Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Reverse (-)

50297789 .. 50298189

Gene Structure 401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20323

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAAATGGAAGAAGAAGAAGAAGAGCAAGTGGCGACGAAGCCTCCCAAAATTCACCGCCTAGACGAGTCCGTCGTGAACCGAATCGCCGCCGGTGAATCCAACGCCCCGTCTCTGCCGTCAAGGAGCTCGTCGAGAACAGCCTCGACGCCCACTCCTCCTCCATTAACGTCGTCGTCAAGGACGGCGGCCTCAAGCTCATCCAAGTCTCCGACGACGGCCACGGAATTTTATCTACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

80

Amino Acids

8.55

Weight (kDa)

5.05

Isoelectric Point (pI)

93.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AciI	CCGC	3 cut(s)	58, 90, 188
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	2 cut(s)	51, 227
AcyI	GRCGYC	1 cut(s)	149
AluBI	AGCT	2 cut(s)	129, 198
AluI	AGCT	2 cut(s)	129, 198
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	2 cut(s)	117, 213
AoxI	GGCC	2 cut(s)	189, 219
ApoI	RAATTY	2 cut(s)	51, 227
AsuHPI	GGTGA	2 cut(s)	47, 107
BanII	GRGCYC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	131
BceAI	ACGGC	3 cut(s)	103, 201, 234
BcoDI	GTCTC	2 cut(s)	117, 213
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	239
BisI	GCNGC	2 cut(s)	90, 189
BlsI	GCNGC	2 cut(s)	91, 190
BpuEI	CTTGAG	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	222
BsaXI	ACNNNNNCTCC	6 cut(s)	28, 58, 139, 145, 169, 175
Bse118I	RCCGGY	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	200
BseRI	GAGGAG	2 cut(s)	147, 150
BshFI	GGCC	2 cut(s)	191, 221
BsiHKAI	GWGCWC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	93
BsmAI	GTCTC	2 cut(s)	117, 213
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	191, 221
Bsp1286I	GDGCHC	1 cut(s)	131
BspACI	CCGC	3 cut(s)	58, 90, 188
BspANI	GGCC	2 cut(s)	191, 221
BspQI	GCTCTTC	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	222
BssNI	GRCGYC	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	149
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	200
BstMAI	GTCTC	2 cut(s)	117, 213
BstSFI	CTRYAG	1 cut(s)	239
BsuRI	GGCC	2 cut(s)	191, 221
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	92
CseI	GACGC	1 cut(s)	157
CviJI	RGCY	6 cut(s)	43, 129, 143, 191, 198, 221
CviKI_1	RGCY	6 cut(s)	43, 129, 143, 191, 198, 221
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	90, 189
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	90, 189
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	2 cut(s)	90, 189
HaeIII	GGCC	2 cut(s)	191, 221
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	157
Hin1I	GRCGYC	1 cut(s)	149
HinfI	GANTC	3 cut(s)	68, 84, 98
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	47, 107
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	2 cut(s)	76, 135
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	8 cut(s)	40, 77, 136, 151, 175, 178, 217, 220
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	1 cut(s)	170
HpySE526I	ACGT	1 cut(s)	170
Hsp92I	GRCGYC	1 cut(s)	149
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	1 cut(s)	126
LpnPI	CCDG	1 cut(s)	106
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	1 cut(s)	170
MboII	GAAGA	5 cut(s)	23, 26, 29, 32, 35
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	2 cut(s)	51, 227
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	126, 236
MnlI	CCTC	5 cut(s)	54, 154, 168, 171, 202
MseI	TTAA	1 cut(s)	167
MspI	CCGG	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	84, 98
PkrI	GCNGC	2 cut(s)	91, 190
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	2 cut(s)	90, 189
SchI	GAGTC	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	3 cut(s)	131, 173, 200
SfcI	CTRYAG	1 cut(s)	239
SgrAI	CRCCGGYG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	2 cut(s)	51, 227
SsiI	CCGC	3 cut(s)	58, 90, 188
SspMI	CTAG	1 cut(s)	62
SstI	GAGCTC	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	1 cut(s)	173
TaqI	TCGA	2 cut(s)	134, 146
TasI	AATT	2 cut(s)	51, 227
TauI	GCSGC	2 cut(s)	92, 191
TfiI	GAWTC	2 cut(s)	84, 98
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TspGWI	ACGGA	2 cut(s)	61, 239
XapI	RAATTY	2 cut(s)	51, 227
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.