Rmu_sc0003080.1_g000020

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003080.1
OG0000856
Physical Location & Seq
Forward (+)
110318 .. 110677
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003080.1_g000020.1.cds

Sequence Viewer

Length: 360 bp
ctgtatacagtttcagttgaggaatgggatcgcatatcggacattggggatgactcagccaggaataagaagaggaagtttgagagctttgtgccggtgcaggatactcttttcgagaaggctaggcaggaacaggagcatgttactgcattggaccccaagagtagggtggcgactggtacagagacgctgtggtcgcaaacaccaattacggatttgactgcagtgggggatggtagaagtactgtgttgtctttgaagttagataggctttcggattctgtttctgggttgatagttgtggaccctaaggggtatctcactgatcttaagagtatgaagattaccagtgatgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

119

Amino Acids

13.22

Weight (kDa)

4.96

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 193
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 1 cut(s) 36
AfaI GTAC 2 cut(s) 181, 244
AfiI CCNNNNNNNGG 1 cut(s) 165
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 1 cut(s) 259
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 154, 304
AvaII GGWCC 2 cut(s) 154, 304
AxyI CCTNAGG 1 cut(s) 309
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 61
BciVI GTATCC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 222
BfrI CTTAAG 1 cut(s) 329
BfuI GTATCC 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 2 cut(s) 154, 304
BmgT120I GGNCC 2 cut(s) 154, 304
BmiI GGNNCC 2 cut(s) 156, 306
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 343
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 181, 348
Bse21I CCTNAGG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 61
BseGI GGATG 2 cut(s) 55, 238
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 2 cut(s) 181, 348
BsgI GTGCAG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
Bsp143I GATC 2 cut(s) 28, 325
BspCNI CTCAG 1 cut(s) 68
BspLI GGNNCC 2 cut(s) 156, 306
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 1 cut(s) 36
BspTI CTTAAG 1 cut(s) 329
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 2 cut(s) 181, 348
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 2 cut(s) 28, 325
BssNAI GTATAC 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 10, 247
Bst6I CTCTTC 1 cut(s) 65
BstAFI CTTAAG 1 cut(s) 329
BstDEI CTNAG 2 cut(s) 55, 309
BstF5I GGATG 2 cut(s) 55, 238
BstKTI GATC 2 cut(s) 31, 328
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 2 cut(s) 28, 325
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 222
BstZ17I GTATAC 1 cut(s) 6
Bsu36I CCTNAGG 1 cut(s) 309
BsuI GTATCC 1 cut(s) 97
BtsCI GGATG 2 cut(s) 55, 238
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 3 cut(s) 231, 321, 355
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 154, 304
CseI GACGC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 180, 243
CviAII CATG 1 cut(s) 140
CviJI RGCY 4 cut(s) 59, 87, 122, 271
CviKI_1 RGCY 4 cut(s) 59, 87, 122, 271
CviQI GTAC 2 cut(s) 180, 243
DdeI CTNAG 2 cut(s) 55, 309
DpnI GATC 2 cut(s) 30, 327
DpnII GATC 2 cut(s) 28, 325
DrdI GACNNNNNNGTC 1 cut(s) 193
DseDI GACNNNNNNGTC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 154, 304
Eco81I CCTNAGG 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 59
EcoT22I ATGCAT 1 cut(s) 358
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 1 cut(s) 143
FaiI YATR 5 cut(s) 6, 35, 141, 338, 358
FatI CATG 1 cut(s) 139
FblI GTMKAC 1 cut(s) 5
FokI GGATG 2 cut(s) 62, 245
FspBI CTAG 1 cut(s) 123
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 196
Hin1II CATG 1 cut(s) 143
HinfI GANTC 2 cut(s) 53, 278
HpaII CCGG 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 6, 304
Hpy188I TCNGA 2 cut(s) 40, 277
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 2 cut(s) 6, 304
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 2 cut(s) 10, 247
HpyCH4V TGCA 4 cut(s) 100, 149, 224, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 2 cut(s) 55, 309
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 2 cut(s) 28, 325
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 8 cut(s) 46, 73, 86, 108, 113, 119, 162, 273
LweI GCATC 1 cut(s) 343
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 142
MalI GATC 2 cut(s) 30, 327
MboI GATC 2 cut(s) 28, 325
MboII GAAGA 2 cut(s) 82, 352
MluCI AATT 1 cut(s) 207
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 2 cut(s) 13, 66
Mph1103I ATGCAT 1 cut(s) 358
MseI TTAA 1 cut(s) 330
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeII GATC 2 cut(s) 28, 325
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 2 cut(s) 156, 306
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 1 cut(s) 143
PfeI GAWTC 1 cut(s) 278
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 2 cut(s) 156, 306
PspPI GGNCC 2 cut(s) 154, 304
PstI CTGCAG 1 cut(s) 226
RsaI GTAC 2 cut(s) 181, 244
RsaNI GTAC 2 cut(s) 180, 243
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 2 cut(s) 28, 325
Sau96I GGNCC 2 cut(s) 154, 304
ScaI AGTACT 1 cut(s) 244
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 61
SetI ASST 1 cut(s) 89
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 2 cut(s) 154, 304
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 1 cut(s) 207
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 2 cut(s) 10, 247
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 207
TatI WGTACW 1 cut(s) 242
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 3 cut(s) 231, 328, 355
TspDTI ATGAA 1 cut(s) 353
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 3 cut(s) 231, 328, 355
Vha464I CTTAAG 1 cut(s) 329
VpaK11BI GGWCC 2 cut(s) 154, 304
XceI RCATGY 1 cut(s) 143
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 123
ZrmI AGTACT 1 cut(s) 244
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.