Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Reverse (-)

47451526 .. 47455489

Gene Structure 3964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAAGAAGAAGAAGAAGAAGAAGAGCAAGTGGCGACGGAACCTCCCAAAATTCACCGCCTAGACGAGTTCGTAGTGAACCGAATCACCGCCGGTGAGGTCATCCAACGCCCCGTCTCCGCCATCAAGGAGCTCGTCAAGAACAGCCTCGACGCCCACTCCTCCTCCATTAACGTCGTCGTCAAGGACAGCGGCCACGGAATCCGATATGAGGACTTGCCGATACTGTGCGAGCGACATACGACGTCGAAATTGTCGTCGTTTGAGGACCTGCAATCCATAAAGTCGGTGGGGTTTCTAGGAGAAGCTCTTGCGAGCATGAAATATGTGGCTCATGTGACGGTGACGACGATCACCAAAGGGCAGTTGCATGATGGAGTGATGGAGCATGAGCCGAAGGCGTGTGCTGCCGTAAAAGGAACTCAGATAATGTTTCAGTTAGGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

149

Amino Acids

16.44

Weight (kDa)

5.22

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c_3	PF13589	40 - 123	3.6e-08	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	279
AciI	CCGC	4 cut(s)	58, 90, 120, 192
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	51
AcyI	GRCGYC	2 cut(s)	153, 245
AfiI	CCNNNNNNNGG	1 cut(s)	211
AluBI	AGCT	2 cut(s)	133, 308
AluI	AGCT	2 cut(s)	133, 308
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	121
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	51
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	5 cut(s)	47, 79, 107, 346, 355
AvaII	GGWCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	3 cut(s)	131, 368, 376
BceAI	ACGGC	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	2 cut(s)	62, 299
BfuAI	ACCTGC	1 cut(s)	279
BisI	GCNGC	2 cut(s)	193, 408
BlsI	GCNGC	2 cut(s)	194, 409
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	42
BsaHI	GRCGYC	2 cut(s)	153, 245
BsaJI	CCNNGG	1 cut(s)	196
BsaXI	ACNNNNNCTCC	6 cut(s)	28, 58, 143, 149, 173, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	437
BseRI	GAGGAG	2 cut(s)	151, 154
BseXI	GCAGC	1 cut(s)	394
BshFI	GGCC	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	121
BsmBI	CGTCTC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	351
BspACI	CCGC	4 cut(s)	58, 90, 120, 192
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	279
BspQI	GCTCTTC	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	351
BssNI	GRCGYC	2 cut(s)	153, 245
Bst4CI	ACNGT	2 cut(s)	228, 343
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	2 cut(s)	153, 245
BstC8I	GCNNGC	2 cut(s)	233, 316
BstDEI	CTNAG	1 cut(s)	423
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	354
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstV1I	GCAGC	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	195
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	102
BveI	ACCTGC	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	233, 316
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	268
CseI	GACGC	1 cut(s)	161
CviAII	CATG	4 cut(s)	319, 335, 371, 389
CviJI	RGCY	6 cut(s)	133, 147, 195, 308, 332, 394
CviKI_1	RGCY	6 cut(s)	133, 147, 195, 308, 332, 394
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EciI	GGCGGA	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	135
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	4 cut(s)	322, 338, 374, 392
FaiI	YATR	8 cut(s)	210, 240, 281, 320, 327, 336, 372, 390
FatI	CATG	4 cut(s)	318, 334, 370, 388
Fnu4HI	GCNGC	2 cut(s)	193, 408
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	193, 408
FspBI	CTAG	2 cut(s)	62, 299
GluI	GCNGC	2 cut(s)	193, 408
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	161
Hin1I	GRCGYC	2 cut(s)	153, 245
Hin1II	CATG	4 cut(s)	322, 338, 374, 392
HinfI	GANTC	2 cut(s)	84, 201
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	5 cut(s)	47, 79, 107, 346, 355
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	206, 426
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	8 cut(s)	40, 155, 179, 182, 247, 250, 262, 352
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	2 cut(s)	228, 343
HpyCH4IV	ACGT	2 cut(s)	174, 245
HpyCH4V	TGCA	2 cut(s)	274, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	2 cut(s)	174, 245
Hsp92I	GRCGYC	2 cut(s)	153, 245
Hsp92II	CATG	4 cut(s)	322, 338, 374, 392
Kzo9I	GATC	1 cut(s)	351
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	130, 385
LpnPI	CCDG	2 cut(s)	106, 284
Lsp1109I	GCAGC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	62, 299
MaeII	ACGT	2 cut(s)	174, 245
MaeIII	GTNAC	2 cut(s)	337, 343
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	7 cut(s)	17, 20, 23, 26, 29, 32, 35
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	2 cut(s)	51, 251
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	7 cut(s)	54, 91, 158, 172, 175, 205, 259
MseI	TTAA	2 cut(s)	171, 448
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	407
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	4 cut(s)	322, 338, 374, 392
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	2 cut(s)	337, 343
PciSI	GCTCTTC	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	2 cut(s)	254, 347
PfeI	GAWTC	2 cut(s)	84, 201
PkrI	GCNGC	2 cut(s)	194, 409
PpuMI	RGGWCCY	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	268
PspPPI	RGGWCCY	1 cut(s)	268
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	171, 448
SatI	GCNGC	2 cut(s)	193, 408
Sau3AI	GATC	1 cut(s)	351
Sau96I	GGNCC	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	7 cut(s)	46, 102, 135, 177, 248, 273, 310
SgrAI	CRCCGGYG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	268
Sse9I	AATT	2 cut(s)	51, 251
SsiI	CCGC	4 cut(s)	58, 90, 120, 192
SspMI	CTAG	2 cut(s)	62, 299
SstI	GAGCTC	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	228, 343
TaiI	ACGT	2 cut(s)	177, 248
TaqI	TCGA	2 cut(s)	150, 248
TasI	AATT	2 cut(s)	51, 251
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	2 cut(s)	84, 201
Tru1I	TTAA	2 cut(s)	171, 448
Tru9I	TTAA	2 cut(s)	171, 448
TseFI	GTSAC	2 cut(s)	337, 343
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	2 cut(s)	337, 343
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	2 cut(s)	53, 213
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	1 cut(s)	51
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	2 cut(s)	62, 299
ZraI	GACGTC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.