Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000356.1

Orthogroup ID

OG0001742

Physical Location & Seq

Genomic Coordinates Reverse (-)

73893 .. 85971

Gene Structure 12079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000356.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2337 bp

atgactgactcggattccgtggccgtcgtcggagacttggatgagcttgaggccgccgtccttgacgacgacgttaatggaggaggagtgggcgtcgaggctgttctcgacgagctccttgacggcagagacggggcgttggatgacctcaccggcggcgattcggttcactacggactcactgaaacgaaaagggaaagggaaatggaaggagaagagcgagtggcgacggagcctcccaaaattcaccgcctagacgagtccgtagtgaaccgaatcgccgccggtgaggtcatccaacgccccgtctctgccgtcaaggagctcgtcgagaacagcctcgacgcccactcctcctccattaacgtcgtcgtcaaggacggcggcctcaagctcatccaagtctccgacgacggccacggaatccgatctgctgtagtaggaggacttgccgataatgtgcgagcggcatacgacgtcgaaattgtcgtccatggttatagggtctcctataaagatggagtgatggagcatgagccgaaggcgtgcgctgccgtaaaaggaactcagataatgattgagaacttattctataacatgtctgcccggagaaagaatctgcaaaactctgctgatgattattcaaagattgtagatttgttaagccggtttgccattcatcacacaagtgttagcttctcctgcagaaagcatggagccggtagagcagatgttagttctgttgccacattatcaagaattgatgcgattcgttcagtttatggggtgtcagttgcccgcagtctgatgaaagttgaagctttggacaatgatccgtcgagctcagttttccagatggatggctttatctccaattccgaatatgttgcgaagaagataactatggtgctttttataaacgatagattggtggattgcactgcattgaagagagctctggaaattgtttatgctgctacattgccgaaagcatcaaaacccttcatatacatgtcaattgtattaccacctgaacgtgttgatgtgaatgttcacccgacaaagagggaggtgagtcttctgaatcaggaagtcatcattgagaagatacagtcagtggttgaatcaagattgagaagctccaatgagacacagatatttcgggggcagacagttgaaccaccttcatccagccaaatgatttctagcaaggattcaaatcgaaatcctttggcatctggatcaaaatcacaaaaggttccagtgaataaaatggtcagaacagattcatcggatcctgctggaaggttgcatatttacttgcacgcagagcctcgtggccatcttgaaaagaatactagcttgactgctgttagatcgtctgttagacaaagaaggaacccaaaggaaacggctgatctgagtagcattcaggagcttattgctgaaattgatagcaattgtcattctggtatgttagacattgtgagaaactgcacatacattggaatggcagatgacgtctttgcattgcttcagcatgatacacacctctaccttgcaaatgtagtaagcttgagcaaagagctcatgtatcagcaagttctacgtcgatttgctcattttaatgctatacaattaagtaacccagccccgctgaaggagttgattgtgttggcactgaaagagggggacacagatccagaatccactgagaatgatgaactaaatgagaagattgcagaaatgaatacagaactacttaagcaaaaggctgatctagtagaggagtacttttccattcacatagataaagatggaaatttgtccaggcttccggtaatacttgaccaatacacacctgacatggatcgtgtcccagaatttgtgctttgtttgggcaacgatgttgattcggaagaagagaaaaaatgcttccaagtaatttcagctgcacttgggaacttttatgccatgcatcctcctatattacccaacccatctggtgatggtttgcaattttaccaaaaaaggaagttggtcaggaataatgaaggaagtctctcttgcaatacagctgcggatgatatgatgatggaggatgaaatccagcatgaactagttgcagaggcagagactgcatgggcacagcgcgaatggttgatccagcatgtattgtttccatcaatgaggctcttttttaagccaccaaattctatggctacaaatggaacatttgttcgagtaagttacttttcttgggataccttaatttacttgattcttgagttaacacaagaagtcagtaaactcatgtatgatgagctagctgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

778

Amino Acids

86.36

Weight (kDa)

5.05

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G09140 AT4G09140
fragaria_vesca	FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560 FvH4_5g31560
malus_domestica	MD12G1033300.v1.1 MD14G1034200.v1.1
prunus_persica	Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1 Prupe.1G555900_v2.0.a1
pyrus_communis	pycom12g01730 pycom12g03050
rosa_chinensis	RchiOBHm_Chr3g0494621 RchiOBHm_Chr7g0226931 RchiOBHm_Chr7g0226941
rosa_laevigata	RLG00000001681
rosa_multiflora	Rmu_co8507019.1_g000001 Rmu_sc0000356.1_g000011 Rmu_sc0002762.1_g000004 Rmu_sc0008925.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018710 Rroxscaffold_3G00232410 Rroxscaffold_6G00391010
rosa_rugosa	Rorug03G0266200 Rorug07G0240400
rosa_samantha	Rh3AG316100 Rh3BG351600 Rh3CG348200 Rh3DG350800 Rh7AG388700 Rh7BG374500 Rh7BG374700 Rh7CG407900 Rh7DG386700
rosa_wichuraiana	Rw3G027600 Rw7G032590 Rw7G032610 Rw7G032620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	917
AatII	GACGTC	2 cut(s)	480, 1524
AccBSI	CCGCTC	1 cut(s)	467
AccII	CGCG	1 cut(s)	2154
AciI	CCGC	9 cut(s)	54, 156, 250, 282, 384, 467, 799, 1655, 2081
AclWI	GGATC	7 cut(s)	827, 1249, 1289, 1302, 1694, 1878, 2158
AcoI	YGGCCR	3 cut(s)	21, 415, 1339
AcsI	RAATTY	4 cut(s)	243, 1822, 1883, 2212
AcuI	CTGAAG	2 cut(s)	1520, 1679
AcyI	GRCGYC	4 cut(s)	93, 345, 477, 1521
AfaI	GTAC	1 cut(s)	1793
AfiI	CCNNNNNNNGG	1 cut(s)	1660
AflII	CTTAAG	1 cut(s)	1763
AflIII	ACRYGT	3 cut(s)	597, 1011, 1036
AgsI	TTSAA	7 cut(s)	645, 818, 949, 1124, 1178, 1218, 1349
AhlI	ACTAGT	1 cut(s)	2119
AjnI	CCWGG	1 cut(s)	1829
AleI	CACNNNNGTG	1 cut(s)	687
AloI	GAACNNNNNNTCC	2 cut(s)	2223, 2255
Alw21I	GWGCWC	5 cut(s)	117, 327, 845, 958, 1590
Alw26I	GTCTC	8 cut(s)	27, 123, 313, 409, 511, 1142, 2066, 2129
AlwI	GGATC	7 cut(s)	827, 1249, 1289, 1302, 1694, 1878, 2158
AlwNI	CAGNNNCTG	1 cut(s)	2138
AoxI	GGCC	5 cut(s)	21, 51, 385, 415, 1339
ApeKI	GCWGC	4 cut(s)	551, 974, 1952, 2078
ApoI	RAATTY	4 cut(s)	243, 1822, 1883, 2212
ArsI	GACNNNNNNTTYG	2 cut(s)	474, 506
Asp700I	GAANNNNTTC	2 cut(s)	587, 1285
AspLEI	GCGC	2 cut(s)	551, 2154
AsuC2I	CCSGG	1 cut(s)	607
AsuHPI	GGTGA	6 cut(s)	142, 239, 299, 1046, 1084, 2018
AsuNHI	GCTAGC	1 cut(s)	2326
BaeGI	GKGCMC	1 cut(s)	2149
BalI	TGGCCA	1 cut(s)	1341
BamHI	GGATCC	1 cut(s)	1294
BanII	GRGCYC	5 cut(s)	117, 327, 845, 958, 1590
BauI	CACGAG	1 cut(s)	1335
BbsI	GAAGAC	1 cut(s)	1070
Bbv12I	GWGCWC	5 cut(s)	117, 327, 845, 958, 1590
BbvI	GCAGC	4 cut(s)	538, 961, 1939, 2065
BceAI	ACGGC	8 cut(s)	8, 41, 139, 299, 397, 430, 539, 1428
BcgI	CGANNNNNNTGC	2 cut(s)	869, 903
BciT130I	CCWGG	1 cut(s)	1831
BciVI	GTATCC	1 cut(s)	2257
BcnI	CCSGG	1 cut(s)	607
BcoDI	GTCTC	8 cut(s)	27, 123, 313, 409, 511, 1142, 2066, 2129
BcuI	ACTAGT	1 cut(s)	2119
BfaI	CTAG	6 cut(s)	254, 1206, 1359, 1781, 2120, 2327
BfmI	CTRYAG	2 cut(s)	435, 703
BfrI	CTTAAG	1 cut(s)	1763
BfuI	GTATCC	1 cut(s)	2257
BisI	GCNGC	9 cut(s)	54, 157, 282, 385, 468, 552, 975, 1953, 2079
BlsI	GCNGC	9 cut(s)	55, 158, 283, 386, 469, 553, 976, 1954, 2080
BmcAI	AGTACT	1 cut(s)	1793
Bme1390I	CCNGG	2 cut(s)	607, 1831
BmiI	GGNNCC	5 cut(s)	234, 718, 1260, 1296, 1400
BmrFI	CCNGG	2 cut(s)	607, 1831
BmsI	GCATC	4 cut(s)	754, 1001, 1244, 1987
BmtI	GCTAGC	1 cut(s)	2330
BpiI	GAAGAC	1 cut(s)	1070
BpuEI	CTTGAG	4 cut(s)	68, 374, 1597, 2306
BpuMI	CCSGG	1 cut(s)	607
BsaBI	GATNNNNATC	2 cut(s)	1218, 1246
BsaHI	GRCGYC	4 cut(s)	93, 345, 477, 1521
BsaI	GGTCTC	1 cut(s)	511
BsaJI	CCNNGG	3 cut(s)	18, 418, 493
BsaWI	WCCGGW	1 cut(s)	1837
Bsc4I	CCNNNNNNNGG	1 cut(s)	1660
Bse118I	RCCGGY	4 cut(s)	152, 284, 666, 719
Bse1I	ACTGG	1 cut(s)	1262
Bse3DI	GCAATG	2 cut(s)	980, 1529
Bse8I	GATNNNNATC	2 cut(s)	1218, 1246
BseBI	CCWGG	1 cut(s)	1831
BseDI	CCNNGG	3 cut(s)	18, 418, 493
BseGI	GGATG	9 cut(s)	46, 148, 294, 396, 865, 1187, 1978, 2089, 2107
BseJI	GATNNNNATC	2 cut(s)	1218, 1246
BseLI	CCNNNNNNNGG	1 cut(s)	1660
BseMI	GCAATG	2 cut(s)	980, 1529
BseMII	CTCAG	4 cut(s)	581, 858, 1412, 1704
BseNI	ACTGG	1 cut(s)	1262
BseRI	GAGGAG	5 cut(s)	96, 99, 343, 346, 1802
BseSI	GKGCMC	1 cut(s)	2149
BseXI	GCAGC	4 cut(s)	538, 961, 1939, 2065
BseYI	CCCAGC	2 cut(s)	1648, 2330
BsgI	GTGCAG	2 cut(s)	1480, 1938
Bsh1236I	CGCG	1 cut(s)	2154
BshFI	GGCC	5 cut(s)	23, 53, 387, 417, 1341
BsiHKAI	GWGCWC	5 cut(s)	117, 327, 845, 958, 1590
BsiSI	CCGG	6 cut(s)	153, 285, 607, 667, 720, 1838
BslFI	GGGAC	2 cut(s)	1706, 1862
BslI	CCNNNNNNNGG	1 cut(s)	1660
BsmAI	GTCTC	8 cut(s)	27, 123, 313, 409, 511, 1142, 2066, 2129
BsmBI	CGTCTC	2 cut(s)	123, 313
BsmFI	GGGAC	2 cut(s)	1706, 1862
BsmI	GAATGC	1 cut(s)	1428
BsnI	GGCC	5 cut(s)	23, 53, 387, 417, 1341
Bso31I	GGTCTC	1 cut(s)	511
Bsp1286I	GDGCHC	6 cut(s)	117, 327, 845, 958, 1590, 2149
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	9 cut(s)	54, 156, 250, 282, 384, 467, 799, 1655, 2081
BspANI	GGCC	5 cut(s)	23, 53, 387, 417, 1341
BspCNI	CTCAG	4 cut(s)	580, 857, 1413, 1705
BspFNI	CGCG	1 cut(s)	2154
BspLI	GGNNCC	5 cut(s)	234, 718, 1260, 1296, 1400
BspMAI	CTGCAG	1 cut(s)	707
BspOI	GCTAGC	1 cut(s)	2330
BspPI	GGATC	7 cut(s)	827, 1249, 1289, 1302, 1694, 1878, 2158
BspQI	GCTCTTC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	1763
BspTNI	GGTCTC	1 cut(s)	511
BsrBI	CCGCTC	1 cut(s)	467
BsrDI	GCAATG	2 cut(s)	980, 1529
BsrFI	RCCGGY	4 cut(s)	152, 284, 666, 719
BsrI	ACTGG	1 cut(s)	1262
BssAI	RCCGGY	4 cut(s)	152, 284, 666, 719
BssECI	CCNNGG	3 cut(s)	18, 418, 493
BssNI	GRCGYC	4 cut(s)	93, 345, 477, 1521
BssSI	CACGAG	1 cut(s)	1335
BssT1I	CCWWGG	1 cut(s)	493
Bst2BI	CACGAG	1 cut(s)	1335
Bst2UI	CCWGG	1 cut(s)	1831
Bst4CI	ACNGT	2 cut(s)	1113, 1174
Bst6I	CTCTTC	3 cut(s)	210, 944, 1917
BstACI	GRCGYC	4 cut(s)	93, 345, 477, 1521
BstAFI	CTTAAG	1 cut(s)	1763
BstAPI	GCANNNNNTGC	1 cut(s)	2138
BstC8I	GCNNGC	5 cut(s)	465, 547, 799, 1326, 2328
BstDEI	CTNAG	4 cut(s)	567, 844, 1421, 1713
BstDSI	CCRYGG	3 cut(s)	18, 418, 493
BstF5I	GGATG	9 cut(s)	46, 148, 294, 396, 865, 1187, 1978, 2089, 2107
BstFNI	CGCG	1 cut(s)	2154
BstHHI	GCGC	2 cut(s)	551, 2154
BstMAI	GTCTC	8 cut(s)	27, 123, 313, 409, 511, 1142, 2066, 2129
BstMWI	GCNNNNNNNGC	5 cut(s)	551, 702, 725, 1330, 2138
BstNI	CCWGG	1 cut(s)	1831
BstNSI	RCATGY	3 cut(s)	601, 1015, 2174
BstSCI	CCNGG	2 cut(s)	605, 1829
BstSFI	CTRYAG	2 cut(s)	435, 703
BstSLI	GKGCMC	1 cut(s)	2149
BstUI	CGCG	1 cut(s)	2154
BstV1I	GCAGC	4 cut(s)	538, 961, 1939, 2065
BstV2I	GAAGAC	1 cut(s)	1070
BstX2I	RGATCY	2 cut(s)	1294, 1699
BstXI	CCANNNNNNTGG	1 cut(s)	860
BstYI	RGATCY	2 cut(s)	1294, 1699
BsuI	GTATCC	1 cut(s)	2257
BsuRI	GGCC	5 cut(s)	23, 53, 387, 417, 1341
BtgI	CCRYGG	3 cut(s)	18, 418, 493
BtsCI	GGATG	9 cut(s)	46, 148, 294, 396, 865, 1187, 1978, 2089, 2107
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	6 cut(s)	180, 939, 1122, 1269, 1679, 1710
Cac8I	GCNNGC	5 cut(s)	465, 547, 799, 1326, 2328
CaiI	CAGNNNCTG	1 cut(s)	2138
CfoI	GCGC	2 cut(s)	551, 2154
Cfr10I	RCCGGY	4 cut(s)	152, 284, 666, 719
CseI	GACGC	2 cut(s)	82, 353
Csp6I	GTAC	1 cut(s)	1792
CviQI	GTAC	1 cut(s)	1792
DdeI	CTNAG	4 cut(s)	567, 844, 1421, 1713
EaeI	YGGCCR	3 cut(s)	21, 415, 1339
Eam1104I	CTCTTC	3 cut(s)	210, 944, 1917
EarI	CTCTTC	3 cut(s)	210, 944, 1917
Ecl136II	GAGCTC	5 cut(s)	115, 325, 843, 956, 1588
Eco130I	CCWWGG	1 cut(s)	493
Eco24I	GRGCYC	5 cut(s)	117, 327, 845, 958, 1590
Eco31I	GGTCTC	1 cut(s)	511
Eco53kI	GAGCTC	5 cut(s)	115, 325, 843, 956, 1588
Eco57I	CTGAAG	2 cut(s)	1520, 1679
EcoICRI	GAGCTC	5 cut(s)	115, 325, 843, 956, 1588
EcoRII	CCWGG	1 cut(s)	1829
EcoT14I	CCWWGG	1 cut(s)	493
EcoT22I	ATGCAT	1 cut(s)	1980
EcoT38I	GRGCYC	5 cut(s)	117, 327, 845, 958, 1590
ErhI	CCWWGG	1 cut(s)	493
Esp3I	CGTCTC	2 cut(s)	123, 313
FalI	AAGNNNNNCTT	2 cut(s)	2050, 2082
FaqI	GGGAC	2 cut(s)	1706, 1862
FauI	CCCGC	2 cut(s)	806, 1662
Fnu4HI	GCNGC	9 cut(s)	54, 157, 282, 385, 468, 552, 975, 1953, 2079
FokI	GGATG	9 cut(s)	53, 155, 281, 383, 872, 1174, 1965, 2096, 2114
FriOI	GRGCYC	5 cut(s)	117, 327, 845, 958, 1590
Fsp4HI	GCNGC	9 cut(s)	54, 157, 282, 385, 468, 552, 975, 1953, 2079
FspBI	CTAG	6 cut(s)	254, 1206, 1359, 1781, 2120, 2327
GlaI	GCGC	2 cut(s)	550, 2153
GluI	GCNGC	9 cut(s)	54, 157, 282, 385, 468, 552, 975, 1953, 2079
GsaI	CCCAGC	2 cut(s)	1652, 2334
HaeIII	GGCC	5 cut(s)	23, 53, 387, 417, 1341
HapII	CCGG	6 cut(s)	153, 285, 607, 667, 720, 1838
HgaI	GACGC	2 cut(s)	82, 353
HhaI	GCGC	2 cut(s)	551, 2154
Hin1I	GRCGYC	4 cut(s)	93, 345, 477, 1521
Hin6I	GCGC	2 cut(s)	549, 2152
HinP1I	GCGC	2 cut(s)	549, 2152
HincII	GTYRAC	1 cut(s)	2292
HindII	GTYRAC	1 cut(s)	2292
HindIII	AAGCTT	2 cut(s)	819, 1573
HpaI	GTTAAC	1 cut(s)	2292
HpaII	CCGG	6 cut(s)	153, 285, 607, 667, 720, 1838
HphI	GGTGA	6 cut(s)	142, 239, 299, 1046, 1084, 2018
Hpy166II	GTNNAC	5 cut(s)	169, 271, 1054, 2292, 2309
Hpy8I	GTNNAC	5 cut(s)	169, 271, 1054, 2292, 2309
HpyAV	CCTTC	8 cut(s)	203, 535, 1012, 1194, 1299, 1389, 1654, 2048
HpyCH4III	ACNGT	2 cut(s)	1113, 1174
HpyCH4IV	ACGT	6 cut(s)	72, 366, 477, 1036, 1521, 1609
HpyF10VI	GCNNNNNNNGC	5 cut(s)	551, 702, 725, 1330, 2138
HpyF3I	CTNAG	4 cut(s)	567, 844, 1421, 1713
HpySE526I	ACGT	6 cut(s)	72, 366, 477, 1036, 1521, 1609
Hsp92I	GRCGYC	4 cut(s)	93, 345, 477, 1521
HspAI	GCGC	2 cut(s)	549, 2152
KspAI	GTTAAC	1 cut(s)	2292
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	7 cut(s)	120, 232, 322, 529, 716, 1145, 1435
Lsp1109I	GCAGC	4 cut(s)	538, 961, 1939, 2065
LweI	GCATC	4 cut(s)	754, 1001, 1244, 1987
MaeI	CTAG	6 cut(s)	254, 1206, 1359, 1781, 2120, 2327
MaeII	ACGT	6 cut(s)	72, 366, 477, 1036, 1521, 1609
MaeIII	GTNAC	2 cut(s)	1643, 2249
MbiI	CCGCTC	1 cut(s)	467
MboII	GAAGA	9 cut(s)	227, 904, 907, 961, 1070, 1117, 1747, 1931, 1934
MfeI	CAATTG	2 cut(s)	1017, 1459
MflI	RGATCY	2 cut(s)	1294, 1699
MhlI	GDGCHC	6 cut(s)	117, 327, 845, 958, 1590, 2149
MlsI	TGGCCA	1 cut(s)	1341
MluNI	TGGCCA	1 cut(s)	1341
MlyI	GAGTC	4 cut(s)	2, 171, 269, 1084
MmeI	TCCRAC	4 cut(s)	10, 120, 322, 432
Mox20I	TGGCCA	1 cut(s)	1341
Mph1103I	ATGCAT	1 cut(s)	1980
MroXI	GAANNNNTTC	2 cut(s)	587, 1285
MscI	TGGCCA	1 cut(s)	1341
MseI	TTAA	9 cut(s)	75, 363, 662, 1626, 1640, 1764, 2202, 2270, 2291
MslI	CAYNNNNRTG	4 cut(s)	687, 1010, 1508, 1626
Msp20I	TGGCCA	1 cut(s)	1341
MspA1I	CMGCKG	3 cut(s)	1657, 1952, 2078
MspCI	CTTAAG	1 cut(s)	1763
MspI	CCGG	6 cut(s)	153, 285, 607, 667, 720, 1838
MspR9I	CCNGG	2 cut(s)	607, 1831
MunI	CAATTG	2 cut(s)	1017, 1459
Mva1269I	GAATGC	1 cut(s)	1428
MvaI	CCWGG	1 cut(s)	1831
MvnI	CGCG	1 cut(s)	2154
MwoI	GCNNNNNNNGC	5 cut(s)	551, 702, 725, 1330, 2138
NciI	CCSGG	1 cut(s)	607
NcoI	CCATGG	1 cut(s)	493
NheI	GCTAGC	1 cut(s)	2326
NlaIV	GGNNCC	5 cut(s)	234, 718, 1260, 1296, 1400
NsiI	ATGCAT	1 cut(s)	1980
NspI	RCATGY	3 cut(s)	601, 1015, 2174
OliI	CACNNNNGTG	1 cut(s)	687
PciI	ACATGT	2 cut(s)	597, 1011
PciSI	GCTCTTC	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PctI	GAATGC	1 cut(s)	1428
PdmI	GAANNNNTTC	2 cut(s)	587, 1285
PkrI	GCNGC	9 cut(s)	55, 158, 283, 386, 469, 553, 976, 1954, 2080
PleI	GAGTC	4 cut(s)	2, 171, 268, 1083
PpsI	GAGTC	4 cut(s)	2, 171, 268, 1083
PscI	ACATGT	2 cut(s)	597, 1011
PsiI	TTATAA	1 cut(s)	917
Psp124BI	GAGCTC	5 cut(s)	117, 327, 845, 958, 1590
Psp6I	CCWGG	1 cut(s)	1829
PspFI	CCCAGC	2 cut(s)	1648, 2330
PspGI	CCWGG	1 cut(s)	1829
PspN4I	GGNNCC	5 cut(s)	234, 718, 1260, 1296, 1400
PstI	CTGCAG	1 cut(s)	707
PstNI	CAGNNNCTG	1 cut(s)	2138
PsuI	RGATCY	2 cut(s)	1294, 1699
PvuII	CAGCTG	2 cut(s)	1952, 2078
RsaI	GTAC	1 cut(s)	1793
RsaNI	GTAC	1 cut(s)	1792
RseI	CAYNNNNRTG	4 cut(s)	687, 1010, 1508, 1626
SacI	GAGCTC	5 cut(s)	117, 327, 845, 958, 1590
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	9 cut(s)	75, 363, 662, 1626, 1640, 1764, 2202, 2270, 2291
SatI	GCNGC	9 cut(s)	54, 157, 282, 385, 468, 552, 975, 1953, 2079
ScaI	AGTACT	1 cut(s)	1793
SchI	GAGTC	4 cut(s)	2, 171, 269, 1084
ScrFI	CCNGG	2 cut(s)	607, 1831
SduI	GDGCHC	6 cut(s)	117, 327, 845, 958, 1590, 2149
SfaNI	GCATC	4 cut(s)	754, 1001, 1244, 1987
SfcI	CTRYAG	2 cut(s)	435, 703
SgrAI	CRCCGGYG	2 cut(s)	152, 284
SmiMI	CAYNNNNRTG	4 cut(s)	687, 1010, 1508, 1626
SmlI	CTYRAG	5 cut(s)	47, 389, 1576, 1763, 2285
SmoI	CTYRAG	5 cut(s)	47, 389, 1576, 1763, 2285
SpeI	ACTAGT	1 cut(s)	2119
SsiI	CCGC	9 cut(s)	54, 156, 250, 282, 384, 467, 799, 1655, 2081
SspMI	CTAG	6 cut(s)	254, 1206, 1359, 1781, 2120, 2327
SstI	GAGCTC	5 cut(s)	117, 327, 845, 958, 1590
StyD4I	CCNGG	2 cut(s)	605, 1829
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	2 cut(s)	1113, 1174
TaiI	ACGT	6 cut(s)	75, 369, 480, 1039, 1524, 1612
TaqI	TCGA	9 cut(s)	96, 108, 330, 342, 480, 839, 1222, 1612, 2242
TatI	WGTACW	1 cut(s)	1791
TauI	GCSGC	5 cut(s)	56, 159, 284, 387, 470
Tru1I	TTAA	9 cut(s)	75, 363, 662, 1626, 1640, 1764, 2202, 2270, 2291
Tru9I	TTAA	9 cut(s)	75, 363, 662, 1626, 1640, 1764, 2202, 2270, 2291
TscAI	CASTG	6 cut(s)	187, 946, 1122, 1269, 1686, 1717
TseI	GCWGC	4 cut(s)	551, 974, 1952, 2078
TspGWI	ACGGA	6 cut(s)	7, 189, 245, 253, 435, 825
TspRI	CASTG	6 cut(s)	187, 946, 1122, 1269, 1686, 1717
Vha464I	CTTAAG	1 cut(s)	1763
XapI	RAATTY	4 cut(s)	243, 1822, 1883, 2212
XceI	RCATGY	3 cut(s)	601, 1015, 2174
XmnI	GAANNNNTTC	2 cut(s)	587, 1285
XspI	CTAG	6 cut(s)	254, 1206, 1359, 1781, 2120, 2327
ZraI	GACGTC	2 cut(s)	478, 1522
ZrmI	AGTACT	1 cut(s)	1793
Zsp2I	ATGCAT	1 cut(s)	1980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.