Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Reverse (-)

22820545 .. 22826283

Gene Structure 5739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGCGGTGTTGCTACGGTGACCGTTGCTAATGATGGTGGCCTTTCTAGTGGTGGTCCGATTCCGGTGCGGGACGGATCCGGGAATTCTGTTGGAGGCTTCAATGAGGACGGTGGCGTTGAAGATGGCAGCGGCGGCGGTATGCCAATTAAGCAAAGGCCACCGACAGACCTCCTTTTCTCAAAGGAAATATTCTTTTGGTTCCCCACTTTTGCCTTTGTTCCGAACGAGAGGAGCAGGAAGGAGAAGGAAGACGACCCGGGGGTTCCGGTTGGTGTGTGGGAAGAAGAAGAAGAGCAAGTGGCGACGAAGCCTCCCCAAATACACCGCCTAGACGAGTCCGTCGTGAACCGAATCACCGCCGGTGAGGTCATCCAACGCCCGTCTCGGCCGTCAAGGAGCTCGTCGAGAACAGCCTTGGACTTGCCGATATTGTGTGAGCGGCATACGGCGTCGGAATTGTCGTCGTTTGAAGACCCGCAGTCCATAAAGTCGATGGGGTTTCTAGGAGTGAGCATGACGTATATAGCTCATGTGACGGTGACGACGATCACCAAAAGGCAATTGCATGGTTACAGGGTTTCTTATAAAGATGGAGTGATGGAGAATGAGCCGAAGGCGTGCTGCCGTAAAAAAAGGAACTCGGATAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

218

Amino Acids

23.77

Weight (kDa)

5.5

Isoelectric Point (pI)

59.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	588
AasI	GACNNNNNNGTC	1 cut(s)	341
AccBSI	CCGCTC	1 cut(s)	442
AciI	CCGC	9 cut(s)	6, 70, 132, 135, 138, 328, 360, 442, 479
AclWI	GGATC	2 cut(s)	72, 85
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	452
AgsI	TTSAA	3 cut(s)	103, 122, 473
AhdI	GACNNNNNGTC	1 cut(s)	481
AluBI	AGCT	2 cut(s)	402, 530
AluI	AGCT	2 cut(s)	402, 530
Alw21I	GWGCWC	1 cut(s)	404
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	2 cut(s)	72, 85
Ama87I	CYCGRG	1 cut(s)	259
AoxI	GGCC	3 cut(s)	40, 158, 389
ApeKI	GCWGC	2 cut(s)	129, 624
ApoI	RAATTY	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	56
AsuC2I	CCSGG	3 cut(s)	82, 260, 261
AsuHPI	GGTGA	5 cut(s)	31, 349, 377, 544, 553
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	404
BbsI	GAAGAC	2 cut(s)	258, 480
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	2 cut(s)	141, 611
BccI	CCATC	5 cut(s)	29, 119, 490, 587, 595
BceAI	ACGGC	3 cut(s)	376, 465, 612
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BcnI	CCSGG	3 cut(s)	82, 260, 261
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	3 cut(s)	48, 332, 506
BisI	GCNGC	5 cut(s)	130, 133, 136, 443, 625
BlsI	GCNGC	5 cut(s)	131, 134, 137, 444, 626
Bme1390I	CCNGG	3 cut(s)	82, 260, 261
Bme18I	GGWCC	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	3 cut(s)	79, 203, 267
BmrFI	CCNGG	3 cut(s)	82, 260, 261
BpiI	GAAGAC	2 cut(s)	258, 480
BpuMI	CCSGG	3 cut(s)	82, 260, 261
BsaHI	GRCGYC	1 cut(s)	452
BsaJI	CCNNGG	3 cut(s)	259, 260, 417
BsaWI	WCCGGW	2 cut(s)	64, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bse118I	RCCGGY	1 cut(s)	362
BseDI	CCNNGG	3 cut(s)	259, 260, 417
BseGI	GGATG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	247
BseX3I	CGGCCG	1 cut(s)	389
BseXI	GCAGC	2 cut(s)	141, 611
Bsh1285I	CGRYCG	1 cut(s)	392
BshFI	GGCC	3 cut(s)	42, 160, 391
BsiEI	CGRYCG	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	404
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	5 cut(s)	65, 81, 260, 269, 363
BslFI	GGGAC	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	390
BsmBI	CGTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	3 cut(s)	42, 160, 391
BsoBI	CYCGRG	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	2 cut(s)	77, 549
BspACI	CCGC	9 cut(s)	6, 70, 132, 135, 138, 328, 360, 442, 479
BspANI	GGCC	3 cut(s)	42, 160, 391
BspLI	GGNNCC	3 cut(s)	79, 203, 267
BspPI	GGATC	2 cut(s)	72, 85
BspQI	GCTCTTC	1 cut(s)	288
BsrBI	CCGCTC	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	362
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	3 cut(s)	259, 260, 417
BssMI	GATC	2 cut(s)	77, 549
BssNI	GRCGYC	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	417
Bst4CI	ACNGT	4 cut(s)	19, 25, 113, 541
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	622
BstEII	GGTNACC	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	372
BstKTI	GATC	2 cut(s)	80, 552
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	2 cut(s)	77, 549
BstMCI	CGRYCG	1 cut(s)	392
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 151
BstPI	GGTNACC	1 cut(s)	19
BstSCI	CCNGG	3 cut(s)	80, 258, 259
BstV1I	GCAGC	2 cut(s)	141, 611
BstV2I	GAAGAC	2 cut(s)	258, 480
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BstZI	CGGCCG	1 cut(s)	389
BsuRI	GGCC	3 cut(s)	42, 160, 391
BtsCI	GGATG	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	622
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	56
Cfr9I	CCCGGG	1 cut(s)	259
CseI	GACGC	1 cut(s)	441
CviAII	CATG	3 cut(s)	517, 533, 569
CviJI	RGCY	9 cut(s)	42, 99, 160, 313, 391, 402, 416, 530, 613
CviKI_1	RGCY	9 cut(s)	42, 99, 160, 313, 391, 402, 416, 530, 613
DpnI	GATC	2 cut(s)	79, 551
DpnII	GATC	2 cut(s)	77, 549
DrdI	GACNNNNNNGTC	1 cut(s)	341
DriI	GACNNNNNGTC	1 cut(s)	481
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	389
EagI	CGGCCG	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	288
Eam1105I	GACNNNNNGTC	1 cut(s)	481
EarI	CTCTTC	1 cut(s)	288
Ecl136II	GAGCTC	1 cut(s)	402
EclXI	CGGCCG	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	56
Eco52I	CGGCCG	1 cut(s)	389
Eco53kI	GAGCTC	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	259
Eco91I	GGTNACC	1 cut(s)	19
EcoICRI	GAGCTC	1 cut(s)	402
EcoO65I	GGTNACC	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	417
Esp3I	CGTCTC	1 cut(s)	390
FaeI	CATG	3 cut(s)	520, 536, 572
FaiI	YATR	9 cut(s)	143, 447, 488, 518, 525, 527, 534, 570, 588
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	3 cut(s)	516, 532, 568
FauI	CCCGC	2 cut(s)	63, 486
Fnu4HI	GCNGC	5 cut(s)	130, 133, 136, 443, 625
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	5 cut(s)	130, 133, 136, 443, 625
FspBI	CTAG	3 cut(s)	48, 332, 506
GluI	GCNGC	5 cut(s)	130, 133, 136, 443, 625
HaeIII	GGCC	3 cut(s)	42, 160, 391
HapII	CCGG	5 cut(s)	65, 81, 260, 269, 363
HgaI	GACGC	1 cut(s)	441
Hin1I	GRCGYC	1 cut(s)	452
Hin1II	CATG	3 cut(s)	520, 536, 572
HinfI	GANTC	3 cut(s)	61, 338, 354
HpaII	CCGG	5 cut(s)	65, 81, 260, 269, 363
HphI	GGTGA	5 cut(s)	31, 349, 377, 544, 553
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	4 cut(s)	60, 225, 457, 646
Hpy188III	TCNNGA	2 cut(s)	346, 408
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	6 cut(s)	310, 347, 409, 457, 469, 550
HpyAV	CCTTC	3 cut(s)	235, 241, 610
HpyCH4III	ACNGT	4 cut(s)	19, 25, 113, 541
HpyCH4IV	ACGT	1 cut(s)	521
HpyCH4V	TGCA	1 cut(s)	568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 151
HpySE526I	ACGT	1 cut(s)	521
Hsp92I	GRCGYC	1 cut(s)	452
Hsp92II	CATG	3 cut(s)	520, 536, 572
Kzo9I	GATC	2 cut(s)	77, 549
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	2 cut(s)	234, 399
LpnPI	CCDG	7 cut(s)	78, 94, 223, 273, 282, 376, 562
Lsp1109I	GCAGC	2 cut(s)	141, 611
MaeI	CTAG	3 cut(s)	48, 332, 506
MaeII	ACGT	1 cut(s)	521
MaeIII	GTNAC	4 cut(s)	19, 535, 541, 572
MalI	GATC	2 cut(s)	79, 551
MbiI	CCGCTC	1 cut(s)	442
MboI	GATC	2 cut(s)	77, 549
MboII	GAAGA	7 cut(s)	134, 263, 296, 299, 302, 305, 485
MfeI	CAATTG	1 cut(s)	563
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	4 cut(s)	85, 147, 458, 563
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	3 cut(s)	73, 400, 435
MnlI	CCTC	6 cut(s)	89, 100, 182, 225, 324, 361
MseI	TTAA	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	5 cut(s)	65, 81, 260, 269, 363
MspR9I	CCNGG	3 cut(s)	82, 260, 261
MunI	CAATTG	1 cut(s)	563
MwoI	GCNNNNNNNGC	2 cut(s)	135, 151
NciI	CCSGG	3 cut(s)	82, 260, 261
NdeII	GATC	2 cut(s)	77, 549
NlaIII	CATG	3 cut(s)	520, 536, 572
NlaIV	GGNNCC	3 cut(s)	79, 203, 267
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	3 cut(s)	19, 535, 541
PciSI	GCTCTTC	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	3 cut(s)	342, 461, 545
PfeI	GAWTC	2 cut(s)	61, 354
PfoI	TCCNGGA	1 cut(s)	80
PkrI	GCNGC	5 cut(s)	131, 134, 137, 444, 626
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PsiI	TTATAA	1 cut(s)	588
Psp124BI	GAGCTC	1 cut(s)	404
PspEI	GGTNACC	1 cut(s)	19
PspN4I	GGNNCC	3 cut(s)	79, 203, 267
PspPI	GGNCC	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	404
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	5 cut(s)	130, 133, 136, 443, 625
Sau3AI	GATC	2 cut(s)	77, 549
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	3 cut(s)	82, 260, 261
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	5 cut(s)	174, 372, 404, 524, 532
SgrAI	CRCCGGYG	1 cut(s)	362
SinI	GGWCC	1 cut(s)	56
SmaI	CCCGGG	1 cut(s)	261
Sse9I	AATT	4 cut(s)	85, 147, 458, 563
SsiI	CCGC	9 cut(s)	6, 70, 132, 135, 138, 328, 360, 442, 479
SspI	AATATT	1 cut(s)	192
SspMI	CTAG	3 cut(s)	48, 332, 506
SstI	GAGCTC	1 cut(s)	404
StyD4I	CCNGG	3 cut(s)	80, 258, 259
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	4 cut(s)	19, 25, 113, 541
TaiI	ACGT	1 cut(s)	524
TaqI	TCGA	2 cut(s)	407, 494
TasI	AATT	4 cut(s)	85, 147, 458, 563
TauI	GCSGC	3 cut(s)	135, 138, 445
TfiI	GAWTC	2 cut(s)	61, 354
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TseFI	GTSAC	3 cut(s)	19, 535, 541
TseI	GCWGC	2 cut(s)	129, 624
Tsp45I	GTSAC	3 cut(s)	19, 535, 541
TspGWI	ACGGA	2 cut(s)	90, 331
TspMI	CCCGGG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XmaI	CCCGGG	1 cut(s)	259
XspI	CTAG	3 cut(s)	48, 332, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.