Rh3CG348500

PRP1 splicing factor, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000856
Physical Location & Seq
Forward (+)
41527602 .. 41528126
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG348500.1

Sequence Viewer

Length: 525 bp
ATGGCTGCTAAGGAGAACTGGCTTGCCGGGGATGTGAATGATGCCAGTATGATCCTTGAAGAAGCTTCTAAATCCCTTCCCAATTCTGAAGAAATTATGATTGCTGCATTTAAGTTAGAGTTTGAAAATCATGAGCAAGAGAGAGCTAAAATGATTCTTGACAAAACCCGAGCAAGGGTAGACAGTGGAAGAGTATGGACGAAATCAGCAATTCTTCAGAGTGAATTAGGGAACTCTAATGAGGAGAAGAAGTTTCTTGAGGAAGGGTTGAAGTGCTTCCCCTCATTCTTTAAATTGTGGTTGATGCTTGGACAGATAGAGGAACGCCTCAATGATTTTCAAAAAGCCAAGACCGCTTATGAATCGGATCTCAAGCACTGCTCCAATTGTATACCGCTCTGGCTTTCTCTAGCAAATCTTGAAGAGAAGAGGAATGGTCTGAGTAAAGCTCGTGCAGTTCTCACAACAGCCAGGAAGAAGAACTCTCGTAATCCTGAACTGTGGCTTGCTGCTGTTCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

174

Amino Acids

19.83

Weight (kDa)

6.76

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 397
AccI GTMKAC 2 cut(s) 180, 391
AciI CCGC 2 cut(s) 354, 395
AclWI GGATC 2 cut(s) 46, 375
AcuI CTGAAG 2 cut(s) 108, 200
AfiI CCNNNNNNNGG 2 cut(s) 174, 175
AgsI TTSAA 6 cut(s) 59, 125, 271, 341, 422, 518
AjnI CCWGG 1 cut(s) 470
AluBI AGCT 4 cut(s) 65, 146, 449, 521
AluI AGCT 4 cut(s) 65, 146, 449, 521
AlwI GGATC 2 cut(s) 46, 375
Ama87I CYCGRG 1 cut(s) 168
ApeKI GCWGC 3 cut(s) 5, 104, 509
Asp700I GAANNNNTTC 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 168
BauI CACGAG 1 cut(s) 450
BbvI GCAGC 2 cut(s) 91, 496
BciT130I CCWGG 1 cut(s) 472
BcnI CCSGG 1 cut(s) 28
BfaI CTAG 1 cut(s) 410
BisI GCNGC 3 cut(s) 6, 105, 510
BlsI GCNGC 3 cut(s) 7, 106, 511
Bme1390I CCNGG 2 cut(s) 28, 472
BmeT110I CYCGRG 1 cut(s) 168
BmrFI CCNGG 2 cut(s) 28, 472
BmsI GCATC 2 cut(s) 31, 294
BplI GAGNNNNNCTC 2 cut(s) 433, 465
Bpu10I CCTNAGC 1 cut(s) 9
BpuEI CTTGAG 2 cut(s) 278, 356
BpuMI CCSGG 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 175
Bse1I ACTGG 2 cut(s) 23, 45
BseBI CCWGG 1 cut(s) 472
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 174, 175
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 2 cut(s) 23, 45
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 91, 496
BsgI GTGCAG 1 cut(s) 474
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 174, 175
BsoBI CYCGRG 1 cut(s) 168
Bsp143I GATC 2 cut(s) 51, 367
BspACI CCGC 2 cut(s) 354, 395
BspCNI CTCAG 1 cut(s) 432
BspHI TCATGA 1 cut(s) 130
BspPI GGATC 2 cut(s) 46, 375
BsrBI CCGCTC 1 cut(s) 397
BsrI ACTGG 2 cut(s) 23, 45
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 51, 367
BssNAI GTATAC 1 cut(s) 392
BssSI CACGAG 1 cut(s) 450
Bst1107I GTATAC 1 cut(s) 392
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 472
Bst4CI ACNGT 2 cut(s) 185, 501
Bst6I CTCTTC 3 cut(s) 184, 417, 422
BstC8I GCNNGC 2 cut(s) 24, 507
BstDEI CTNAG 2 cut(s) 9, 440
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 2 cut(s) 54, 370
BstMBI GATC 2 cut(s) 51, 367
BstMWI GCNNNNNNNGC 2 cut(s) 353, 518
BstNI CCWGG 1 cut(s) 472
BstSCI CCNGG 2 cut(s) 26, 470
BstV1I GCAGC 2 cut(s) 91, 496
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BstZ17I GTATAC 1 cut(s) 392
BtsCI GGATG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 2 cut(s) 190, 376
Cac8I GCNNGC 2 cut(s) 24, 507
CciI TCATGA 1 cut(s) 130
CviAII CATG 1 cut(s) 131
DdeI CTNAG 2 cut(s) 9, 440
DpnI GATC 2 cut(s) 53, 369
DpnII GATC 2 cut(s) 51, 367
DraI TTTAAA 1 cut(s) 292
Eam1104I CTCTTC 3 cut(s) 184, 417, 422
EarI CTCTTC 3 cut(s) 184, 417, 422
Eco57I CTGAAG 2 cut(s) 108, 200
Eco88I CYCGRG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 470
FaeI CATG 1 cut(s) 134
FaiI YATR 6 cut(s) 50, 98, 132, 196, 360, 392
FatI CATG 1 cut(s) 130
FblI GTMKAC 2 cut(s) 180, 391
Fnu4HI GCNGC 3 cut(s) 6, 105, 510
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 3 cut(s) 6, 105, 510
FspBI CTAG 1 cut(s) 410
GluI GCNGC 3 cut(s) 6, 105, 510
HapII CCGG 1 cut(s) 27
Hin1II CATG 1 cut(s) 134
HindIII AAGCTT 2 cut(s) 63, 519
HinfI GANTC 2 cut(s) 154, 362
HpaII CCGG 1 cut(s) 27
Hpy166II GTNNAC 2 cut(s) 181, 392
Hpy188I TCNGA 4 cut(s) 88, 219, 367, 441
Hpy188III TCNNGA 5 cut(s) 131, 158, 257, 419, 494
Hpy8I GTNNAC 2 cut(s) 181, 392
HpyAV CCTTC 2 cut(s) 86, 257
HpyCH4III ACNGT 2 cut(s) 185, 501
HpyCH4V TGCA 2 cut(s) 107, 455
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 518
HpyF3I CTNAG 2 cut(s) 9, 440
Hsp92II CATG 1 cut(s) 134
Kzo9I GATC 2 cut(s) 51, 367
LmnI GCTCC 1 cut(s) 386
LpnPI CCDG 7 cut(s) 4, 40, 58, 385, 457, 484, 507
Lsp1109I GCAGC 2 cut(s) 91, 496
LweI GCATC 2 cut(s) 31, 294
MaeI CTAG 1 cut(s) 410
MalI GATC 2 cut(s) 53, 369
MbiI CCGCTC 1 cut(s) 397
MboI GATC 2 cut(s) 51, 367
MboII GAAGA 9 cut(s) 71, 101, 201, 206, 259, 434, 439, 487, 490
MfeI CAATTG 1 cut(s) 385
MflI RGATCY 1 cut(s) 367
MluCI AATT 6 cut(s) 82, 93, 210, 224, 293, 385
MnlI CCTC 6 cut(s) 235, 253, 292, 313, 338, 423
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 3 cut(s) 111, 291, 523
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 28, 472
MunI CAATTG 1 cut(s) 385
MvaI CCWGG 1 cut(s) 472
MwoI GCNNNNNNNGC 2 cut(s) 353, 518
NciI CCSGG 1 cut(s) 28
NdeII GATC 2 cut(s) 51, 367
NlaIII CATG 1 cut(s) 134
PagI TCATGA 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 154, 362
PkrI GCNGC 3 cut(s) 7, 106, 511
Psp6I CCWGG 1 cut(s) 470
PspGI CCWGG 1 cut(s) 470
PsuI RGATCY 1 cut(s) 367
SaqAI TTAA 3 cut(s) 111, 291, 523
SatI GCNGC 3 cut(s) 6, 105, 510
Sau3AI GATC 2 cut(s) 51, 367
ScrFI CCNGG 2 cut(s) 28, 472
SetI ASST 4 cut(s) 67, 148, 451, 523
SfaNI GCATC 2 cut(s) 31, 294
SmlI CTYRAG 2 cut(s) 257, 371
SmoI CTYRAG 2 cut(s) 257, 371
Sse9I AATT 6 cut(s) 82, 93, 210, 224, 293, 385
SsiI CCGC 2 cut(s) 354, 395
SspMI CTAG 1 cut(s) 410
StyD4I CCNGG 2 cut(s) 26, 470
TaaI ACNGT 2 cut(s) 185, 501
TasI AATT 6 cut(s) 82, 93, 210, 224, 293, 385
TfiI GAWTC 2 cut(s) 154, 362
Tru1I TTAA 3 cut(s) 111, 291, 523
Tru9I TTAA 3 cut(s) 111, 291, 523
TscAI CASTG 2 cut(s) 190, 383
TseI GCWGC 3 cut(s) 5, 104, 509
TspDTI ATGAA 1 cut(s) 375
TspRI CASTG 2 cut(s) 190, 383
XmiI GTMKAC 2 cut(s) 180, 391
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.