Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000856

Physical Location & Seq

Genomic Coordinates Forward (+)

22122797 .. 22125355

Gene Structure 2559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0240400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAAGTATTTGGAAAGAAAACAAAATTCGGCGAAATTGGAGAGTAACAATGGTTCTAGTACTACTGGAGGAGAACTGAAGAAGAAGCAATGCATGCCAGTGGATCTGGCATTGAAGGAGACTTACTTCAAAGGCTCACTCATGGATCGAGTGGCAGCTCTTGAAAATAGGCTTTTTCAGCTGTGCTTAGAGAAGGAATCAAGCAGCTCATCTAGCACTTCTACACAGGCATCATCTGGTGAAACCTACTGGAGCCACGGATTGAAGGGCGAATCATCTTGCTCGCTCCCAACTTTCACTCCCAATATTCCCTTTCATGCTCACAATAAACGACTCTCCCAAGTCCATGCCACTAGGCTTGAAATTCAGGAACAACCCGATAGAGTGAATAACCCAAAGCAGAATAAGAAGCCTTCAAGTTCTCCTGCTCAACAGAAACATAGGAAGAAGAAGACAACTAGGGCCAATAAGGATGAAAAATCTCTCAAAACTGAGAAGAAGAGAATCCCTCCCATTAGTTGGCCACACCTAAAAATATTGGGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0000795 GO:0002200 GO:0002376 GO:0002377 GO:0002440 GO:0002520 GO:0002566 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006281 GO:0006298 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009555 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0016445 GO:0016446 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032300 GO:0032389 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0061458 GO:0070013 GO:0071704 GO:0090304 GO:0090351 GO:0097159 GO:0099086 GO:1901360 GO:1901363 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko01524 ko03430 ko03460 ko05200 ko05210 ko05213 ko05226 map01524 map03430 map03460 map05200 map05210 map05213 map05226

Pfam Domains

Protein Families

DNA_mis_repair HATPase_c_3 Mlh1_C

Protein Analysis

182

Amino Acids

20.49

Weight (kDa)

9.86

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03430 AT4G03430 AT4G03430
fragaria_vesca	FvH4_2g13420 FvH4_5g31520
malus_domestica	MD09G1251900.v1.1 MD17G1244100.v1.1
prunus_persica	Prupe.2G325100_v2.0.a1 Prupe.2G325100_v2.0.a1 Prupe.2G325100_v2.0.a1 Prupe.2G325100_v2.0.a1 Prupe.3G157000_v2.0.a1 Prupe.3G207300_v2.0.a1 Prupe.8G033800_v2.0.a1 Prupe.8G033800_v2.0.a1 Prupe.8G033800_v2.0.a1 Prupe.8G033800_v2.0.a1
pyrus_communis	pycom09g16820 pycom17g24700
rosa_chinensis	RchiOBHm_Chr3g0494631 RchiOBHm_Chr3g0494641 RchiOBHm_Chr5g0050851 RchiOBHm_Chr6g0275031 RchiOBHm_Chr6g0275041 RchiOBHm_Chr7g0226921
rosa_laevigata	RLG00000001682 RLG00000013503
rosa_multiflora	Rmu_sc0000181.1_g000002 Rmu_sc0000356.1_g000010 Rmu_sc0002032.1_g000003 Rmu_sc0002032.1_g000005 Rmu_sc0002032.1_g000006 Rmu_sc0002762.1_g000009 Rmu_sc0003080.1_g000020 Rmu_sc0003080.1_g000021 Rmu_sc0037591.1_g000001 Rmu_sc0040731.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029850
rosa_rugosa	Rorug03G0266300 Rorug03G0266400 Rorug05G0264700.1 Rorug07G0240400
rosa_samantha	Rh3CG348400 Rh3CG348500 Rh3DG351000 Rh3DG351100 Rh5AG336600 Rh5BG346200 Rh5CG373800 Rh5DG359100 Rh6AG201800 Rh6AG201900 Rh6BG205300 Rh6BG205400 Rh6BG255100 Rh6CG206900 Rh6CG207100 Rh6CG207200 Rh6DG197100 Rh6DG197200 Rh7AG388400 Rh7BG374400 Rh7CG407700 Rh7DG386600
rosa_wichuraiana	Rw5G031750 Rw6G017550 Rw7G032580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	519
AclWI	GGATC	2 cut(s)	111, 153
AcoI	YGGCCR	1 cut(s)	521
AcsI	RAATTY	2 cut(s)	25, 363
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	519
AgsI	TTSAA	6 cut(s)	115, 130, 164, 265, 362, 417
AluBI	AGCT	3 cut(s)	158, 181, 207
AluI	AGCT	3 cut(s)	158, 181, 207
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	2 cut(s)	111, 153
AoxI	GGCC	2 cut(s)	462, 521
ApeKI	GCWGC	3 cut(s)	155, 204, 543
ApoI	RAATTY	2 cut(s)	25, 363
AspS9I	GGNCC	1 cut(s)	462
AsuHPI	GGTGA	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	523
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BbsI	GAAGAC	1 cut(s)	458
BbvI	GCAGC	3 cut(s)	167, 216, 530
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	5 cut(s)	57, 213, 354, 459, 547
BisI	GCNGC	3 cut(s)	156, 205, 544
BlsI	GCNGC	3 cut(s)	157, 206, 545
BmcAI	AGTACT	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	254
BmsI	GCATC	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	458
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
BpmI	CTGGAG	2 cut(s)	87, 271
BsaJI	CCNNGG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	519
Bse1I	ACTGG	3 cut(s)	70, 98, 254
Bse3DI	GCAATG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	1 cut(s)	519
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	3 cut(s)	70, 98, 254
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	3 cut(s)	167, 216, 530
BshFI	GGCC	2 cut(s)	464, 523
BslI	CCNNNNNNNGG	1 cut(s)	519
BsmAI	GTCTC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	464, 523
Bsp143I	GATC	2 cut(s)	103, 145
BspANI	GGCC	2 cut(s)	464, 523
BspCNI	CTCAG	1 cut(s)	484
BspLI	GGNNCC	1 cut(s)	254
BspPI	GGATC	2 cut(s)	111, 153
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	3 cut(s)	70, 98, 254
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	2 cut(s)	103, 145
Bst6I	CTCTTC	1 cut(s)	494
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	95, 284
BstDEI	CTNAG	2 cut(s)	187, 492
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	2 cut(s)	106, 148
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	2 cut(s)	103, 145
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 178, 213
BstNSI	RCATGY	1 cut(s)	97
BstV1I	GCAGC	3 cut(s)	167, 216, 530
BstV2I	GAAGAC	1 cut(s)	458
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	464, 523
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	95, 284
Cfr13I	GGNCC	1 cut(s)	462
Csp6I	GTAC	1 cut(s)	60
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	4 cut(s)	94, 142, 317, 347
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	2 cut(s)	187, 492
DpnI	GATC	2 cut(s)	105, 147
DpnII	GATC	2 cut(s)	103, 145
EaeI	YGGCCR	1 cut(s)	521
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
Eco57I	CTGAAG	1 cut(s)	98
EcoT22I	ATGCAT	1 cut(s)	95
FaeI	CATG	4 cut(s)	97, 145, 320, 350
FaiI	YATR	5 cut(s)	95, 143, 318, 348, 441
FatI	CATG	4 cut(s)	93, 141, 316, 346
Fnu4HI	GCNGC	3 cut(s)	156, 205, 544
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	3 cut(s)	156, 205, 544
FspBI	CTAG	5 cut(s)	57, 213, 354, 459, 547
GluI	GCNGC	3 cut(s)	156, 205, 544
GsuI	CTGGAG	2 cut(s)	87, 271
HaeIII	GGCC	2 cut(s)	464, 523
Hin1II	CATG	4 cut(s)	97, 145, 320, 350
HinfI	GANTC	4 cut(s)	197, 272, 333, 504
HphI	GGTGA	1 cut(s)	251
Hpy188III	TCNNGA	2 cut(s)	161, 368
HpyAV	CCTTC	4 cut(s)	109, 187, 259, 423
HpyCH4V	TGCA	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 178, 213
HpyF3I	CTNAG	2 cut(s)	187, 492
Hsp92II	CATG	4 cut(s)	97, 145, 320, 350
Kzo9I	GATC	2 cut(s)	103, 145
LmnI	GCTCC	2 cut(s)	252, 291
LpnPI	CCDG	8 cut(s)	51, 92, 111, 212, 222, 235, 353, 438
Lsp1109I	GCAGC	3 cut(s)	167, 216, 530
LweI	GCATC	1 cut(s)	239
MaeI	CTAG	5 cut(s)	57, 213, 354, 459, 547
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	2 cut(s)	105, 147
MboI	GATC	2 cut(s)	103, 145
MboII	GAAGA	7 cut(s)	91, 94, 457, 460, 463, 508, 511
MflI	RGATCY	1 cut(s)	103
MlsI	TGGCCA	1 cut(s)	523
MluCI	AATT	3 cut(s)	25, 35, 363
MluNI	TGGCCA	1 cut(s)	523
MlyI	GAGTC	1 cut(s)	327
MnlI	CCTC	2 cut(s)	62, 519
Mox20I	TGGCCA	1 cut(s)	523
Mph1103I	ATGCAT	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	523
MslI	CAYNNNNRTG	1 cut(s)	98
Msp20I	TGGCCA	1 cut(s)	523
MspA1I	CMGCKG	1 cut(s)	181
MwoI	GCNNNNNNNGC	3 cut(s)	94, 178, 213
NdeII	GATC	2 cut(s)	103, 145
NlaIII	CATG	4 cut(s)	97, 145, 320, 350
NlaIV	GGNNCC	1 cut(s)	254
NsiI	ATGCAT	1 cut(s)	95
NspI	RCATGY	1 cut(s)	97
PaeI	GCATGC	1 cut(s)	97
PfeI	GAWTC	3 cut(s)	197, 272, 504
PflMI	CCANNNNNTGG	1 cut(s)	519
PkrI	GCNGC	3 cut(s)	157, 206, 545
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	462
PsrI	GAACNNNNNNTAC	2 cut(s)	37, 69
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	98
SatI	GCNGC	3 cut(s)	156, 205, 544
Sau3AI	GATC	2 cut(s)	103, 145
Sau96I	GGNCC	1 cut(s)	462
ScaI	AGTACT	1 cut(s)	61
SchI	GAGTC	1 cut(s)	327
SetI	ASST	5 cut(s)	160, 183, 209, 248, 531
SfaNI	GCATC	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	98
SphI	GCATGC	1 cut(s)	97
Sse9I	AATT	3 cut(s)	25, 35, 363
SspI	AATATT	2 cut(s)	307, 537
SspMI	CTAG	5 cut(s)	57, 213, 354, 459, 547
TaqI	TCGA	1 cut(s)	148
TasI	AATT	3 cut(s)	25, 35, 363
TatI	WGTACW	1 cut(s)	59
TfiI	GAWTC	3 cut(s)	197, 272, 504
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	3 cut(s)	155, 204, 543
TspDTI	ATGAA	3 cut(s)	17, 305, 489
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	105
Van91I	CCANNNNNTGG	1 cut(s)	519
XapI	RAATTY	2 cut(s)	25, 363
XceI	RCATGY	1 cut(s)	97
XspI	CTAG	5 cut(s)	57, 213, 354, 459, 547
ZrmI	AGTACT	1 cut(s)	61
Zsp2I	ATGCAT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.