Rh6AG201800

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000856
Physical Location & Seq
Reverse (-)
36160488 .. 36171612
11125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG201800.1

Sequence Viewer

Length: 1680 bp
ATGCAGACTAATCTAAAGCATCCACCTAGTTGGATTGCGGCTGCGAGGTTGGAGAAAGTGGCGGGGAATATTCAAGCAGCAAGGCAATTGATCCAGAAAGGGTGTGAGGAATGTCCCAAGAGTGAGGATGTGTGGTTGGAGGCATGTAGGCTTGCCCGTCCTGATGGAGCCAAGGCTGTGATTGCTGCTGGAGTCAAGTCGATACCCAATTCAGTTAAGCTGTGGATGCAGGCGGCGAAATTGGAGCATGATGACTCGAATAAGAGTAGGGTGTTGAGGAAAGGGTTGGAACACATTCCTGATTCTGTTAGGCTGTGGAAGGCGGTGGTGGAGCTGGCAAATGAGGAGGATGCCAGACTTTTGCTTCAAAGGGTTGTGGAGTGTTGTCTTTTTCACATTGCGTTGTGGCTTGCACTAGCGAGATTGGAAACTTATGAAAATGCCAGGAAGGTCCTTAACAAGGCTGGCGAGAAGCTTTCGAAGGAGCCTGCCATTTGTATTACTGCAGCAAAGTTGGAAGAAGCTAATGGGAACACATTAACAGTTGCGAACATTATTGAAAGGGGTATAAGGGCTTTGCAAAGAGAGGGGTTGGTGATTGATAGAGAAGCATGGATGAAGGAGGCTAAAACTGCCGAGCGAGCAGGGTCTGTGGCAACTTGCCAAGCCATTATTCGGAACACAATTGGGATTGGTGTGGAGGAAGAAGATAGGAGAGGACATGGGTTGCTGATACAGAGGAGTGCAAGAAACGTGGTTCCATTGAATGATGTAGAATGTAAGAAGAGCATATGGCTTAAAGCAGCACAGCTTGAAAAGAGCCATGGGACAAGGAAATCTCTTGATGCCCTGCTTCCTAAAGCATTTACCTACCAATCACAGGCTGAAGTCTTATGGCTTATGGGTGCTAAGGAGAAGTGGCTTGCTGGGGACGTCCCTGCTGCCCGTGCAATCCTCCAAGAAGCTTATGCTGCCATTTCGAATTCTGAAGAAATTTGGCTTGCTGCGTTTAAGCTTGAATTTGAGAATCATGAACCTGAGAGAGCTAGGATGCTTCTTGCCAAAGCCCGAGAAAGGGGAGGAACAGAGAGAGTATGGATGAAATCAACAATCGTTGAAAGAGAATTAGGGAACCTCGATGAGGAGAGGAAGTTGCTTGTTGAAGGATTGAAGTGCTTCCCTTCGTTCTTTAAATTGTGGTTGATGCTTGGACAGCTAGAGGAACGGCTTAACCATTTGGAAAAAGCCAAGGAGGCTTATGACTCGGGTCTTAAGCACTACTCCAATTCTATACCACTCTGGCTTTCTCTTGCAAATCTTGAAGAGAAGATGAATGGGCTGAGTAAAGCTCGTGCAGTTCTTACGATGGCCAGGAAGAAAAATCCTCAGAACCCTGAACTGTGGCTTGCTACTGTTCGAGCTGAATTGAGGCATGGTAATAAGAGGGAAGCTGATATTTTGATGGCAAAGGCCTTGCAGGAGTGTTCCAATAGTGGTATCTTGTGGGCAGCTTCTATTGAGATGGTACCCCGTCCCCAAAGGAAGACCAAAAGTATGGATGCTCTCAAGAAATGTGATCACGATCCCCATGTCATTGCTGTTAAAACCATGATGCAGCAACTTAATGTTTACAACATAAGGATCAATTCACAATTACACAAACACATACCAAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

559

Amino Acids

62.99

Weight (kDa)

9.24

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAT_PRP39_N PF23240 394 - 507 1.2e-07 PRP39 N-terminal HAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 936
Acc65I GGTACC 1 cut(s) 1525
AccB1I GGYRCC 1 cut(s) 1525
AciI CCGC 4 cut(s) 38, 62, 233, 323
AclWI GGATC 3 cut(s) 85, 1577, 1649
AcoI YGGCCR 1 cut(s) 1368
AcsI RAATTY 3 cut(s) 982, 993, 1019
AcuI CTGAAG 2 cut(s) 906, 1008
AcyI GRCGYC 1 cut(s) 933
AfaI GTAC 1 cut(s) 1527
AfiI CCNNNNNNNGG 6 cut(s) 460, 675, 880, 1074, 1075, 1141
AflII CTTAAG 1 cut(s) 1271
AjnI CCWGG 2 cut(s) 443, 1370
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
AlwI GGATC 3 cut(s) 85, 1577, 1649
AlwNI CAGNNNCTG 1 cut(s) 650
Ama87I CYCGRG 2 cut(s) 1068, 1264
AoxI GGCC 2 cut(s) 1368, 1470
ApoI RAATTY 3 cut(s) 982, 993, 1019
Asp700I GAANNNNTTC 2 cut(s) 294, 1175
Asp718I GGTACC 1 cut(s) 1525
AspS9I GGNCC 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 607
AsuII TTCGAA 2 cut(s) 479, 980
AvaI CYCGRG 2 cut(s) 1068, 1264
AvaII GGWCC 1 cut(s) 451
BalI TGGCCA 1 cut(s) 1370
BanI GGYRCC 1 cut(s) 1525
BauI CACGAG 1 cut(s) 1350
BbsI GAAGAC 1 cut(s) 1550
BccI CCATC 4 cut(s) 158, 1360, 1456, 1516
BceAI ACGGC 1 cut(s) 1241
BciT130I CCWGG 2 cut(s) 445, 1372
BclI TGATCA 1 cut(s) 1576
BfaI CTAG 4 cut(s) 27, 416, 1047, 1217
BfmI CTRYAG 1 cut(s) 504
BfrI CTTAAG 1 cut(s) 1271
BglI GCCNNNNNGGC 1 cut(s) 1253
Bme1390I CCNGG 2 cut(s) 445, 1372
Bme18I GGWCC 1 cut(s) 451
BmeT110I CYCGRG 2 cut(s) 1068, 1264
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 5 cut(s) 169, 486, 759, 1133, 1527
BmrFI CCNGG 2 cut(s) 445, 1372
BmsI GCATC 8 cut(s) 28, 216, 340, 835, 1041, 1194, 1549, 1602
BoxI GACNNNNGTC 1 cut(s) 1266
BpiI GAAGAC 1 cut(s) 1550
BplI GAGNNNNNCTC 2 cut(s) 1333, 1365
BpmI CTGGAG 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 909
Bpu14I TTCGAA 2 cut(s) 479, 980
BpuEI CTTGAG 1 cut(s) 1550
BsaBI GATNNNNATC 1 cut(s) 1581
BsaHI GRCGYC 1 cut(s) 933
BsaJI CCNNGG 3 cut(s) 171, 823, 1248
BsaXI ACNNNNNCTCC 2 cut(s) 1136, 1166
Bsc4I CCNNNNNNNGG 6 cut(s) 460, 675, 880, 1074, 1075, 1141
Bse3DI GCAATG 2 cut(s) 396, 1593
Bse8I GATNNNNATC 1 cut(s) 1581
BseBI CCWGG 2 cut(s) 445, 1372
BseDI CCNNGG 3 cut(s) 171, 823, 1248
BseGI GGATG 8 cut(s) 19, 133, 231, 355, 621, 1056, 1104, 1564
BseJI GATNNNNATC 1 cut(s) 1581
BseLI CCNNNNNNNGG 6 cut(s) 460, 675, 880, 1074, 1075, 1141
BseMI GCAATG 2 cut(s) 396, 1593
BseMII CTCAG 3 cut(s) 1029, 1331, 1400
BseRI GAGGAG 3 cut(s) 359, 754, 1157
BseYI CCCAGC 1 cut(s) 926
BsgI GTGCAG 1 cut(s) 1374
BshFI GGCC 2 cut(s) 1370, 1472
BshNI GGYRCC 1 cut(s) 1525
BsiHKCI CYCGRG 2 cut(s) 1068, 1264
BslFI GGGAC 5 cut(s) 99, 841, 920, 944, 1518
BslI CCNNNNNNNGG 6 cut(s) 460, 675, 880, 1074, 1075, 1141
BsmFI GGGAC 5 cut(s) 99, 841, 920, 944, 1518
BsnI GGCC 2 cut(s) 1370, 1472
BsoBI CYCGRG 2 cut(s) 1068, 1264
Bsp119I TTCGAA 2 cut(s) 479, 980
Bsp143I GATC 4 cut(s) 90, 1576, 1582, 1641
Bsp19I CCATGG 1 cut(s) 823
BspACI CCGC 4 cut(s) 38, 62, 233, 323
BspANI GGCC 2 cut(s) 1370, 1472
BspCNI CTCAG 3 cut(s) 1030, 1332, 1399
BspHI TCATGA 1 cut(s) 1030
BspLI GGNNCC 5 cut(s) 169, 486, 759, 1133, 1527
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 3 cut(s) 85, 1577, 1649
BspQI GCTCTTC 1 cut(s) 779
BspT104I TTCGAA 2 cut(s) 479, 980
BspT107I GGYRCC 1 cut(s) 1525
BspTI CTTAAG 1 cut(s) 1271
BsrDI GCAATG 2 cut(s) 396, 1593
BssECI CCNNGG 3 cut(s) 171, 823, 1248
BssMI GATC 4 cut(s) 90, 1576, 1582, 1641
BssNI GRCGYC 1 cut(s) 933
BssSI CACGAG 1 cut(s) 1350
BssT1I CCWWGG 3 cut(s) 171, 823, 1248
Bst2BI CACGAG 1 cut(s) 1350
Bst2UI CCWGG 2 cut(s) 445, 1372
Bst4CI ACNGT 3 cut(s) 544, 1401, 1414
Bst6I CTCTTC 2 cut(s) 779, 1317
BstACI GRCGYC 1 cut(s) 933
BstAFI CTTAAG 1 cut(s) 1271
BstBI TTCGAA 2 cut(s) 479, 980
BstDEI CTNAG 4 cut(s) 909, 1038, 1340, 1386
BstDSI CCRYGG 1 cut(s) 823
BstENI CCTNNNNNAGG 2 cut(s) 458, 1139
BstF5I GGATG 8 cut(s) 19, 133, 231, 355, 621, 1056, 1104, 1564
BstKTI GATC 4 cut(s) 93, 1579, 1585, 1644
BstMBI GATC 4 cut(s) 90, 1576, 1582, 1641
BstMWI GCNNNNNNNGC 8 cut(s) 182, 226, 632, 641, 947, 971, 1213, 1253
BstNI CCWGG 2 cut(s) 445, 1372
BstNSI RCATGY 1 cut(s) 147
BstPAI GACNNNNGTC 1 cut(s) 1266
BstSCI CCNGG 2 cut(s) 443, 1370
BstSFI CTRYAG 1 cut(s) 504
BstV2I GAAGAC 1 cut(s) 1550
BstXI CCANNNNNNTGG 2 cut(s) 30, 1555
BsuRI GGCC 2 cut(s) 1370, 1472
BtgI CCRYGG 1 cut(s) 823
BtsCI GGATG 8 cut(s) 19, 133, 231, 355, 621, 1056, 1104, 1564
CaiI CAGNNNCTG 1 cut(s) 650
CciI TCATGA 1 cut(s) 1030
Cfr13I GGNCC 1 cut(s) 451
Csp6I GTAC 1 cut(s) 1526
CspCI CAANNNNNGTGG 2 cut(s) 735, 770
CviAII CATG 9 cut(s) 144, 248, 612, 722, 824, 1031, 1433, 1589, 1609
CviQI GTAC 1 cut(s) 1526
DdeI CTNAG 4 cut(s) 909, 1038, 1340, 1386
DpnI GATC 4 cut(s) 92, 1578, 1584, 1643
DpnII GATC 4 cut(s) 90, 1576, 1582, 1641
DraI TTTAAA 1 cut(s) 1192
EaeI YGGCCR 1 cut(s) 1368
Eam1104I CTCTTC 2 cut(s) 779, 1317
EarI CTCTTC 2 cut(s) 779, 1317
Eco130I CCWWGG 3 cut(s) 171, 823, 1248
Eco147I AGGCCT 1 cut(s) 1472
Eco47I GGWCC 1 cut(s) 451
Eco57I CTGAAG 2 cut(s) 906, 1008
Eco88I CYCGRG 2 cut(s) 1068, 1264
EcoNI CCTNNNNNAGG 2 cut(s) 458, 1139
EcoO109I RGGNCCY 1 cut(s) 451
EcoRI GAATTC 1 cut(s) 982
EcoRII CCWGG 2 cut(s) 443, 1370
EcoT14I CCWWGG 3 cut(s) 171, 823, 1248
ErhI CCWWGG 3 cut(s) 171, 823, 1248
FaeI CATG 9 cut(s) 147, 251, 615, 725, 827, 1034, 1436, 1592, 1612
FaqI GGGAC 5 cut(s) 99, 841, 920, 944, 1518
FatI CATG 9 cut(s) 143, 247, 611, 721, 823, 1030, 1432, 1588, 1608
FauI CCCGC 1 cut(s) 55
FauNDI CATATG 1 cut(s) 791
FbaI TGATCA 1 cut(s) 1576
FokI GGATG 8 cut(s) 6, 140, 238, 362, 628, 1063, 1111, 1571
FspBI CTAG 4 cut(s) 27, 416, 1047, 1217
GsaI CCCAGC 1 cut(s) 930
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 2 cut(s) 1370, 1472
Hin1I GRCGYC 1 cut(s) 933
Hin1II CATG 9 cut(s) 147, 251, 615, 725, 827, 1034, 1436, 1592, 1612
HindIII AAGCTT 3 cut(s) 473, 963, 1013
HinfI GANTC 5 cut(s) 192, 254, 302, 1027, 1262
HphI GGTGA 1 cut(s) 607
Hpy166II GTNNAC 1 cut(s) 1630
Hpy188I TCNGA 3 cut(s) 678, 988, 1389
Hpy188III TCNNGA 8 cut(s) 94, 161, 299, 842, 1031, 1319, 1567, 1580
Hpy8I GTNNAC 1 cut(s) 1630
HpyAV CCTTC 6 cut(s) 313, 442, 475, 613, 1157, 1191
HpyCH4III ACNGT 3 cut(s) 544, 1401, 1414
HpyCH4IV ACGT 2 cut(s) 753, 933
HpyF10VI GCNNNNNNNGC 8 cut(s) 182, 226, 632, 641, 947, 971, 1213, 1253
HpyF3I CTNAG 4 cut(s) 909, 1038, 1340, 1386
HpySE526I ACGT 2 cut(s) 753, 933
Hsp92I GRCGYC 1 cut(s) 933
Hsp92II CATG 9 cut(s) 147, 251, 615, 725, 827, 1034, 1436, 1592, 1612
KpnI GGTACC 1 cut(s) 1529
Ksp22I TGATCA 1 cut(s) 1576
Kzo9I GATC 4 cut(s) 90, 1576, 1582, 1641
LguI GCTCTTC 1 cut(s) 779
LmnI GCTCC 4 cut(s) 167, 244, 331, 484
LweI GCATC 8 cut(s) 28, 216, 340, 835, 1041, 1194, 1549, 1602
MaeI CTAG 4 cut(s) 27, 416, 1047, 1217
MaeII ACGT 2 cut(s) 753, 933
MalI GATC 4 cut(s) 92, 1578, 1584, 1643
MboI GATC 4 cut(s) 90, 1576, 1582, 1641
MboII GAAGA 9 cut(s) 530, 716, 719, 796, 1001, 1334, 1339, 1387, 1555
MfeI CAATTG 2 cut(s) 86, 684
MlsI TGGCCA 1 cut(s) 1370
MluNI TGGCCA 1 cut(s) 1370
MlyI GAGTC 3 cut(s) 201, 248, 1256
MmeI TCCRAC 5 cut(s) 11, 30, 117, 267, 495
Mox20I TGGCCA 1 cut(s) 1370
MroXI GAANNNNTTC 2 cut(s) 294, 1175
MscI TGGCCA 1 cut(s) 1370
Msp20I TGGCCA 1 cut(s) 1370
MspCI CTTAAG 1 cut(s) 1271
MspR9I CCNGG 2 cut(s) 445, 1372
MunI CAATTG 2 cut(s) 86, 684
MvaI CCWGG 2 cut(s) 445, 1372
MwoI GCNNNNNNNGC 8 cut(s) 182, 226, 632, 641, 947, 971, 1213, 1253
NcoI CCATGG 1 cut(s) 823
NdeI CATATG 1 cut(s) 791
NdeII GATC 4 cut(s) 90, 1576, 1582, 1641
NlaIII CATG 9 cut(s) 147, 251, 615, 725, 827, 1034, 1436, 1592, 1612
NlaIV GGNNCC 5 cut(s) 169, 486, 759, 1133, 1527
NmeAIII GCCGAG 1 cut(s) 661
NspI RCATGY 1 cut(s) 147
NspV TTCGAA 2 cut(s) 479, 980
PagI TCATGA 1 cut(s) 1030
PceI AGGCCT 1 cut(s) 1472
PciSI GCTCTTC 1 cut(s) 779
PdmI GAANNNNTTC 2 cut(s) 294, 1175
PfeI GAWTC 2 cut(s) 302, 1027
PleI GAGTC 3 cut(s) 200, 248, 1256
PpsI GAGTC 3 cut(s) 200, 248, 1256
PpuMI RGGWCCY 1 cut(s) 451
PshAI GACNNNNGTC 1 cut(s) 1266
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 2 cut(s) 443, 1370
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 2 cut(s) 443, 1370
PspN4I GGNNCC 5 cut(s) 169, 486, 759, 1133, 1527
PspPI GGNCC 1 cut(s) 451
PspPPI RGGWCCY 1 cut(s) 451
PstI CTGCAG 1 cut(s) 508
PstNI CAGNNNCTG 1 cut(s) 650
RsaI GTAC 1 cut(s) 1527
RsaNI GTAC 1 cut(s) 1526
SapI GCTCTTC 1 cut(s) 779
Sau3AI GATC 4 cut(s) 90, 1576, 1582, 1641
Sau96I GGNCC 1 cut(s) 451
SchI GAGTC 3 cut(s) 201, 248, 1256
ScrFI CCNGG 2 cut(s) 445, 1372
SfaNI GCATC 8 cut(s) 28, 216, 340, 835, 1041, 1194, 1549, 1602
SfcI CTRYAG 1 cut(s) 504
SfuI TTCGAA 2 cut(s) 479, 980
SinI GGWCC 1 cut(s) 451
SmlI CTYRAG 2 cut(s) 1271, 1565
SmoI CTYRAG 2 cut(s) 1271, 1565
SseBI AGGCCT 1 cut(s) 1472
SsiI CCGC 4 cut(s) 38, 62, 233, 323
SspI AATATT 1 cut(s) 70
SspMI CTAG 4 cut(s) 27, 416, 1047, 1217
StuI AGGCCT 1 cut(s) 1472
StyD4I CCNGG 2 cut(s) 443, 1370
StyI CCWWGG 3 cut(s) 171, 823, 1248
TaaI ACNGT 3 cut(s) 544, 1401, 1414
TaiI ACGT 2 cut(s) 756, 936
TaqI TCGA 6 cut(s) 200, 257, 479, 980, 1137, 1417
TauI GCSGC 2 cut(s) 41, 236
TfiI GAWTC 2 cut(s) 302, 1027
TspDTI ATGAA 5 cut(s) 450, 632, 1047, 1115, 1346
Vha464I CTTAAG 1 cut(s) 1271
VpaK11BI GGWCC 1 cut(s) 451
XagI CCTNNNNNAGG 2 cut(s) 458, 1139
XapI RAATTY 3 cut(s) 982, 993, 1019
XceI RCATGY 1 cut(s) 147
XmnI GAANNNNTTC 2 cut(s) 294, 1175
XspI CTAG 4 cut(s) 27, 416, 1047, 1217
ZraI GACGTC 1 cut(s) 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.