Rh3DG351100

PRP1 splicing factor, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000856
Physical Location & Seq
Forward (+)
41884635 .. 41885249
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG351100.1

Sequence Viewer

Length: 615 bp
ATGTGTCCGAAGAATGAGGATGTGTGGTTAGAGGCATGCAGGCTTGTCAGCCCCAGCAAAGCCAAGGTGGTTGTTGCTATGGGAGTGAAGCATATACCGAATTCGGTGGACTTGTGGATGAGGGCTGTGGATTTGGAGCATGATAAGTCGAATAAGAAGAAGGTGTTGTGGAAAGCTTTGGATCAAAGTAATGAAAATCTTCGTTGCGTTAGGCTGTGGAAGGCAGTGATGGATCTCTGTCATGAAGATGACAAGGATATGAAAGTTTTGCTTCATAGGGCCGTGGAGGTTTGTCCGTTAGAGGTTCAATTTTGGATTGCTCTTGCGAGGTCAGAAAGTTATGAGGCTGCCAAGATGATTCTTAATAATGCTAGAGTGCATCTTCCGAAAGAGCGCGCCATTTGGGTTGAAGTAGCCAAGTTGGAAGAAGTTAGGGGGAATGTGTCTAAGGTTGGGAAGATTATTGAAAGGGGTATAAAGCTTTTGCAGGAACAAGGGTTGGTGAATTTCAGAGAAACATGGATGAAGGAAGCTGAAAAGGTTGAGCGTGTTGGGCATGTGACAGTTTGCCAAGCAATCATTCAAAACAGTGTTGGGGTTGGCGTTGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

204

Amino Acids

23.34

Weight (kDa)

8.18

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAT_PRP39_C PF23241 81 - 162 8e-07 PRP39 C-terminal HAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 396
AclWI GGATC 2 cut(s) 189, 240
AcsI RAATTY 2 cut(s) 100, 505
AgsI TTSAA 5 cut(s) 308, 410, 467, 584, 608
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
AluBI AGCT 3 cut(s) 176, 481, 533
AluI AGCT 3 cut(s) 176, 481, 533
AlwI GGATC 2 cut(s) 189, 240
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 2 cut(s) 100, 505
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 2 cut(s) 396, 398
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 514
BbvI GCAGC 1 cut(s) 334
BccI CCATC 1 cut(s) 223
BceAI ACGGC 1 cut(s) 266
BfaI CTAG 1 cut(s) 372
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 279
BmsI GCATC 1 cut(s) 388
BsaJI CCNNGG 2 cut(s) 63, 282
BseDI CCNNGG 2 cut(s) 63, 282
BseGI GGATG 3 cut(s) 25, 123, 528
BsePI GCGCGC 1 cut(s) 394
BseXI GCAGC 1 cut(s) 334
BseYI CCCAGC 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 1 cut(s) 281
BsnI GGCC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 181, 232
BspANI GGCC 1 cut(s) 281
BspFNI CGCG 1 cut(s) 396
BspHI TCATGA 1 cut(s) 241
BspPI GGATC 2 cut(s) 189, 240
BssECI CCNNGG 2 cut(s) 63, 282
BssHII GCGCGC 1 cut(s) 394
BssMI GATC 2 cut(s) 181, 232
BssT1I CCWWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 565, 590
BstC8I GCNNGC 3 cut(s) 37, 41, 396
BstDEI CTNAG 1 cut(s) 447
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 3 cut(s) 25, 123, 528
BstFNI CGCG 1 cut(s) 396
BstHHI GCGC 2 cut(s) 396, 398
BstKTI GATC 2 cut(s) 184, 235
BstMBI GATC 2 cut(s) 181, 232
BstMWI GCNNNNNNNGC 1 cut(s) 553
BstNSI RCATGY 2 cut(s) 39, 560
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 281
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 3 cut(s) 25, 123, 528
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 231, 595
Cac8I GCNNGC 3 cut(s) 37, 41, 396
CciI TCATGA 1 cut(s) 241
CfoI GCGC 2 cut(s) 396, 398
Cfr13I GGNCC 1 cut(s) 279
CviAII CATG 5 cut(s) 36, 140, 242, 519, 557
DdeI CTNAG 1 cut(s) 447
DpnI GATC 2 cut(s) 183, 234
DpnII GATC 2 cut(s) 181, 232
Eco130I CCWWGG 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 5 cut(s) 39, 143, 245, 522, 560
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FatI CATG 5 cut(s) 35, 139, 241, 518, 556
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 3 cut(s) 32, 130, 535
Fsp4HI GCNGC 1 cut(s) 348
FspBI CTAG 1 cut(s) 372
GlaI GCGC 2 cut(s) 395, 397
GluI GCNGC 1 cut(s) 348
GsaI CCCAGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 281
HhaI GCGC 2 cut(s) 396, 398
Hin1II CATG 5 cut(s) 39, 143, 245, 522, 560
Hin6I GCGC 2 cut(s) 394, 396
HinP1I GCGC 2 cut(s) 394, 396
HindIII AAGCTT 2 cut(s) 174, 479
HinfI GANTC 1 cut(s) 358
HphI GGTGA 1 cut(s) 514
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 4 cut(s) 9, 334, 387, 512
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 3 cut(s) 154, 214, 520
HpyCH4III ACNGT 2 cut(s) 565, 590
HpyCH4V TGCA 3 cut(s) 39, 379, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 553
HpyF3I CTNAG 1 cut(s) 447
Hsp92II CATG 5 cut(s) 39, 143, 245, 522, 560
HspAI GCGC 2 cut(s) 394, 396
Kzo9I GATC 2 cut(s) 181, 232
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 3 cut(s) 25, 67, 473
Lsp1109I GCAGC 1 cut(s) 334
LweI GCATC 1 cut(s) 388
MaeI CTAG 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 559
MalI GATC 2 cut(s) 183, 234
MboI GATC 2 cut(s) 181, 232
MboII GAAGA 7 cut(s) 22, 169, 191, 257, 374, 437, 469
MflI RGATCY 1 cut(s) 232
MluCI AATT 3 cut(s) 100, 308, 505
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 7 cut(s) 10, 25, 114, 280, 295, 321, 337
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 246
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 1 cut(s) 553
NdeII GATC 2 cut(s) 181, 232
NlaIII CATG 5 cut(s) 39, 143, 245, 522, 560
NmuCI GTSAC 1 cut(s) 559
NspI RCATGY 2 cut(s) 39, 560
PaeI GCATGC 1 cut(s) 39
PagI TCATGA 1 cut(s) 241
PauI GCGCGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 358
PkrI GCNGC 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 279
PsuI RGATCY 1 cut(s) 232
PteI GCGCGC 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 2 cut(s) 181, 232
Sau96I GGNCC 1 cut(s) 279
SfaNI GCATC 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 246
SphI GCATGC 1 cut(s) 39
Sse9I AATT 3 cut(s) 100, 308, 505
SspMI CTAG 1 cut(s) 372
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 2 cut(s) 565, 590
TaqI TCGA 1 cut(s) 149
TasI AATT 3 cut(s) 100, 308, 505
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 2 cut(s) 231, 595
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 5 cut(s) 207, 258, 263, 275, 539
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 2 cut(s) 231, 595
XapI RAATTY 2 cut(s) 100, 505
XceI RCATGY 2 cut(s) 39, 560
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.