Rmu_sc0037591.1_g000001

pre-mRNA-processing factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037591.1
Physical Location & Seq
Reverse (-)
2 .. 1191
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037591.1_g000001.1.cds

Sequence Viewer

Length: 1190 bp
atggttttcatcgcaaccccaaaccacaaaaccataaccctaaatctaaaccccaagaccaccaccctcctcaccttaaagcacaaaatccaacaaacctccctcatgcccatctctcaccagcgcctattcctctcccaaagcctccacttatccacccaaaacgacgccgcactcctctccgacctcggcatcggacccctctccaccctaaccctccacacccccttcctcggcggcacccagccccaccgttactccttcctcaccgccaagcccccgcccaactacgttgccggcctcggccgaggcgccaccggcttcaccacccgctccgacatcggccccgcccgctccactccccctccaatcggagctgttcgggaaaatcctgacgacgaggacaagggttacgacgagaaccagaagttcgatgagtttgaaggaaacgacatggggcttttcgccaacgcggagtacgacaaggacgacgacgcggctgatgccgtttacgcggcggttgatgagaggatggactcgaggaggaaggagaggagagaggctaagaagaaggagatggaggaaaagtcgaacgctgagaatccgaagaagaccccggaggagttgaagaggaagctgcgttccgtgtccgtcaaggaatgggagagcttaccagaaatgggggattattcgtggaagaacaggaagaggaggaagttcgagagctttgttcctgtgccggatacccttttcgagaaggccaggctagagaggcagcatgttgcgtctgtagacccaatgagtacagatttgactgcattgggcgagggaaaggggacagtgatgaagctgaaattggataggctttcggattcggtttcgggtctcaccagtgtggatccaaaggggtatcttagtggtcttttgagtatgaatatgaatgttagtactagttctgatgtttcggatataaagaagactagacagttgtataggagtgtaagagagtcgaagcccaaggacccgtgtggttggattgcggctgcaaggttggaggagatggtggggaagttgaaggaagccagggagatcattaagaaaggctgtcatatgtgtccgaagaatgaggatgtgtggctagaggcatgcaggcttgtcagccccagcgaagccaaggttgttgttgctat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling

Protein Analysis

396

Amino Acids

44.23

Weight (kDa)

8.64

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 239, 311
AccBSI CCGCTC 2 cut(s) 333, 354
AccI GTMKAC 1 cut(s) 792
AccII CGCG 3 cut(s) 473, 497, 515
AclWI GGATC 2 cut(s) 893, 906
AcoI YGGCCR 1 cut(s) 304
AcyI GRCGYC 2 cut(s) 168, 312
AfaI GTAC 3 cut(s) 479, 805, 949
AfiI CCNNNNNNNGG 3 cut(s) 233, 371, 680
AgsI TTSAA 3 cut(s) 443, 628, 1075
AhlI ACTAGT 1 cut(s) 950
AjnI CCWGG 2 cut(s) 761, 1082
AjuI GAANNNNNNNTTGG 2 cut(s) 839, 871
AleI CACNNNNGTG 1 cut(s) 893
AloI GAACNNNNNNTCC 2 cut(s) 625, 657
AluBI AGCT 5 cut(s) 377, 637, 669, 726, 850
AluI AGCT 5 cut(s) 377, 637, 669, 726, 850
Alw26I GTCTC 1 cut(s) 890
AlwI GGATC 2 cut(s) 893, 906
Ama87I CYCGRG 1 cut(s) 538
AoxI GGCC 4 cut(s) 298, 304, 343, 759
ApeKI GCWGC 3 cut(s) 637, 775, 1043
AspLEI GCGC 2 cut(s) 126, 314
AspS9I GGNCC 3 cut(s) 197, 344, 1021
AsuC2I CCSGG 1 cut(s) 617
AsuHPI GGTGA 5 cut(s) 64, 110, 259, 316, 880
AvaI CYCGRG 1 cut(s) 538
AvaII GGWCC 2 cut(s) 197, 1021
BamHI GGATCC 1 cut(s) 898
BanI GGYRCC 2 cut(s) 239, 311
BbsI GAAGAC 2 cut(s) 617, 983
BbvI GCAGC 3 cut(s) 624, 787, 1030
BccI CCATC 4 cut(s) 119, 526, 571, 1054
BceAI ACGGC 1 cut(s) 491
BciT130I CCWGG 2 cut(s) 763, 1084
BciVI GTATCC 1 cut(s) 736
BcnI CCSGG 1 cut(s) 617
BcoDI GTCTC 1 cut(s) 890
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 4 cut(s) 767, 951, 981, 1139
BfmI CTRYAG 1 cut(s) 789
BfoI RGCGCY 2 cut(s) 127, 315
BfuI GTATCC 1 cut(s) 736
BisI GCNGC 8 cut(s) 171, 238, 498, 516, 638, 776, 1041, 1044
BlsI GCNGC 8 cut(s) 172, 239, 499, 517, 639, 777, 1042, 1045
BmcAI AGTACT 1 cut(s) 949
Bme1390I CCNGG 3 cut(s) 617, 763, 1084
Bme18I GGWCC 2 cut(s) 197, 1021
BmeT110I CYCGRG 1 cut(s) 538
BmgT120I GGNCC 3 cut(s) 197, 344, 1021
BmiI GGNNCC 6 cut(s) 199, 241, 313, 346, 900, 1023
BmrFI CCNGG 3 cut(s) 617, 763, 1084
BmsI GCATC 2 cut(s) 201, 493
BpiI GAAGAC 2 cut(s) 617, 983
BpuMI CCSGG 1 cut(s) 617
BsaHI GRCGYC 2 cut(s) 168, 312
BsaI GGTCTC 1 cut(s) 890
BsaJI CCNNGG 8 cut(s) 187, 232, 301, 307, 615, 1017, 1083, 1173
BsaXI ACNNNNNCTCC 6 cut(s) 242, 272, 349, 379, 572, 602
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 371, 680
Bse118I RCCGGY 2 cut(s) 296, 317
Bse1I ACTGG 1 cut(s) 891
BseBI CCWGG 2 cut(s) 763, 1084
BseDI CCNNGG 8 cut(s) 187, 232, 301, 307, 615, 1017, 1083, 1173
BseGI GGATG 2 cut(s) 537, 1135
BseLI CCNNNNNNNGG 3 cut(s) 233, 371, 680
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 1 cut(s) 891
BseRI GAGGAG 7 cut(s) 59, 167, 556, 568, 635, 724, 1070
BseX3I CGGCCG 1 cut(s) 304
BseXI GCAGC 3 cut(s) 624, 787, 1030
BseYI CCCAGC 2 cut(s) 243, 1163
Bsh1236I CGCG 3 cut(s) 473, 497, 515
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 4 cut(s) 300, 306, 345, 761
BshNI GGYRCC 2 cut(s) 239, 311
BsiEI CGRYCG 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 538
BsiSI CCGG 4 cut(s) 297, 318, 617, 740
BslFI GGGAC 1 cut(s) 850
BslI CCNNNNNNNGG 3 cut(s) 233, 371, 680
BsmAI GTCTC 1 cut(s) 890
BsmFI GGGAC 1 cut(s) 850
BsnI GGCC 4 cut(s) 300, 306, 345, 761
Bso31I GGTCTC 1 cut(s) 890
BsoBI CYCGRG 1 cut(s) 538
Bsp143I GATC 2 cut(s) 898, 1089
BspANI GGCC 4 cut(s) 300, 306, 345, 761
BspCNI CTCAG 1 cut(s) 589
BspFNI CGCG 3 cut(s) 473, 497, 515
BspLI GGNNCC 6 cut(s) 199, 241, 313, 346, 900, 1023
BspPI GGATC 2 cut(s) 893, 906
BspT107I GGYRCC 2 cut(s) 239, 311
BspTNI GGTCTC 1 cut(s) 890
BsrBI CCGCTC 2 cut(s) 333, 354
BsrFI RCCGGY 2 cut(s) 296, 317
BsrI ACTGG 1 cut(s) 891
BssAI RCCGGY 2 cut(s) 296, 317
BssECI CCNNGG 8 cut(s) 187, 232, 301, 307, 615, 1017, 1083, 1173
BssMI GATC 2 cut(s) 898, 1089
BssNI GRCGYC 2 cut(s) 168, 312
BssT1I CCWWGG 2 cut(s) 1017, 1173
Bst2UI CCWGG 2 cut(s) 763, 1084
Bst4CI ACNGT 3 cut(s) 254, 841, 987
Bst6I CTCTTC 2 cut(s) 623, 701
BstACI GRCGYC 2 cut(s) 168, 312
BstC8I GCNNGC 4 cut(s) 298, 352, 1147, 1151
BstDEI CTNAG 3 cut(s) 564, 597, 914
BstF5I GGATG 2 cut(s) 537, 1135
BstFNI CGCG 3 cut(s) 473, 497, 515
BstH2I RGCGCY 2 cut(s) 127, 315
BstHHI GCGC 2 cut(s) 126, 314
BstKTI GATC 2 cut(s) 901, 1092
BstMAI GTCTC 1 cut(s) 890
BstMBI GATC 2 cut(s) 898, 1089
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 5 cut(s) 318, 351, 503, 512, 772
BstNI CCWGG 2 cut(s) 763, 1084
BstNSI RCATGY 2 cut(s) 782, 1149
BstSCI CCNGG 3 cut(s) 615, 761, 1082
BstSFI CTRYAG 1 cut(s) 789
BstUI CGCG 3 cut(s) 473, 497, 515
BstV1I GCAGC 3 cut(s) 624, 787, 1030
BstV2I GAAGAC 2 cut(s) 617, 983
BstX2I RGATCY 1 cut(s) 898
BstYI RGATCY 1 cut(s) 898
BstZI CGGCCG 1 cut(s) 304
BsuI GTATCC 1 cut(s) 736
BsuRI GGCC 4 cut(s) 300, 306, 345, 761
BtsCI GGATG 2 cut(s) 537, 1135
BtsIMutI CAGTG 2 cut(s) 846, 898
Cac8I GCNNGC 4 cut(s) 298, 352, 1147, 1151
CfoI GCGC 2 cut(s) 126, 314
Cfr10I RCCGGY 2 cut(s) 296, 317
Cfr13I GGNCC 3 cut(s) 197, 344, 1021
CseI GACGC 3 cut(s) 176, 503, 774
Csp6I GTAC 3 cut(s) 478, 804, 948
CviAII CATG 4 cut(s) 106, 454, 779, 1146
CviQI GTAC 3 cut(s) 478, 804, 948
DdeI CTNAG 3 cut(s) 564, 597, 914
DinI GGCGCC 1 cut(s) 313
DpnI GATC 2 cut(s) 900, 1091
DpnII GATC 2 cut(s) 898, 1089
EaeI YGGCCR 1 cut(s) 304
EagI CGGCCG 1 cut(s) 304
Eam1104I CTCTTC 2 cut(s) 623, 701
EarI CTCTTC 2 cut(s) 623, 701
EclXI CGGCCG 1 cut(s) 304
Eco130I CCWWGG 2 cut(s) 1017, 1173
Eco31I GGTCTC 1 cut(s) 890
Eco47I GGWCC 2 cut(s) 197, 1021
Eco52I CGGCCG 1 cut(s) 304
Eco88I CYCGRG 1 cut(s) 538
EcoO109I RGGNCCY 1 cut(s) 1021
EcoRII CCWGG 2 cut(s) 761, 1082
EcoT14I CCWWGG 2 cut(s) 1017, 1173
EgeI GGCGCC 1 cut(s) 313
EheI GGCGCC 1 cut(s) 313
ErhI CCWWGG 2 cut(s) 1017, 1173
FaeI CATG 4 cut(s) 109, 457, 782, 1149
FaqI GGGAC 1 cut(s) 850
FatI CATG 4 cut(s) 105, 453, 778, 1145
FauI CCCGC 4 cut(s) 288, 338, 355, 359
FauNDI CATATG 1 cut(s) 1110
FblI GTMKAC 1 cut(s) 792
Fnu4HI GCNGC 8 cut(s) 171, 238, 498, 516, 638, 776, 1041, 1044
FokI GGATG 2 cut(s) 544, 1142
Fsp4HI GCNGC 8 cut(s) 171, 238, 498, 516, 638, 776, 1041, 1044
FspBI CTAG 4 cut(s) 767, 951, 981, 1139
GlaI GCGC 2 cut(s) 125, 313
GluI GCNGC 8 cut(s) 171, 238, 498, 516, 638, 776, 1041, 1044
GsaI CCCAGC 2 cut(s) 247, 1167
HaeII RGCGCY 2 cut(s) 127, 315
HaeIII GGCC 4 cut(s) 300, 306, 345, 761
HapII CCGG 4 cut(s) 297, 318, 617, 740
HgaI GACGC 3 cut(s) 176, 503, 774
HhaI GCGC 2 cut(s) 126, 314
Hin1I GRCGYC 2 cut(s) 168, 312
Hin1II CATG 4 cut(s) 109, 457, 782, 1149
Hin6I GCGC 2 cut(s) 124, 312
HinP1I GCGC 2 cut(s) 124, 312
HinfI GANTC 4 cut(s) 536, 601, 872, 1007
HpaII CCGG 4 cut(s) 297, 318, 617, 740
HphI GGTGA 5 cut(s) 64, 110, 259, 316, 880
Hpy166II GTNNAC 2 cut(s) 511, 793
Hpy188I TCNGA 9 cut(s) 184, 197, 337, 374, 606, 871, 958, 967, 1119
Hpy188III TCNNGA 4 cut(s) 383, 392, 721, 754
Hpy8I GTNNAC 2 cut(s) 511, 793
Hpy99I CGWCG 5 cut(s) 170, 401, 419, 494, 497
HpyAV CCTTC 7 cut(s) 238, 271, 437, 541, 565, 751, 1069
HpyCH4III ACNGT 3 cut(s) 254, 841, 987
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 3 cut(s) 818, 1046, 1149
HpyF10VI GCNNNNNNNGC 5 cut(s) 318, 351, 503, 512, 772
HpyF3I CTNAG 3 cut(s) 564, 597, 914
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 2 cut(s) 168, 312
Hsp92II CATG 4 cut(s) 109, 457, 782, 1149
HspAI GCGC 2 cut(s) 124, 312
KasI GGCGCC 1 cut(s) 311
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
Kzo9I GATC 2 cut(s) 898, 1089
LmnI GCTCC 3 cut(s) 338, 359, 374
Lsp1109I GCAGC 3 cut(s) 624, 787, 1030
LweI GCATC 2 cut(s) 201, 493
MaeI CTAG 4 cut(s) 767, 951, 981, 1139
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 254, 410
MalI GATC 2 cut(s) 900, 1091
MbiI CCGCTC 2 cut(s) 333, 354
MboI GATC 2 cut(s) 898, 1089
MboII GAAGA 8 cut(s) 580, 619, 622, 640, 709, 718, 988, 1132
MflI RGATCY 1 cut(s) 898
MluCI AATT 1 cut(s) 854
Mly113I GGCGCC 1 cut(s) 312
MlyI GAGTC 2 cut(s) 530, 1016
MmeI TCCRAC 5 cut(s) 115, 207, 360, 1013, 1032
MroNI GCCGGC 1 cut(s) 296
MseI TTAA 2 cut(s) 77, 1095
MslI CAYNNNNRTG 1 cut(s) 893
MspI CCGG 4 cut(s) 297, 318, 617, 740
MspR9I CCNGG 3 cut(s) 617, 763, 1084
MvaI CCWGG 2 cut(s) 763, 1084
MvnI CGCG 3 cut(s) 473, 497, 515
MwoI GCNNNNNNNGC 5 cut(s) 318, 351, 503, 512, 772
NaeI GCCGGC 1 cut(s) 298
NarI GGCGCC 1 cut(s) 312
NciI CCSGG 1 cut(s) 617
NdeI CATATG 1 cut(s) 1110
NdeII GATC 2 cut(s) 898, 1089
NgoMIV GCCGGC 1 cut(s) 296
NlaIII CATG 4 cut(s) 109, 457, 782, 1149
NlaIV GGNNCC 6 cut(s) 199, 241, 313, 346, 900, 1023
NmeAIII GCCGAG 4 cut(s) 168, 213, 282, 332
NspI RCATGY 2 cut(s) 782, 1149
OliI CACNNNNGTG 1 cut(s) 893
PaeI GCATGC 1 cut(s) 1149
PaeR7I CTCGAG 1 cut(s) 538
PcsI WCGNNNNNNNCGW 2 cut(s) 477, 486
PdiI GCCGGC 1 cut(s) 298
PfeI GAWTC 2 cut(s) 601, 872
PkrI GCNGC 8 cut(s) 172, 239, 499, 517, 639, 777, 1042, 1045
PleI GAGTC 2 cut(s) 530, 1015
PluTI GGCGCC 1 cut(s) 315
PpsI GAGTC 2 cut(s) 530, 1015
PpuMI RGGWCCY 1 cut(s) 1021
Psp5II RGGWCCY 1 cut(s) 1021
Psp6I CCWGG 2 cut(s) 761, 1082
PspFI CCCAGC 2 cut(s) 243, 1163
PspGI CCWGG 2 cut(s) 761, 1082
PspN4I GGNNCC 6 cut(s) 199, 241, 313, 346, 900, 1023
PspPI GGNCC 3 cut(s) 197, 344, 1021
PspPPI RGGWCCY 1 cut(s) 1021
PspXI VCTCGAGB 1 cut(s) 538
PsuI RGATCY 1 cut(s) 898
RsaI GTAC 3 cut(s) 479, 805, 949
RsaNI GTAC 3 cut(s) 478, 804, 948
RseI CAYNNNNRTG 1 cut(s) 893
SaqAI TTAA 2 cut(s) 77, 1095
SatI GCNGC 8 cut(s) 171, 238, 498, 516, 638, 776, 1041, 1044
Sau3AI GATC 2 cut(s) 898, 1089
Sau96I GGNCC 3 cut(s) 197, 344, 1021
ScaI AGTACT 1 cut(s) 949
SchI GAGTC 2 cut(s) 530, 1016
ScrFI CCNGG 3 cut(s) 617, 763, 1084
SfaNI GCATC 2 cut(s) 201, 493
SfcI CTRYAG 1 cut(s) 789
SfoI GGCGCC 1 cut(s) 313
Sfr274I CTCGAG 1 cut(s) 538
SinI GGWCC 2 cut(s) 197, 1021
SlaI CTCGAG 1 cut(s) 538
SmiMI CAYNNNNRTG 1 cut(s) 893
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
SpeI ACTAGT 1 cut(s) 950
SphI GCATGC 1 cut(s) 1149
Sse9I AATT 1 cut(s) 854
SspDI GGCGCC 1 cut(s) 311
SspMI CTAG 4 cut(s) 767, 951, 981, 1139
StyD4I CCNGG 3 cut(s) 615, 761, 1082
StyI CCWWGG 2 cut(s) 1017, 1173
TaaI ACNGT 3 cut(s) 254, 841, 987
TaiI ACGT 1 cut(s) 294
TaqI TCGA 6 cut(s) 432, 539, 590, 720, 753, 1010
TasI AATT 1 cut(s) 854
TatI WGTACW 2 cut(s) 803, 947
TauI GCSGC 5 cut(s) 173, 240, 500, 518, 1043
TfiI GAWTC 2 cut(s) 601, 872
Tru1I TTAA 2 cut(s) 77, 1095
Tru9I TTAA 2 cut(s) 77, 1095
TscAI CASTG 2 cut(s) 846, 898
TseI GCWGC 3 cut(s) 637, 775, 1043
TspDTI ATGAA 3 cut(s) 860, 947, 953
TspGWI ACGGA 2 cut(s) 634, 640
TspRI CASTG 2 cut(s) 846, 898
VpaK11BI GGWCC 2 cut(s) 197, 1021
XceI RCATGY 2 cut(s) 782, 1149
XhoI CTCGAG 1 cut(s) 538
XmiI GTMKAC 1 cut(s) 792
XspI CTAG 4 cut(s) 767, 951, 981, 1139
ZrmI AGTACT 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.