, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 1570
Bse118I	RCCGGY	3 cut(s)	92, 573, 626
Bse1I	ACTGG	1 cut(s)	1172
Bse3DI	GCAATG	2 cut(s)	887, 1439
Bse8I	GATNNNNATC	3 cut(s)	1125, 1156, 1608
BseBI	CCWGG	1 cut(s)	1741
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	5 cut(s)	102, 204, 772, 1094, 1888
BseJI	GATNNNNATC	3 cut(s)	1125, 1156, 1608
BseLI	CCNNNNNNNGG	2 cut(s)	241, 1570
BseMI	GCAATG	2 cut(s)	887, 1439
BseMII	CTCAG	4 cut(s)	488, 765, 1322, 1614
BseNI	ACTGG	1 cut(s)	1172
BseRI	GAGGAG	4 cut(s)	151, 154, 345, 1712
BseXI	GCAGC	2 cut(s)	445, 1849
BseYI	CCCAGC	1 cut(s)	1558
BsgI	GTGCAG	2 cut(s)	1390, 1848
BshFI	GGCC	3 cut(s)	195, 225, 1251
BsiHKAI	GWGCWC	4 cut(s)	135, 752, 865, 1500
BsiSI	CCGG	5 cut(s)	93, 514, 574, 627, 1748
BslFI	GGGAC	1 cut(s)	1772
BslI	CCNNNNNNNGG	2 cut(s)	241, 1570
BsmAI	GTCTC	3 cut(s)	121, 217, 1049
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	1772
BsmI	GAATGC	1 cut(s)	1338
BsnI	GGCC	3 cut(s)	195, 225, 1251
Bsp1286I	GDGCHC	4 cut(s)	135, 752, 865, 1500
Bsp143I	GATC	9 cut(s)	381, 739, 1151, 1204, 1286, 1327, 1609, 1687, 1780
BspACI	CCGC	7 cut(s)	58, 90, 120, 192, 265, 706, 1565
BspANI	GGCC	3 cut(s)	195, 225, 1251
BspCNI	CTCAG	4 cut(s)	487, 764, 1323, 1615
BspLI	GGNNCC	5 cut(s)	42, 625, 1170, 1206, 1310
BspMAI	CTGCAG	3 cut(s)	306, 614, 1150
BspMI	ACCTGC	1 cut(s)	309
BspPI	GGATC	6 cut(s)	734, 1159, 1199, 1212, 1604, 1788
BspQI	GCTCTTC	1 cut(s)	18
BspTI	CTTAAG	1 cut(s)	1673
BsrBI	CCGCTC	1 cut(s)	265
BsrDI	GCAATG	2 cut(s)	887, 1439
BsrFI	RCCGGY	3 cut(s)	92, 573, 626
BsrI	ACTGG	1 cut(s)	1172
BssAI	RCCGGY	3 cut(s)	92, 573, 626
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	9 cut(s)	381, 739, 1151, 1204, 1286, 1327, 1609, 1687, 1780
BssNI	GRCGYC	3 cut(s)	153, 275, 1431
BssSI	CACGAG	1 cut(s)	1245
Bst2BI	CACGAG	1 cut(s)	1245
Bst2UI	CCWGG	1 cut(s)	1741
Bst4CI	ACNGT	4 cut(s)	258, 373, 1020, 1081
Bst6I	CTCTTC	3 cut(s)	18, 851, 1827
BstACI	GRCGYC	3 cut(s)	153, 275, 1431
BstAFI	CTTAAG	1 cut(s)	1673
BstC8I	GCNNGC	4 cut(s)	263, 346, 706, 1236
BstDEI	CTNAG	4 cut(s)	474, 751, 1331, 1623
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	5 cut(s)	102, 204, 772, 1094, 1888
BstKTI	GATC	9 cut(s)	384, 742, 1154, 1207, 1289, 1330, 1612, 1690, 1783
BstMAI	GTCTC	3 cut(s)	121, 217, 1049
BstMBI	GATC	9 cut(s)	381, 739, 1151, 1204, 1286, 1327, 1609, 1687, 1780
BstMWI	GCNNNNNNNGC	4 cut(s)	458, 609, 632, 1240
BstNI	CCWGG	1 cut(s)	1741
BstNSI	RCATGY	3 cut(s)	508, 922, 947
BstSCI	CCNGG	2 cut(s)	512, 1739
BstSFI	CTRYAG	3 cut(s)	302, 610, 1146
BstV1I	GCAGC	2 cut(s)	445, 1849
BstV2I	GAAGAC	2 cut(s)	303, 977
BstX2I	RGATCY	2 cut(s)	1204, 1609
BstXI	CCANNNNNNTGG	1 cut(s)	767
BstYI	RGATCY	2 cut(s)	1204, 1609
BsuI	GTATCC	1 cut(s)	1597
BsuRI	GGCC	3 cut(s)	195, 225, 1251
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	5 cut(s)	102, 204, 772, 1094, 1888
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	5 cut(s)	846, 1029, 1179, 1589, 1620
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	4 cut(s)	263, 346, 706, 1236
Cfr10I	RCCGGY	3 cut(s)	92, 573, 626
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	1702
CviQI	GTAC	1 cut(s)	1702
DdeI	CTNAG	4 cut(s)	474, 751, 1331, 1623
DpnI	GATC	9 cut(s)	383, 741, 1153, 1206, 1288, 1329, 1611, 1689, 1782
DpnII	GATC	9 cut(s)	381, 739, 1151, 1204, 1286, 1327, 1609, 1687, 1780
DriI	GACNNNNNGTC	1 cut(s)	304
EaeI	YGGCCR	2 cut(s)	223, 1249
Eam1104I	CTCTTC	3 cut(s)	18, 851, 1827
Eam1105I	GACNNNNNGTC	1 cut(s)	304
EarI	CTCTTC	3 cut(s)	18, 851, 1827
EciI	GGCGGA	1 cut(s)	109
Ecl136II	GAGCTC	4 cut(s)	133, 750, 863, 1498
Eco24I	GRGCYC	4 cut(s)	135, 752, 865, 1500
Eco53kI	GAGCTC	4 cut(s)	133, 750, 863, 1498
Eco57I	CTGAAG	2 cut(s)	1430, 1589
EcoICRI	GAGCTC	4 cut(s)	133, 750, 863, 1498
EcoRII	CCWGG	1 cut(s)	1739
EcoT22I	ATGCAT	1 cut(s)	1890
EcoT38I	GRGCYC	4 cut(s)	135, 752, 865, 1500
Esp3I	CGTCTC	1 cut(s)	121
FaqI	GGGAC	1 cut(s)	1772
FauI	CCCGC	2 cut(s)	713, 1572
Fnu4HI	GCNGC	5 cut(s)	90, 193, 266, 459, 1863
FokI	GGATG	5 cut(s)	89, 191, 779, 1081, 1875
FriOI	GRGCYC	4 cut(s)	135, 752, 865, 1500
Fsp4HI	GCNGC	5 cut(s)	90, 193, 266, 459, 1863
FspBI	CTAG	5 cut(s)	62, 1113, 1269, 1388, 1691
GluI	GCNGC	5 cut(s)	90, 193, 266, 459, 1863
GsaI	CCCAGC	1 cut(s)	1562
HaeIII	GGCC	3 cut(s)	195, 225, 1251
HapII	CCGG	5 cut(s)	93, 514, 574, 627, 1748
HgaI	GACGC	1 cut(s)	161
Hin1I	GRCGYC	3 cut(s)	153, 275, 1431
HindIII	AAGCTT	2 cut(s)	726, 1483
HpaII	CCGG	5 cut(s)	93, 514, 574, 627, 1748
HphI	GGTGA	7 cut(s)	47, 107, 376, 385, 953, 991, 1928
Hpy166II	GTNNAC	2 cut(s)	79, 961
Hpy188I	TCNGA	9 cut(s)	217, 236, 477, 714, 787, 990, 1190, 1204, 1332
Hpy8I	GTNNAC	2 cut(s)	79, 961
HpyAV	CCTTC	7 cut(s)	178, 442, 919, 1101, 1209, 1299, 1564
HpyCH4III	ACNGT	4 cut(s)	258, 373, 1020, 1081
HpyCH4IV	ACGT	5 cut(s)	174, 275, 353, 1431, 1519
HpyF10VI	GCNNNNNNNGC	4 cut(s)	458, 609, 632, 1240
HpyF3I	CTNAG	4 cut(s)	474, 751, 1331, 1623
HpySE526I	ACGT	5 cut(s)	174, 275, 353, 1431, 1519
Hsp92I	GRCGYC	3 cut(s)	153, 275, 1431
Kzo9I	GATC	9 cut(s)	381, 739, 1151, 1204, 1286, 1327, 1609, 1687, 1780
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	6 cut(s)	40, 130, 623, 1052, 1072, 1345
Lsp1109I	GCAGC	2 cut(s)	445, 1849
LweI	GCATC	4 cut(s)	661, 908, 1151, 1897
MaeI	CTAG	5 cut(s)	62, 1113, 1269, 1388, 1691
MaeII	ACGT	5 cut(s)	174, 275, 353, 1431, 1519
MaeIII	GTNAC	4 cut(s)	367, 373, 404, 1899
MalI	GATC	9 cut(s)	383, 741, 1153, 1206, 1288, 1329, 1611, 1689, 1782
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	9 cut(s)	381, 739, 1151, 1204, 1286, 1327, 1609, 1687, 1780
MfeI	CAATTG	2 cut(s)	924, 1369
MflI	RGATCY	2 cut(s)	1204, 1609
MhlI	GDGCHC	4 cut(s)	135, 752, 865, 1500
MlsI	TGGCCA	1 cut(s)	1251
MluNI	TGGCCA	1 cut(s)	1251
MlyI	GAGTC	2 cut(s)	77, 991
MmeI	TCCRAC	2 cut(s)	130, 240
Mox20I	TGGCCA	1 cut(s)	1251
Mph1103I	ATGCAT	1 cut(s)	1890
MroXI	GAANNNNTTC	2 cut(s)	494, 1195
MscI	TGGCCA	1 cut(s)	1251
MseI	TTAA	5 cut(s)	171, 569, 1536, 1550, 1674
MslI	CAYNNNNRTG	5 cut(s)	594, 917, 948, 1418, 1536
Msp20I	TGGCCA	1 cut(s)	1251
MspA1I	CMGCKG	2 cut(s)	1567, 1862
MspCI	CTTAAG	1 cut(s)	1673
MspI	CCGG	5 cut(s)	93, 514, 574, 627, 1748
MspR9I	CCNGG	2 cut(s)	514, 1741
MunI	CAATTG	2 cut(s)	924, 1369
Mva1269I	GAATGC	1 cut(s)	1338
MvaI	CCWGG	1 cut(s)	1741
MwoI	GCNNNNNNNGC	4 cut(s)	458, 609, 632, 1240
NciI	CCSGG	1 cut(s)	514
NdeII	GATC	9 cut(s)	381, 739, 1151, 1204, 1286, 1327, 1609, 1687, 1780
NlaIV	GGNNCC	5 cut(s)	42, 625, 1170, 1206, 1310
NmuCI	GTSAC	2 cut(s)	367, 373
NsiI	ATGCAT	1 cut(s)	1890
NspI	RCATGY	3 cut(s)	508, 922, 947
OliI	CACNNNNGTG	1 cut(s)	594
PciI	ACATGT	3 cut(s)	504, 918, 943
PciSI	GCTCTTC	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	377
PctI	GAATGC	1 cut(s)	1338
PdmI	GAANNNNTTC	2 cut(s)	494, 1195
PfeI	GAWTC	9 cut(s)	84, 231, 523, 676, 991, 1031, 1121, 1196, 1616
PkrI	GCNGC	5 cut(s)	91, 194, 267, 460, 1864
PleI	GAGTC	2 cut(s)	76, 990
PpsI	GAGTC	2 cut(s)	76, 990
PscI	ACATGT	3 cut(s)	504, 918, 943
PsiI	TTATAA	2 cut(s)	420, 824
Psp124BI	GAGCTC	4 cut(s)	135, 752, 865, 1500
Psp6I	CCWGG	1 cut(s)	1739
PspFI	CCCAGC	1 cut(s)	1558
PspGI	CCWGG	1 cut(s)	1739
PspN4I	GGNNCC	5 cut(s)	42, 625, 1170, 1206, 1310
PstI	CTGCAG	3 cut(s)	306, 614, 1150
PsuI	RGATCY	2 cut(s)	1204, 1609
PvuII	CAGCTG	1 cut(s)	1862
RsaI	GTAC	1 cut(s)	1703
RsaNI	GTAC	1 cut(s)	1702
RseI	CAYNNNNRTG	5 cut(s)	594, 917, 948, 1418, 1536
SacI	GAGCTC	4 cut(s)	135, 752, 865, 1500
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	5 cut(s)	171, 569, 1536, 1550, 1674
SatI	GCNGC	5 cut(s)	90, 193, 266, 459, 1863
Sau3AI	GATC	9 cut(s)	381, 739, 1151, 1204, 1286, 1327, 1609, 1687, 1780
ScaI	AGTACT	1 cut(s)	1703
SchI	GAGTC	2 cut(s)	77, 991
ScrFI	CCNGG	2 cut(s)	514, 1741
SduI	GDGCHC	4 cut(s)	135, 752, 865, 1500
SfaNI	GCATC	4 cut(s)	661, 908, 1151, 1897
SfcI	CTRYAG	3 cut(s)	302, 610, 1146
SgrAI	CRCCGGYG	1 cut(s)	92
SmiMI	CAYNNNNRTG	5 cut(s)	594, 917, 948, 1418, 1536
SmlI	CTYRAG	3 cut(s)	197, 1486, 1673
SmoI	CTYRAG	3 cut(s)	197, 1486, 1673
SsiI	CCGC	7 cut(s)	58, 90, 120, 192, 265, 706, 1565
SspMI	CTAG	5 cut(s)	62, 1113, 1269, 1388, 1691
SstI	GAGCTC	4 cut(s)	135, 752, 865, 1500
StyD4I	CCNGG	2 cut(s)	512, 1739
TaaI	ACNGT	4 cut(s)	258, 373, 1020, 1081
TaiI	ACGT	5 cut(s)	177, 278, 356, 1434, 1522
TaqI	TCGA	7 cut(s)	138, 150, 317, 328, 746, 1129, 1522
TatI	WGTACW	1 cut(s)	1701
TauI	GCSGC	3 cut(s)	92, 195, 268
TfiI	GAWTC	9 cut(s)	84, 231, 523, 676, 991, 1031, 1121, 1196, 1616
Tru1I	TTAA	5 cut(s)	171, 569, 1536, 1550, 1674
Tru9I	TTAA	5 cut(s)	171, 569, 1536, 1550, 1674
TscAI	CASTG	5 cut(s)	853, 1029, 1179, 1596, 1627
TseFI	GTSAC	2 cut(s)	367, 373
TseI	GCWGC	2 cut(s)	458, 1862
Tsp45I	GTSAC	2 cut(s)	367, 373
TspDTI	ATGAA	7 cut(s)	575, 731, 901, 1083, 1188, 1647, 1673
TspGWI	ACGGA	4 cut(s)	53, 61, 243, 732
TspRI	CASTG	5 cut(s)	853, 1029, 1179, 1596, 1627
Vha464I	CTTAAG	1 cut(s)	1673
XapI	RAATTY	3 cut(s)	51, 1732, 1793
XceI	RCATGY	3 cut(s)	508, 922, 947
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmnI	GAANNNNTTC	2 cut(s)	494, 1195
XspI	CTAG	5 cut(s)	62, 1113, 1269, 1388, 1691
ZraI	GACGTC	2 cut(s)	276, 1432
ZrmI	AGTACT	1 cut(s)	1703
Zsp2I	ATGCAT	1 cut(s)	1890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.