pre-mRNA-processing factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 239, 311 |
| AccBSI | CCGCTC | 2 cut(s) | 333, 354 |
| AccI | GTMKAC | 1 cut(s) | 792 |
| AccII | CGCG | 3 cut(s) | 473, 497, 515 |
| AclWI | GGATC | 2 cut(s) | 893, 906 |
| AcoI | YGGCCR | 1 cut(s) | 304 |
| AcyI | GRCGYC | 2 cut(s) | 168, 312 |
| AfaI | GTAC | 3 cut(s) | 479, 805, 949 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 233, 371, 680 |
| AgsI | TTSAA | 3 cut(s) | 443, 628, 1075 |
| AhlI | ACTAGT | 1 cut(s) | 950 |
| AjnI | CCWGG | 2 cut(s) | 761, 1082 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 839, 871 |
| AleI | CACNNNNGTG | 1 cut(s) | 893 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 625, 657 |
| AluBI | AGCT | 5 cut(s) | 377, 637, 669, 726, 850 |
| AluI | AGCT | 5 cut(s) | 377, 637, 669, 726, 850 |
| Alw26I | GTCTC | 1 cut(s) | 890 |
| AlwI | GGATC | 2 cut(s) | 893, 906 |
| Ama87I | CYCGRG | 1 cut(s) | 538 |
| AoxI | GGCC | 4 cut(s) | 298, 304, 343, 759 |
| ApeKI | GCWGC | 3 cut(s) | 637, 775, 1043 |
| AspLEI | GCGC | 2 cut(s) | 126, 314 |
| AspS9I | GGNCC | 3 cut(s) | 197, 344, 1021 |
| AsuC2I | CCSGG | 1 cut(s) | 617 |
| AsuHPI | GGTGA | 5 cut(s) | 64, 110, 259, 316, 880 |
| AvaI | CYCGRG | 1 cut(s) | 538 |
| AvaII | GGWCC | 2 cut(s) | 197, 1021 |
| BamHI | GGATCC | 1 cut(s) | 898 |
| BanI | GGYRCC | 2 cut(s) | 239, 311 |
| BbsI | GAAGAC | 2 cut(s) | 617, 983 |
| BbvI | GCAGC | 3 cut(s) | 624, 787, 1030 |
| BccI | CCATC | 4 cut(s) | 119, 526, 571, 1054 |
| BceAI | ACGGC | 1 cut(s) | 491 |
| BciT130I | CCWGG | 2 cut(s) | 763, 1084 |
| BciVI | GTATCC | 1 cut(s) | 736 |
| BcnI | CCSGG | 1 cut(s) | 617 |
| BcoDI | GTCTC | 1 cut(s) | 890 |
| BcuI | ACTAGT | 1 cut(s) | 950 |
| BfaI | CTAG | 4 cut(s) | 767, 951, 981, 1139 |
| BfmI | CTRYAG | 1 cut(s) | 789 |
| BfoI | RGCGCY | 2 cut(s) | 127, 315 |
| BfuI | GTATCC | 1 cut(s) | 736 |
| BisI | GCNGC | 8 cut(s) | 171, 238, 498, 516, 638, 776, 1041, 1044 |
| BlsI | GCNGC | 8 cut(s) | 172, 239, 499, 517, 639, 777, 1042, 1045 |
| BmcAI | AGTACT | 1 cut(s) | 949 |
| Bme1390I | CCNGG | 3 cut(s) | 617, 763, 1084 |
| Bme18I | GGWCC | 2 cut(s) | 197, 1021 |
| BmeT110I | CYCGRG | 1 cut(s) | 538 |
| BmgT120I | GGNCC | 3 cut(s) | 197, 344, 1021 |
| BmiI | GGNNCC | 6 cut(s) | 199, 241, 313, 346, 900, 1023 |
| BmrFI | CCNGG | 3 cut(s) | 617, 763, 1084 |
| BmsI | GCATC | 2 cut(s) | 201, 493 |
| BpiI | GAAGAC | 2 cut(s) | 617, 983 |
| BpuMI | CCSGG | 1 cut(s) | 617 |
| BsaHI | GRCGYC | 2 cut(s) | 168, 312 |
| BsaI | GGTCTC | 1 cut(s) | 890 |
| BsaJI | CCNNGG | 8 cut(s) | 187, 232, 301, 307, 615, 1017, 1083, 1173 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 242, 272, 349, 379, 572, 602 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 233, 371, 680 |
| Bse118I | RCCGGY | 2 cut(s) | 296, 317 |
| Bse1I | ACTGG | 1 cut(s) | 891 |
| BseBI | CCWGG | 2 cut(s) | 763, 1084 |
| BseDI | CCNNGG | 8 cut(s) | 187, 232, 301, 307, 615, 1017, 1083, 1173 |
| BseGI | GGATG | 2 cut(s) | 537, 1135 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 233, 371, 680 |
| BseMII | CTCAG | 1 cut(s) | 588 |
| BseNI | ACTGG | 1 cut(s) | 891 |
| BseRI | GAGGAG | 7 cut(s) | 59, 167, 556, 568, 635, 724, 1070 |
| BseX3I | CGGCCG | 1 cut(s) | 304 |
| BseXI | GCAGC | 3 cut(s) | 624, 787, 1030 |
| BseYI | CCCAGC | 2 cut(s) | 243, 1163 |
| Bsh1236I | CGCG | 3 cut(s) | 473, 497, 515 |
| Bsh1285I | CGRYCG | 1 cut(s) | 307 |
| BshFI | GGCC | 4 cut(s) | 300, 306, 345, 761 |
| BshNI | GGYRCC | 2 cut(s) | 239, 311 |
| BsiEI | CGRYCG | 1 cut(s) | 307 |
| BsiHKCI | CYCGRG | 1 cut(s) | 538 |
| BsiSI | CCGG | 4 cut(s) | 297, 318, 617, 740 |
| BslFI | GGGAC | 1 cut(s) | 850 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 233, 371, 680 |
| BsmAI | GTCTC | 1 cut(s) | 890 |
| BsmFI | GGGAC | 1 cut(s) | 850 |
| BsnI | GGCC | 4 cut(s) | 300, 306, 345, 761 |
| Bso31I | GGTCTC | 1 cut(s) | 890 |
| BsoBI | CYCGRG | 1 cut(s) | 538 |
| Bsp143I | GATC | 2 cut(s) | 898, 1089 |
| BspANI | GGCC | 4 cut(s) | 300, 306, 345, 761 |
| BspCNI | CTCAG | 1 cut(s) | 589 |
| BspFNI | CGCG | 3 cut(s) | 473, 497, 515 |
| BspLI | GGNNCC | 6 cut(s) | 199, 241, 313, 346, 900, 1023 |
| BspPI | GGATC | 2 cut(s) | 893, 906 |
| BspT107I | GGYRCC | 2 cut(s) | 239, 311 |
| BspTNI | GGTCTC | 1 cut(s) | 890 |
| BsrBI | CCGCTC | 2 cut(s) | 333, 354 |
| BsrFI | RCCGGY | 2 cut(s) | 296, 317 |
| BsrI | ACTGG | 1 cut(s) | 891 |
| BssAI | RCCGGY | 2 cut(s) | 296, 317 |
| BssECI | CCNNGG | 8 cut(s) | 187, 232, 301, 307, 615, 1017, 1083, 1173 |
| BssMI | GATC | 2 cut(s) | 898, 1089 |
| BssNI | GRCGYC | 2 cut(s) | 168, 312 |
| BssT1I | CCWWGG | 2 cut(s) | 1017, 1173 |
| Bst2UI | CCWGG | 2 cut(s) | 763, 1084 |
| Bst4CI | ACNGT | 3 cut(s) | 254, 841, 987 |
| Bst6I | CTCTTC | 2 cut(s) | 623, 701 |
| BstACI | GRCGYC | 2 cut(s) | 168, 312 |
| BstC8I | GCNNGC | 4 cut(s) | 298, 352, 1147, 1151 |
| BstDEI | CTNAG | 3 cut(s) | 564, 597, 914 |
| BstF5I | GGATG | 2 cut(s) | 537, 1135 |
| BstFNI | CGCG | 3 cut(s) | 473, 497, 515 |
| BstH2I | RGCGCY | 2 cut(s) | 127, 315 |
| BstHHI | GCGC | 2 cut(s) | 126, 314 |
| BstKTI | GATC | 2 cut(s) | 901, 1092 |
| BstMAI | GTCTC | 1 cut(s) | 890 |
| BstMBI | GATC | 2 cut(s) | 898, 1089 |
| BstMCI | CGRYCG | 1 cut(s) | 307 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 318, 351, 503, 512, 772 |
| BstNI | CCWGG | 2 cut(s) | 763, 1084 |
| BstNSI | RCATGY | 2 cut(s) | 782, 1149 |
| BstSCI | CCNGG | 3 cut(s) | 615, 761, 1082 |
| BstSFI | CTRYAG | 1 cut(s) | 789 |
| BstUI | CGCG | 3 cut(s) | 473, 497, 515 |
| BstV1I | GCAGC | 3 cut(s) | 624, 787, 1030 |
| BstV2I | GAAGAC | 2 cut(s) | 617, 983 |
| BstX2I | RGATCY | 1 cut(s) | 898 |
| BstYI | RGATCY | 1 cut(s) | 898 |
| BstZI | CGGCCG | 1 cut(s) | 304 |
| BsuI | GTATCC | 1 cut(s) | 736 |
| BsuRI | GGCC | 4 cut(s) | 300, 306, 345, 761 |
| BtsCI | GGATG | 2 cut(s) | 537, 1135 |
| BtsIMutI | CAGTG | 2 cut(s) | 846, 898 |
| Cac8I | GCNNGC | 4 cut(s) | 298, 352, 1147, 1151 |
| CfoI | GCGC | 2 cut(s) | 126, 314 |
| Cfr10I | RCCGGY | 2 cut(s) | 296, 317 |
| Cfr13I | GGNCC | 3 cut(s) | 197, 344, 1021 |
| CseI | GACGC | 3 cut(s) | 176, 503, 774 |
| Csp6I | GTAC | 3 cut(s) | 478, 804, 948 |
| CviAII | CATG | 4 cut(s) | 106, 454, 779, 1146 |
| CviQI | GTAC | 3 cut(s) | 478, 804, 948 |
| DdeI | CTNAG | 3 cut(s) | 564, 597, 914 |
| DinI | GGCGCC | 1 cut(s) | 313 |
| DpnI | GATC | 2 cut(s) | 900, 1091 |
| DpnII | GATC | 2 cut(s) | 898, 1089 |
| EaeI | YGGCCR | 1 cut(s) | 304 |
| EagI | CGGCCG | 1 cut(s) | 304 |
| Eam1104I | CTCTTC | 2 cut(s) | 623, 701 |
| EarI | CTCTTC | 2 cut(s) | 623, 701 |
| EclXI | CGGCCG | 1 cut(s) | 304 |
| Eco130I | CCWWGG | 2 cut(s) | 1017, 1173 |
| Eco31I | GGTCTC | 1 cut(s) | 890 |
| Eco47I | GGWCC | 2 cut(s) | 197, 1021 |
| Eco52I | CGGCCG | 1 cut(s) | 304 |
| Eco88I | CYCGRG | 1 cut(s) | 538 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1021 |
| EcoRII | CCWGG | 2 cut(s) | 761, 1082 |
| EcoT14I | CCWWGG | 2 cut(s) | 1017, 1173 |
| EgeI | GGCGCC | 1 cut(s) | 313 |
| EheI | GGCGCC | 1 cut(s) | 313 |
| ErhI | CCWWGG | 2 cut(s) | 1017, 1173 |
| FaeI | CATG | 4 cut(s) | 109, 457, 782, 1149 |
| FaqI | GGGAC | 1 cut(s) | 850 |
| FatI | CATG | 4 cut(s) | 105, 453, 778, 1145 |
| FauI | CCCGC | 4 cut(s) | 288, 338, 355, 359 |
| FauNDI | CATATG | 1 cut(s) | 1110 |
| FblI | GTMKAC | 1 cut(s) | 792 |
| Fnu4HI | GCNGC | 8 cut(s) | 171, 238, 498, 516, 638, 776, 1041, 1044 |
| FokI | GGATG | 2 cut(s) | 544, 1142 |
| Fsp4HI | GCNGC | 8 cut(s) | 171, 238, 498, 516, 638, 776, 1041, 1044 |
| FspBI | CTAG | 4 cut(s) | 767, 951, 981, 1139 |
| GlaI | GCGC | 2 cut(s) | 125, 313 |
| GluI | GCNGC | 8 cut(s) | 171, 238, 498, 516, 638, 776, 1041, 1044 |
| GsaI | CCCAGC | 2 cut(s) | 247, 1167 |
| HaeII | RGCGCY | 2 cut(s) | 127, 315 |
| HaeIII | GGCC | 4 cut(s) | 300, 306, 345, 761 |
| HapII | CCGG | 4 cut(s) | 297, 318, 617, 740 |
| HgaI | GACGC | 3 cut(s) | 176, 503, 774 |
| HhaI | GCGC | 2 cut(s) | 126, 314 |
| Hin1I | GRCGYC | 2 cut(s) | 168, 312 |
| Hin1II | CATG | 4 cut(s) | 109, 457, 782, 1149 |
| Hin6I | GCGC | 2 cut(s) | 124, 312 |
| HinP1I | GCGC | 2 cut(s) | 124, 312 |
| HinfI | GANTC | 4 cut(s) | 536, 601, 872, 1007 |
| HpaII | CCGG | 4 cut(s) | 297, 318, 617, 740 |
| HphI | GGTGA | 5 cut(s) | 64, 110, 259, 316, 880 |
| Hpy166II | GTNNAC | 2 cut(s) | 511, 793 |
| Hpy188I | TCNGA | 9 cut(s) | 184, 197, 337, 374, 606, 871, 958, 967, 1119 |
| Hpy188III | TCNNGA | 4 cut(s) | 383, 392, 721, 754 |
| Hpy8I | GTNNAC | 2 cut(s) | 511, 793 |
| Hpy99I | CGWCG | 5 cut(s) | 170, 401, 419, 494, 497 |
| HpyAV | CCTTC | 7 cut(s) | 238, 271, 437, 541, 565, 751, 1069 |
| HpyCH4III | ACNGT | 3 cut(s) | 254, 841, 987 |
| HpyCH4IV | ACGT | 1 cut(s) | 291 |
| HpyCH4V | TGCA | 3 cut(s) | 818, 1046, 1149 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 318, 351, 503, 512, 772 |
| HpyF3I | CTNAG | 3 cut(s) | 564, 597, 914 |
| HpySE526I | ACGT | 1 cut(s) | 291 |
| Hsp92I | GRCGYC | 2 cut(s) | 168, 312 |
| Hsp92II | CATG | 4 cut(s) | 109, 457, 782, 1149 |
| HspAI | GCGC | 2 cut(s) | 124, 312 |
| KasI | GGCGCC | 1 cut(s) | 311 |
| KroI | GCCGGC | 1 cut(s) | 296 |
| KroNI | GCCGGC | 1 cut(s) | 298 |
| Kzo9I | GATC | 2 cut(s) | 898, 1089 |
| LmnI | GCTCC | 3 cut(s) | 338, 359, 374 |
| Lsp1109I | GCAGC | 3 cut(s) | 624, 787, 1030 |
| LweI | GCATC | 2 cut(s) | 201, 493 |
| MaeI | CTAG | 4 cut(s) | 767, 951, 981, 1139 |
| MaeII | ACGT | 1 cut(s) | 291 |
| MaeIII | GTNAC | 2 cut(s) | 254, 410 |
| MalI | GATC | 2 cut(s) | 900, 1091 |
| MbiI | CCGCTC | 2 cut(s) | 333, 354 |
| MboI | GATC | 2 cut(s) | 898, 1089 |
| MboII | GAAGA | 8 cut(s) | 580, 619, 622, 640, 709, 718, 988, 1132 |
| MflI | RGATCY | 1 cut(s) | 898 |
| MluCI | AATT | 1 cut(s) | 854 |
| Mly113I | GGCGCC | 1 cut(s) | 312 |
| MlyI | GAGTC | 2 cut(s) | 530, 1016 |
| MmeI | TCCRAC | 5 cut(s) | 115, 207, 360, 1013, 1032 |
| MroNI | GCCGGC | 1 cut(s) | 296 |
| MseI | TTAA | 2 cut(s) | 77, 1095 |
| MslI | CAYNNNNRTG | 1 cut(s) | 893 |
| MspI | CCGG | 4 cut(s) | 297, 318, 617, 740 |
| MspR9I | CCNGG | 3 cut(s) | 617, 763, 1084 |
| MvaI | CCWGG | 2 cut(s) | 763, 1084 |
| MvnI | CGCG | 3 cut(s) | 473, 497, 515 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 318, 351, 503, 512, 772 |
| NaeI | GCCGGC | 1 cut(s) | 298 |
| NarI | GGCGCC | 1 cut(s) | 312 |
| NciI | CCSGG | 1 cut(s) | 617 |
| NdeI | CATATG | 1 cut(s) | 1110 |
| NdeII | GATC | 2 cut(s) | 898, 1089 |
| NgoMIV | GCCGGC | 1 cut(s) | 296 |
| NlaIII | CATG | 4 cut(s) | 109, 457, 782, 1149 |
| NlaIV | GGNNCC | 6 cut(s) | 199, 241, 313, 346, 900, 1023 |
| NmeAIII | GCCGAG | 4 cut(s) | 168, 213, 282, 332 |
| NspI | RCATGY | 2 cut(s) | 782, 1149 |
| OliI | CACNNNNGTG | 1 cut(s) | 893 |
| PaeI | GCATGC | 1 cut(s) | 1149 |
| PaeR7I | CTCGAG | 1 cut(s) | 538 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 477, 486 |
| PdiI | GCCGGC | 1 cut(s) | 298 |
| PfeI | GAWTC | 2 cut(s) | 601, 872 |
| PkrI | GCNGC | 8 cut(s) | 172, 239, 499, 517, 639, 777, 1042, 1045 |
| PleI | GAGTC | 2 cut(s) | 530, 1015 |
| PluTI | GGCGCC | 1 cut(s) | 315 |
| PpsI | GAGTC | 2 cut(s) | 530, 1015 |
| PpuMI | RGGWCCY | 1 cut(s) | 1021 |
| Psp5II | RGGWCCY | 1 cut(s) | 1021 |
| Psp6I | CCWGG | 2 cut(s) | 761, 1082 |
| PspFI | CCCAGC | 2 cut(s) | 243, 1163 |
| PspGI | CCWGG | 2 cut(s) | 761, 1082 |
| PspN4I | GGNNCC | 6 cut(s) | 199, 241, 313, 346, 900, 1023 |
| PspPI | GGNCC | 3 cut(s) | 197, 344, 1021 |
| PspPPI | RGGWCCY | 1 cut(s) | 1021 |
| PspXI | VCTCGAGB | 1 cut(s) | 538 |
| PsuI | RGATCY | 1 cut(s) | 898 |
| RsaI | GTAC | 3 cut(s) | 479, 805, 949 |
| RsaNI | GTAC | 3 cut(s) | 478, 804, 948 |
| RseI | CAYNNNNRTG | 1 cut(s) | 893 |
| SaqAI | TTAA | 2 cut(s) | 77, 1095 |
| SatI | GCNGC | 8 cut(s) | 171, 238, 498, 516, 638, 776, 1041, 1044 |
| Sau3AI | GATC | 2 cut(s) | 898, 1089 |
| Sau96I | GGNCC | 3 cut(s) | 197, 344, 1021 |
| ScaI | AGTACT | 1 cut(s) | 949 |
| SchI | GAGTC | 2 cut(s) | 530, 1016 |
| ScrFI | CCNGG | 3 cut(s) | 617, 763, 1084 |
| SfaNI | GCATC | 2 cut(s) | 201, 493 |
| SfcI | CTRYAG | 1 cut(s) | 789 |
| SfoI | GGCGCC | 1 cut(s) | 313 |
| Sfr274I | CTCGAG | 1 cut(s) | 538 |
| SinI | GGWCC | 2 cut(s) | 197, 1021 |
| SlaI | CTCGAG | 1 cut(s) | 538 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 893 |
| SmlI | CTYRAG | 1 cut(s) | 538 |
| SmoI | CTYRAG | 1 cut(s) | 538 |
| SpeI | ACTAGT | 1 cut(s) | 950 |
| SphI | GCATGC | 1 cut(s) | 1149 |
| Sse9I | AATT | 1 cut(s) | 854 |
| SspDI | GGCGCC | 1 cut(s) | 311 |
| SspMI | CTAG | 4 cut(s) | 767, 951, 981, 1139 |
| StyD4I | CCNGG | 3 cut(s) | 615, 761, 1082 |
| StyI | CCWWGG | 2 cut(s) | 1017, 1173 |
| TaaI | ACNGT | 3 cut(s) | 254, 841, 987 |
| TaiI | ACGT | 1 cut(s) | 294 |
| TaqI | TCGA | 6 cut(s) | 432, 539, 590, 720, 753, 1010 |
| TasI | AATT | 1 cut(s) | 854 |
| TatI | WGTACW | 2 cut(s) | 803, 947 |
| TauI | GCSGC | 5 cut(s) | 173, 240, 500, 518, 1043 |
| TfiI | GAWTC | 2 cut(s) | 601, 872 |
| Tru1I | TTAA | 2 cut(s) | 77, 1095 |
| Tru9I | TTAA | 2 cut(s) | 77, 1095 |
| TscAI | CASTG | 2 cut(s) | 846, 898 |
| TseI | GCWGC | 3 cut(s) | 637, 775, 1043 |
| TspDTI | ATGAA | 3 cut(s) | 860, 947, 953 |
| TspGWI | ACGGA | 2 cut(s) | 634, 640 |
| TspRI | CASTG | 2 cut(s) | 846, 898 |
| VpaK11BI | GGWCC | 2 cut(s) | 197, 1021 |
| XceI | RCATGY | 2 cut(s) | 782, 1149 |
| XhoI | CTCGAG | 1 cut(s) | 538 |
| XmiI | GTMKAC | 1 cut(s) | 792 |
| XspI | CTAG | 4 cut(s) | 767, 951, 981, 1139 |
| ZrmI | AGTACT | 1 cut(s) | 949 |