Rh3DG351000

PRP1 splicing factor, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000856
Physical Location & Seq
Forward (+)
41883975 .. 41884370
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG351000.1

Sequence Viewer

Length: 396 bp
ATGGGAGAGCTTACCAGAAATGGGGATTATTCGTGGAAGAACAGGAAGAAGAGGAAGTTCGAAAGCTTTGTTCCGGTGCCGGATACCATTTTCGAGAAGGCCAGGCTGGAGAGGCAGCATGTTGCGTCTGTAGACCCAATGAGTACAGATTTGACTGCATTGGGTGAGGGAAAGGGCACAGTGATGAAGCTGAAATTGGATAGGCTTTCGGATTCGGTTTCGGGGCTCACCAGTGTGGATCCAAAGGGGTATCTTAGTGGTCTTTTGAGTATGAATATGAACGTTAGTACTAGTTCTGATGTTTCGGATATAAAGAAGACTAGACAGTTGTATAGGAGTGTAAGAGAGTCAAAGCCTAAGGACCCGTGTGGTTGGAGGAGATGGTGGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

131

Amino Acids

14.84

Weight (kDa)

9.79

Isoelectric Point (pI)

26.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 132
AclI AACGTT 1 cut(s) 282
AclWI GGATC 2 cut(s) 233, 246
AfaI GTAC 2 cut(s) 145, 289
AfiI CCNNNNNNNGG 1 cut(s) 21
AhlI ACTAGT 1 cut(s) 290
AjnI CCWGG 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AleI CACNNNNGTG 1 cut(s) 233
AluBI AGCT 3 cut(s) 10, 66, 190
AluI AGCT 3 cut(s) 10, 66, 190
AlwI GGATC 2 cut(s) 233, 246
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 2 cut(s) 176, 220
AsuII TTCGAA 1 cut(s) 60
AvaII GGWCC 1 cut(s) 361
AxyI CCTNAGG 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 179
BamHI GGATCC 1 cut(s) 238
BanI GGYRCC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 323
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 375
BciT130I CCWGG 1 cut(s) 103
BciVI GTATCC 1 cut(s) 76
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 2 cut(s) 291, 321
BfmI CTRYAG 1 cut(s) 129
BfuI GTATCC 1 cut(s) 76
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BmcAI AGTACT 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 3 cut(s) 78, 240, 363
BmrFI CCNGG 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 323
BpmI CTGGAG 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 231
Bse21I CCTNAGG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 391
BseSI GKGCMC 1 cut(s) 179
BseXI GCAGC 1 cut(s) 127
BshFI GGCC 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 76
BsiSI CCGG 2 cut(s) 74, 80
BslI CCNNNNNNNGG 1 cut(s) 21
BsnI GGCC 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 179, 228
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 1 cut(s) 101
BspLI GGNNCC 3 cut(s) 78, 240, 363
BspPI GGATC 2 cut(s) 233, 246
BspT104I TTCGAA 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 231
BssMI GATC 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 103
Bst4CI ACNGT 2 cut(s) 181, 327
Bst6I CTCTTC 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 254, 357
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
Bsu36I CCTNAGG 1 cut(s) 357
BsuI GTATCC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 101
BtsIMutI CAGTG 2 cut(s) 186, 238
Cfr13I GGNCC 1 cut(s) 361
CseI GACGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 144, 288
CviAII CATG 1 cut(s) 119
CviJI RGCY 8 cut(s) 10, 66, 101, 106, 190, 205, 226, 355
CviKI_1 RGCY 8 cut(s) 10, 66, 101, 106, 190, 205, 226, 355
CviQI GTAC 2 cut(s) 144, 288
DdeI CTNAG 2 cut(s) 254, 357
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 361
Eco81I CCTNAGG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 228
FaeI CATG 1 cut(s) 122
FaiI YATR 5 cut(s) 120, 272, 278, 311, 333
FatI CATG 1 cut(s) 118
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 2 cut(s) 291, 321
GluI GCNGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 101
HapII CCGG 2 cut(s) 74, 80
HgaI GACGC 1 cut(s) 114
Hin1II CATG 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 2 cut(s) 212, 347
HpaII CCGG 2 cut(s) 74, 80
HphI GGTGA 2 cut(s) 176, 220
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 3 cut(s) 211, 298, 307
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 2 cut(s) 181, 327
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 2 cut(s) 254, 357
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 1 cut(s) 122
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 8 cut(s) 28, 28, 87, 88, 92, 93, 115, 244
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 2 cut(s) 291, 321
MaeII ACGT 1 cut(s) 282
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 4 cut(s) 49, 58, 61, 328
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 179, 228
MluCI AATT 1 cut(s) 194
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 4 cut(s) 45, 105, 160, 369
MslI CAYNNNNRTG 2 cut(s) 182, 233
MspI CCGG 2 cut(s) 74, 80
MspR9I CCNGG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 3 cut(s) 78, 240, 363
NspI RCATGY 1 cut(s) 122
NspV TTCGAA 1 cut(s) 60
OliI CACNNNNGTG 1 cut(s) 233
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 117
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PpuMI RGGWCCY 1 cut(s) 361
Psp1406I AACGTT 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 3 cut(s) 78, 240, 363
PspPI GGNCC 1 cut(s) 361
PspPPI RGGWCCY 1 cut(s) 361
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 2 cut(s) 145, 289
RsaNI GTAC 2 cut(s) 144, 288
RseI CAYNNNNRTG 2 cut(s) 182, 233
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 361
ScaI AGTACT 1 cut(s) 289
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 2 cut(s) 179, 228
SetI ASST 4 cut(s) 12, 68, 192, 285
SfcI CTRYAG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 60
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 2 cut(s) 182, 233
SpeI ACTAGT 1 cut(s) 290
Sse9I AATT 1 cut(s) 194
SspMI CTAG 2 cut(s) 291, 321
StyD4I CCNGG 1 cut(s) 101
TaaI ACNGT 2 cut(s) 181, 327
TaiI ACGT 1 cut(s) 285
TaqI TCGA 2 cut(s) 60, 93
TasI AATT 1 cut(s) 194
TatI WGTACW 2 cut(s) 143, 287
TfiI GAWTC 1 cut(s) 212
TscAI CASTG 2 cut(s) 186, 238
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 3 cut(s) 200, 287, 293
TspRI CASTG 2 cut(s) 186, 238
VpaK11BI GGWCC 1 cut(s) 361
XceI RCATGY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 2 cut(s) 291, 321
ZrmI AGTACT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.