Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Forward (+)

1449603 .. 1450405

Gene Structure 803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAAATTGAAGCAGAAGAAGAAGAGCAAGTCGCGACGGAGCCTCCCAAAATTCGCCTCCTAGAAGAGTCTGTGGTGAACCGAATCGCTGCCGGCGGGGTCATCCAACGCCCTGTCTCCGCCGTCAAAGAGCTCGTCGAGAACAGCCTCGACGCCCGCTCCTCCTCCATCAACGTCGTCGTCAAGGACGGCGGCCTCAAACTCATCCAAGTCTCCGACGACGGCCAAGGCATACGCTATGAGGACCTGCCGATACCGTGTGAGCAGCAACTCTCGGCGTTTGAGGACTTGCAGTCGATAAAGTCGATGGGGTTCAGAGGAGAAGCACTTGCCAGCATGACATACGTAGCTCATGTCACCGTCACCACCATTACCAAAGGCCAGTTGCATGGCCATAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

134

Amino Acids

14.5

Weight (kDa)

4.84

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	255
AccBSI	CCGCTC	1 cut(s)	159
AccII	CGCG	1 cut(s)	35
AciI	CCGC	4 cut(s)	96, 120, 157, 192
AcoI	YGGCCR	2 cut(s)	223, 391
AcsI	RAATTY	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	11
AhdI	GACNNNNNGTC	1 cut(s)	292
AluBI	AGCT	2 cut(s)	133, 350
AluI	AGCT	2 cut(s)	133, 350
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	121, 217
AoxI	GGCC	4 cut(s)	193, 223, 379, 391
ApeKI	GCWGC	2 cut(s)	89, 265
ApoI	RAATTY	1 cut(s)	51
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	88, 349, 355
AvaII	GGWCC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	76, 277
BccI	CCATC	2 cut(s)	176, 301
BceAI	ACGGC	3 cut(s)	107, 205, 238
BcoDI	GTCTC	2 cut(s)	121, 217
BfaI	CTAG	1 cut(s)	62
BfuAI	ACCTGC	1 cut(s)	255
BisI	GCNGC	3 cut(s)	90, 193, 266
BlsI	GCNGC	3 cut(s)	91, 194, 267
Bme18I	GGWCC	1 cut(s)	244
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	346
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	226
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 58, 143, 173
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	382
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	102, 204
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	3 cut(s)	151, 154, 333
BseXI	GCAGC	2 cut(s)	76, 277
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	4 cut(s)	195, 225, 381, 393
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	93
BsmAI	GTCTC	2 cut(s)	121, 217
BsnI	GGCC	4 cut(s)	195, 225, 381, 393
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	4 cut(s)	96, 120, 157, 192
BspANI	GGCC	4 cut(s)	195, 225, 381, 393
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	255
BspQI	GCTCTTC	1 cut(s)	18
BsrBI	CCGCTC	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	382
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	226
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	258, 361
Bst6I	CTCTTC	2 cut(s)	18, 60
BstACI	GRCGYC	1 cut(s)	153
BstBAI	YACGTR	1 cut(s)	346
BstC8I	GCNNGC	3 cut(s)	94, 157, 334
BstF5I	GGATG	2 cut(s)	102, 204
BstFNI	CGCG	1 cut(s)	35
BstMAI	GTCTC	2 cut(s)	121, 217
BstSNI	TACGTA	1 cut(s)	346
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	76, 277
BstXI	CCANNNNNNTGG	1 cut(s)	389
BsuRI	GGCC	4 cut(s)	195, 225, 381, 393
BtsCI	GGATG	2 cut(s)	102, 204
BtuMI	TCGCGA	1 cut(s)	35
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	3 cut(s)	94, 157, 334
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	161
CviAII	CATG	3 cut(s)	337, 353, 389
CviJI	RGCY	8 cut(s)	43, 133, 147, 195, 225, 350, 381, 393
CviKI_1	RGCY	8 cut(s)	43, 133, 147, 195, 225, 350, 381, 393
DriI	GACNNNNNGTC	1 cut(s)	292
EaeI	YGGCCR	2 cut(s)	223, 391
Eam1104I	CTCTTC	2 cut(s)	18, 60
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	2 cut(s)	18, 60
EciI	GGCGGA	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	133
Eco105I	TACGTA	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	3 cut(s)	340, 356, 392
FaiI	YATR	7 cut(s)	233, 240, 338, 343, 354, 390, 396
FatI	CATG	3 cut(s)	336, 352, 388
FauI	CCCGC	2 cut(s)	89, 164
Fnu4HI	GCNGC	3 cut(s)	90, 193, 266
FokI	GGATG	2 cut(s)	89, 191
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	3 cut(s)	90, 193, 266
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	3 cut(s)	90, 193, 266
HaeIII	GGCC	4 cut(s)	195, 225, 381, 393
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	340, 356, 392
HinfI	GANTC	2 cut(s)	68, 84
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	3 cut(s)	88, 349, 355
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	217, 317
Hpy188III	TCNNGA	2 cut(s)	34, 139
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	7 cut(s)	40, 140, 155, 179, 182, 221, 224
HpyCH4III	ACNGT	2 cut(s)	258, 361
HpyCH4IV	ACGT	2 cut(s)	174, 345
HpyCH4V	TGCA	2 cut(s)	292, 388
HpySE526I	ACGT	2 cut(s)	174, 345
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	340, 356, 392
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	40, 164
LpnPI	CCDG	5 cut(s)	106, 126, 260, 346, 395
Lsp1109I	GCAGC	2 cut(s)	76, 277
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	2 cut(s)	174, 345
MaeIII	GTNAC	2 cut(s)	355, 361
MbiI	CCGCTC	1 cut(s)	159
MboII	GAAGA	4 cut(s)	29, 32, 35, 77
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	2 cut(s)	6, 51
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	130, 240
MnlI	CCTC	9 cut(s)	54, 68, 158, 172, 175, 206, 235, 277, 311
Mox20I	TGGCCA	1 cut(s)	393
MroNI	GCCGGC	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	393
MspI	CCGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	35
NaeI	GCCGGC	1 cut(s)	94
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	3 cut(s)	340, 356, 392
NlaIV	GGNNCC	1 cut(s)	42
NmeAIII	GCCGAG	1 cut(s)	254
NmuCI	GTSAC	2 cut(s)	355, 361
NruI	TCGCGA	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	91, 194, 267
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	346
PpuMI	RGGWCCY	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	244
PspPPI	RGGWCCY	1 cut(s)	244
RruI	TCGCGA	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	18
SatI	GCNGC	3 cut(s)	90, 193, 266
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	5 cut(s)	135, 177, 249, 348, 352
SinI	GGWCC	1 cut(s)	244
SnaBI	TACGTA	1 cut(s)	346
Sse9I	AATT	2 cut(s)	6, 51
SsiI	CCGC	4 cut(s)	96, 120, 157, 192
SspMI	CTAG	1 cut(s)	62
SstI	GAGCTC	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	258, 361
TaiI	ACGT	2 cut(s)	177, 348
TaqI	TCGA	4 cut(s)	138, 150, 296, 305
TasI	AATT	2 cut(s)	6, 51
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	84
TseFI	GTSAC	2 cut(s)	355, 361
TseI	GCWGC	2 cut(s)	89, 265
Tsp45I	GTSAC	2 cut(s)	355, 361
TspGWI	ACGGA	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	1 cut(s)	51
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.