Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Reverse (-)

40303770 .. 40308887

Gene Structure 5118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG374700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAAGAAGAAGAAGAAGAAGAGCAAGTGGCGACGGAGCCTCCCAAAATTCACCGCCTAGACGAGTCCGTAGTGAACCGAATCGGCGCCGGTGAGGTCATCCAACGCCCCGTCTCGGCCGTCAAGGAGCTCGTCGAGAACAGCCTCGACGCCCACTCCTCCTCCATCAACGTCGTCGTCAAGGACGGCGGCCTCAAACTCATCCAAGTCTCCGACGACGGCCACGGAATCCGATATGAGGACTTGCCGATACTGTGCGAGCGGCATACGACGTCGAAATTGTCGTCGTTTGAAGACCTGCAGTCCATAAAGTCGATGGGGTTTCGAGGAGAAGCTCTTGCGAGCATGACGCATGTGACTCATGTGACGGTGACGACGATCACCAAAGGGCAGTTGCATGGTTATAGGGTCTCTTATAAAGATGGAGTGATAGAGCATGAGCCGAAGGCGTGCGCTGCCGTAAAAGGAACTCAGATAATGATTGAGAACTTATTCTATAACATGTCTGCCTGGAGAAAGAATCTGCAAAACTCTGCTGATGATTTTTCAAAGATTGTAGATTTGTTAAGCCGGTTTGCCATTCATCACACAAGTGTTAGCTTCTCCTGCAGAAAGCATGATATGGAGCCGGTAGAGCAGATGTTAGTTCTGTTGCCACATTATCAAGAATTGATGCGATTCGTTCAGTTTATGGGGTGTCAGTTGCCCGCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

238

Amino Acids

26.76

Weight (kDa)

5.62

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	36 - 99	1.1e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	39 - 141	7.6e-15	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AatII	GACGTC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	306
AccB1I	GGYRCC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	262
AciI	CCGC	4 cut(s)	55, 189, 262, 708
AcoI	YGGCCR	2 cut(s)	117, 220
AcsI	RAATTY	1 cut(s)	48
AcyI	GRCGYC	3 cut(s)	87, 150, 272
AfiI	CCNNNNNNNGG	2 cut(s)	115, 238
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	2 cut(s)	293, 549
AhdI	GACNNNNNGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	509
AleI	CACNNNNGTG	1 cut(s)	591
AluBI	AGCT	3 cut(s)	130, 335, 600
AluI	AGCT	3 cut(s)	130, 335, 600
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	3 cut(s)	118, 214, 415
AoxI	GGCC	3 cut(s)	117, 190, 220
ApeKI	GCWGC	1 cut(s)	455
ApoI	RAATTY	1 cut(s)	48
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
Asp700I	GAANNNNTTC	1 cut(s)	491
AspLEI	GCGC	2 cut(s)	89, 455
AsuHPI	GGTGA	4 cut(s)	44, 104, 373, 382
BanI	GGYRCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	3 cut(s)	173, 310, 416
BceAI	ACGGC	4 cut(s)	104, 202, 235, 443
BciT130I	CCWGG	1 cut(s)	511
BcoDI	GTCTC	3 cut(s)	118, 214, 415
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	2 cut(s)	299, 607
BfoI	RGCGCY	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	306
BisI	GCNGC	3 cut(s)	190, 263, 456
BlsI	GCNGC	3 cut(s)	191, 264, 457
Bme1390I	CCNGG	1 cut(s)	511
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmiI	GGNNCC	3 cut(s)	39, 88, 627
BmrFI	CCNGG	1 cut(s)	511
BmsI	GCATC	1 cut(s)	663
BpiI	GAAGAC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	532
BsaHI	GRCGYC	3 cut(s)	87, 150, 272
BsaI	GGTCTC	1 cut(s)	415
BsaJI	CCNNGG	1 cut(s)	223
BsaXI	ACNNNNNCTCC	6 cut(s)	25, 55, 140, 146, 170, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 238
Bse118I	RCCGGY	3 cut(s)	89, 570, 628
BseBI	CCWGG	1 cut(s)	511
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	2 cut(s)	99, 201
BseLI	CCNNNNNNNGG	2 cut(s)	115, 238
BseMII	CTCAG	1 cut(s)	485
BseRI	GAGGAG	3 cut(s)	148, 151, 342
BseX3I	CGGCCG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	442
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	3 cut(s)	119, 192, 222
BshNI	GGYRCC	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	3 cut(s)	90, 571, 629
BslI	CCNNNNNNNGG	2 cut(s)	115, 238
BsmAI	GTCTC	3 cut(s)	118, 214, 415
BsmBI	CGTCTC	1 cut(s)	118
BsnI	GGCC	3 cut(s)	119, 192, 222
Bso31I	GGTCTC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	378
BspACI	CCGC	4 cut(s)	55, 189, 262, 708
BspANI	GGCC	3 cut(s)	119, 192, 222
BspCNI	CTCAG	1 cut(s)	484
BspLI	GGNNCC	3 cut(s)	39, 88, 627
BspMAI	CTGCAG	2 cut(s)	303, 611
BspMI	ACCTGC	1 cut(s)	306
BspQI	GCTCTTC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	415
BsrBI	CCGCTC	1 cut(s)	262
BsrFI	RCCGGY	3 cut(s)	89, 570, 628
BssAI	RCCGGY	3 cut(s)	89, 570, 628
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	378
BssNI	GRCGYC	3 cut(s)	87, 150, 272
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	2 cut(s)	255, 370
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	3 cut(s)	87, 150, 272
BstC8I	GCNNGC	4 cut(s)	260, 343, 451, 708
BstDEI	CTNAG	1 cut(s)	471
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	99, 201
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	2 cut(s)	89, 455
BstKTI	GATC	1 cut(s)	381
BstMAI	GTCTC	3 cut(s)	118, 214, 415
BstMBI	GATC	1 cut(s)	378
BstMCI	CGRYCG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 606, 634
BstNI	CCWGG	1 cut(s)	511
BstNSI	RCATGY	2 cut(s)	356, 505
BstSCI	CCNGG	1 cut(s)	509
BstSFI	CTRYAG	2 cut(s)	299, 607
BstV1I	GCAGC	1 cut(s)	442
BstV2I	GAAGAC	1 cut(s)	300
BstZI	CGGCCG	1 cut(s)	117
BsuRI	GGCC	3 cut(s)	119, 192, 222
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	99, 201
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	4 cut(s)	260, 343, 451, 708
CfoI	GCGC	2 cut(s)	89, 455
Cfr10I	RCCGGY	3 cut(s)	89, 570, 628
CseI	GACGC	2 cut(s)	158, 358
CviAII	CATG	7 cut(s)	346, 353, 362, 398, 437, 502, 617
DdeI	CTNAG	1 cut(s)	471
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
DriI	GACNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	2 cut(s)	117, 220
EagI	CGGCCG	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	15
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	130
EclXI	CGGCCG	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	415
Eco52I	CGGCCG	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	132
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	7 cut(s)	349, 356, 365, 401, 440, 505, 620
FatI	CATG	7 cut(s)	345, 352, 361, 397, 436, 501, 616
FauI	CCCGC	1 cut(s)	715
Fnu4HI	GCNGC	3 cut(s)	190, 263, 456
FokI	GGATG	2 cut(s)	86, 188
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	3 cut(s)	190, 263, 456
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	2 cut(s)	88, 454
GluI	GCNGC	3 cut(s)	190, 263, 456
GsuI	CTGGAG	1 cut(s)	532
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	3 cut(s)	119, 192, 222
HapII	CCGG	3 cut(s)	90, 571, 629
HgaI	GACGC	2 cut(s)	158, 358
HhaI	GCGC	2 cut(s)	89, 455
Hin1I	GRCGYC	3 cut(s)	87, 150, 272
Hin1II	CATG	7 cut(s)	349, 356, 365, 401, 440, 505, 620
Hin6I	GCGC	2 cut(s)	87, 453
HinP1I	GCGC	2 cut(s)	87, 453
HinfI	GANTC	6 cut(s)	65, 81, 228, 358, 520, 678
HpaII	CCGG	3 cut(s)	90, 571, 629
HphI	GGTGA	4 cut(s)	44, 104, 373, 382
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	4 cut(s)	214, 233, 474, 716
Hpy188III	TCNNGA	2 cut(s)	136, 665
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	2 cut(s)	255, 370
HpyCH4IV	ACGT	2 cut(s)	171, 272
HpyCH4V	TGCA	4 cut(s)	301, 397, 526, 609
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 606, 634
HpyF3I	CTNAG	1 cut(s)	471
HpySE526I	ACGT	2 cut(s)	171, 272
Hsp92I	GRCGYC	3 cut(s)	87, 150, 272
Hsp92II	CATG	7 cut(s)	349, 356, 365, 401, 440, 505, 620
HspAI	GCGC	2 cut(s)	87, 453
KasI	GGCGCC	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	378
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	3 cut(s)	37, 127, 625
LpnPI	CCDG	7 cut(s)	103, 311, 496, 523, 584, 619, 642
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	1 cut(s)	663
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	2 cut(s)	171, 272
MaeIII	GTNAC	3 cut(s)	355, 364, 370
MalI	GATC	1 cut(s)	380
MbiI	CCGCTC	1 cut(s)	262
MboI	GATC	1 cut(s)	378
MboII	GAAGA	7 cut(s)	17, 20, 23, 26, 29, 32, 305
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	3 cut(s)	48, 278, 668
Mly113I	GGCGCC	1 cut(s)	87
MlyI	GAGTC	2 cut(s)	74, 352
MmeI	TCCRAC	2 cut(s)	127, 237
MnlI	CCTC	8 cut(s)	51, 88, 155, 169, 172, 203, 232, 320
MroXI	GAANNNNTTC	1 cut(s)	491
MseI	TTAA	1 cut(s)	566
MslI	CAYNNNNRTG	1 cut(s)	591
MspI	CCGG	3 cut(s)	90, 571, 629
MspR9I	CCNGG	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	511
MwoI	GCNNNNNNNGC	3 cut(s)	455, 606, 634
NarI	GGCGCC	1 cut(s)	87
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	7 cut(s)	349, 356, 365, 401, 440, 505, 620
NlaIV	GGNNCC	3 cut(s)	39, 88, 627
NmeAIII	GCCGAG	1 cut(s)	95
NmuCI	GTSAC	3 cut(s)	355, 364, 370
NspI	RCATGY	2 cut(s)	356, 505
OliI	CACNNNNGTG	1 cut(s)	591
PciI	ACATGT	1 cut(s)	501
PciSI	GCTCTTC	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	2 cut(s)	281, 374
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	4 cut(s)	81, 228, 520, 678
PkrI	GCNGC	3 cut(s)	191, 264, 457
PleI	GAGTC	2 cut(s)	73, 352
PluTI	GGCGCC	1 cut(s)	90
PpsI	GAGTC	2 cut(s)	73, 352
PscI	ACATGT	1 cut(s)	501
PsiI	TTATAA	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	3 cut(s)	39, 88, 627
PstI	CTGCAG	2 cut(s)	303, 611
RseI	CAYNNNNRTG	1 cut(s)	591
SacI	GAGCTC	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	3 cut(s)	190, 263, 456
Sau3AI	GATC	1 cut(s)	378
SchI	GAGTC	2 cut(s)	74, 352
ScrFI	CCNGG	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	7 cut(s)	99, 132, 174, 275, 300, 337, 602
SfaNI	GCATC	1 cut(s)	663
SfcI	CTRYAG	2 cut(s)	299, 607
SfoI	GGCGCC	1 cut(s)	88
SgrAI	CRCCGGYG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	591
Sse9I	AATT	3 cut(s)	48, 278, 668
SsiI	CCGC	4 cut(s)	55, 189, 262, 708
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	509
TaaI	ACNGT	2 cut(s)	255, 370
TaiI	ACGT	2 cut(s)	174, 275
TaqI	TCGA	5 cut(s)	135, 147, 275, 314, 325
TasI	AATT	3 cut(s)	48, 278, 668
TauI	GCSGC	2 cut(s)	192, 265
TfiI	GAWTC	4 cut(s)	81, 228, 520, 678
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TseFI	GTSAC	3 cut(s)	355, 364, 370
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	3 cut(s)	355, 364, 370
TspDTI	ATGAA	1 cut(s)	572
TspGWI	ACGGA	3 cut(s)	50, 58, 240
XapI	RAATTY	1 cut(s)	48
XceI	RCATGY	2 cut(s)	356, 505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.