RchiOBHm_Chr7g0226921

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000856
Physical Location & Seq
Reverse (-)
50283517 .. 50286471
2955 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20321

Sequence Viewer

Length: 2955 bp
ATGGTTTTCATCGCAACCCCAAACCACAAAACCCTAACCCTAAATCTAAACCCCAAGACCACCACCCTCCTCACCTTAAAGCACCAAATCCAACAAACCTCCCTTATGCCCATCTCTCACCAGCGCCTATTCCTCTCCCAAAGCCTCCACTTATCCACCCAAAACGACGCCGCACTCCTCTCCGACCTCGGCATCGGACCCCTCTCCACCCTAACCCTCCACACCCCCTTCCTCGGCGGCACTCAGCCCCACCGCTACTCCTTCCTCACAGCCAAGCCCCCGCCCAACTACGTCGCCGGCCTCGGCCGCGGCGCCACCGGCTTCACCACCCGCTCCGACATCGGCCCCGCCCGCCCCACTCCCGCTCCAATTGTTCGGGAAAATCCGGACGACGAGGACAAGGGTTACGACGAGAACCAGAAGTTCGACGAGTTTGAAGGAAATGACATGGGGCTTTTCGCCGACGCGGAGTACGACGAGGACGACGACGCGGCTGATGCCGTTTACGCAGCGGTTGATGAGAGGATGGACTCGAGGAGGAAGGAGATGAGAGAAGCTAAGAAGAAGGAGATGGAGGAAAAGTCGAACGCTAAGAATCCAAAGAAGACCCCGGAGGAGTTGAAGAGGAAGCTGCGTTCCGTGTCCGTCAAGGAATGGGAGAGCTTACCAGAAATGGGGGATTATTCGTGGAAGAACAGGAAGAGGAGGAAGTTCGAGAGCTTTGTTCCGGTGCCGGATACCCTTTTCGAGAAGGCCAGGCTGGAGAGGCAGCATGTTGCGTCTGTAGACCCAATGAGTACAGATTTGACTGCATTGGGCGAGGGAAAGGGGACAGTGATGAAGCTGAAATTGGATAGGCTTTCGGATTCGGTTTCGGGTCTCACCAGTGTGGATCCAAAGGGGTATCTTAGTGGTCTTTTGAGTATGAATATGAATGTTAGTACTAGTTCTGATGTTTCGGATATAAAGAAGACTAGACAGTTGTATAGGAGTGTAAGAGAGTCGAAGCCTAAGGACCCGTGTGGTTGGATTGCGGCTGCGAGGTTGGAGGAGATGGTGGGGAAGTTGAAGGAAGCCAGGGAGATCATTAAGAAAGGCTGTCATATGTGTCCAAAGAATGAGGATGTGTGGCTAGAGGCATGCAGGCTTGTCAGCCCCAGCGAAGCCAAGGTTGTTGTTGCTATGGGAGTGAAGCAGATACCGAATTCGGTGGACTTGTGGATGAGGGCTGTGGATTTGGAGCATGATAAGTCGAATAAGAAGAAAGTGTTGCGGAAAGCGCTGGATCAAAGTAATGAAAATCTTCGTTGTGTTAGGCTGTGGAAGGCAGTGATGGATCTCTGTCACGAAGATGACAAGGATATGAAAATTTTGCTTCATAGGGCCGTGGAGGTTTGTCCGTTGGAGGTTCAATTTTGGGTTGCTCTTGCGAGGTCGGAAAGTTATGAGGCTGCCAAGATGATTCTTAATAATGCTAGAGTGCATCTTCCGAAAGAGCGCGCCATTTGGGTTGAAGCAGCCAAGTTGGAAGAAGTTAGGGGGAATGTGTCTAAGGTTGGGAAGATTATTGAAAGGGGTATAGAGCTTTTGCAGGAACAAGGGTTGGTGAATTTCAGAGAAACATGGATGAAGGAAGCTGAAAAGGTTGAGCGTGCTGGGCATGTGGCAGTTTGCCAAGCAATCATTCAAAACAGTGTTGGGGTTGGTGTTGAGGAAGAGGATAGGAAGAGGACTTGGCTTGCTGATGCAGAGGAGTACATGAAGAGTGGTTCCATCGAAACTGCCAGAGCAATTTATGCACATGCACTTACTGTTTTCTTAACCAAGAAGAGTGTATGGCGCAAGGCAGCAATGCTTGAAAAGAGCCATGGGACCAAGGAATCTCTTGATGCTTTGCTTCGTAGAGCAGTGAAGTACCTACCACAGGTTGAATTCTTTTGGCTTATGGCTGCTAAGGAAAACTGGCTTGCCGGGGATGTGAATGCTGCACGAATGATCCTTGAAGAAGCTTCTAAATCCCTTCCCAATTCTGAAGAAATTATGCTTGCTGCATTTAAGTTAGAGTTTGAAAATCATGAGCAAGAGAGAGCTAGAATGATTCTTGACAAAACCCGAGCAAGGGTAGATAGTGGAAGAGTATGGATGAAATCAGCAATTCTTCAGAGAGAATTAGGGAACTCTGATGAGGAGAAGAAGTTTCTTGAGGAAGGGTTGAAGCGCTTCCCCTCATTCTTTAAATTGTGGTTGATGCTTGGACAGCTAGAGGAACGCCTCAATCATTTTCAAAAAGCCAAGGCAGCGTATGAATCGGGTCTCAAGCACTGCTCCAATTGTATACCGCTCTGGCTTTCTCTAGCAAATCTTGAAGAGAATAGAAATGGTCTGAGTAAAGCTCGTGCAGTTCTGACAACAGCCAGGAAGAAGAACTCTCGTAATCCTGAACTGTGGATTGCTGCTGTTCGAGCTGAACTAAGGCATGGTAATAAGAGGGAAGCTGATACCTTGATGGCAAAGGCTTTGCAGGAGCAGGAGTGTCCCAATAGTGGTATCCTGTGGGCAGCATCTATTGGGATGGTACCAGGTCCTCAAAGGAAGACCAAAAGTCTAGATGCCTACAAATATTGTGGTAAGGAAGATCCCCATGTTAATGCTGCTGTGGCCAAGTTATTTTGGCATGAAAGAAAGATAGACAGAGCTAGGGCTAAGCTCAACCTGGCAGTTACACATGCCCCAGATATTGGAGATTTCTGGACTTTATACTACAAGTTTGAACTTCAGAATGGAACTGAGGAGACCCGGAAGGACGTACTGGAAAGGTGTGTTGCTGCACAACCAAAGCATGGTGAAAAATGGCAAACTATTTCAAAGACCGTGGAGAACTGGCACCAACCAACTGAAGCTATCTTGAAGAAAGCTGTGAAGAAAGATGCAGCCAGAGCTCAAAATCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

984

Amino Acids

111.71

Weight (kDa)

8.95

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP1_N PF06424 93 - 230 4e-43 PRP1 splicing factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2575
AccB1I GGYRCC 4 cut(s) 311, 730, 2575, 2883
AccB7I CCANNNNNTGG 2 cut(s) 2738, 2840
AccBSI CCGCTC 3 cut(s) 333, 365, 2341
AccI GTMKAC 2 cut(s) 786, 2335
AccII CGCG 4 cut(s) 309, 467, 491, 1500
AccIII TCCGGA 1 cut(s) 385
AclWI GGATC 6 cut(s) 887, 900, 1293, 1344, 1990, 2630
AcoI YGGCCR 2 cut(s) 304, 2658
AcsI RAATTY 4 cut(s) 1204, 1368, 1609, 1931
AcuI CTGAAG 4 cut(s) 2052, 2144, 2759, 2916
AcyI GRCGYC 2 cut(s) 168, 312
AfaI GTAC 7 cut(s) 473, 799, 943, 1757, 1916, 2577, 2808
AfeI AGCGCT 2 cut(s) 1281, 2219
AfiI CCNNNNNNNGG 8 cut(s) 233, 674, 1924, 2118, 2119, 2543, 2738, 2840
AhdI GACNNNNNGTC 1 cut(s) 2601
AhlI ACTAGT 1 cut(s) 944
AjnI CCWGG 5 cut(s) 755, 1076, 2414, 2578, 2712
AjuI GAANNNNNNNTTGG 4 cut(s) 833, 865, 1668, 1700
AleI CACNNNNGTG 1 cut(s) 887
AloI GAACNNNNNNTCC 2 cut(s) 619, 651
Alw21I GWGCWC 1 cut(s) 2941
Alw26I GTCTC 3 cut(s) 884, 2318, 2786
AlwI GGATC 6 cut(s) 887, 900, 1293, 1344, 1990, 2630
Ama87I CYCGRG 2 cut(s) 532, 2112
Aor13HI TCCGGA 1 cut(s) 385
Aor51HI AGCGCT 2 cut(s) 1281, 2219
AoxI GGCC 6 cut(s) 298, 304, 343, 753, 1383, 2658
ApoI RAATTY 4 cut(s) 1204, 1368, 1609, 1931
Asp700I GAANNNNTTC 2 cut(s) 1302, 2219
Asp718I GGTACC 1 cut(s) 2575
AspLEI GCGC 7 cut(s) 126, 314, 1282, 1500, 1502, 1842, 2220
AspS9I GGNCC 6 cut(s) 197, 344, 1015, 1383, 1872, 2582
AsuC2I CCSGG 3 cut(s) 611, 1972, 2797
AsuHPI GGTGA 6 cut(s) 64, 110, 316, 874, 1618, 2855
AvaI CYCGRG 2 cut(s) 532, 2112
AvaII GGWCC 4 cut(s) 197, 1015, 1872, 2582
AxyI CCTNAGG 1 cut(s) 1011
BalI TGGCCA 1 cut(s) 2660
BamHI GGATCC 1 cut(s) 892
BanI GGYRCC 4 cut(s) 311, 730, 2575, 2883
BanII GRGCYC 1 cut(s) 2941
BauI CACGAG 1 cut(s) 2394
BbsI GAAGAC 3 cut(s) 611, 977, 2600
Bbv12I GWGCWC 1 cut(s) 2941
BccI CCATC 8 cut(s) 119, 520, 565, 1048, 1327, 1781, 2500, 2566
BceAI ACGGC 2 cut(s) 485, 1370
BciT130I CCWGG 5 cut(s) 757, 1078, 2416, 2580, 2714
BciVI GTATCC 2 cut(s) 730, 2558
BcnI CCSGG 3 cut(s) 611, 1972, 2797
BcoDI GTCTC 3 cut(s) 884, 2318, 2786
BcuI ACTAGT 1 cut(s) 944
BfaI CTAG 9 cut(s) 945, 975, 1133, 1476, 2091, 2261, 2354, 2606, 2697
BfmI CTRYAG 1 cut(s) 783
BfoI RGCGCY 4 cut(s) 127, 315, 1283, 2221
BfuI GTATCC 2 cut(s) 730, 2558
BlpI GCTNAGC 1 cut(s) 2703
BmcAI AGTACT 1 cut(s) 943
Bme1390I CCNGG 8 cut(s) 611, 757, 1078, 1972, 2416, 2580, 2714, 2797
Bme18I GGWCC 4 cut(s) 197, 1015, 1872, 2582
BmeRI GACNNNNNGTC 1 cut(s) 2601
BmeT110I CYCGRG 2 cut(s) 532, 2112
BmgT120I GGNCC 6 cut(s) 197, 344, 1015, 1383, 1872, 2582
BmrFI CCNGG 8 cut(s) 611, 757, 1078, 1972, 2416, 2580, 2714, 2797
BmsI GCATC 9 cut(s) 201, 487, 1492, 1735, 1879, 2238, 2570, 2599, 2917
BpiI GAAGAC 3 cut(s) 611, 977, 2600
BplI GAGNNNNNCTC 2 cut(s) 2377, 2409
BpmI CTGGAG 1 cut(s) 782
Bpu10I CCTNAGC 1 cut(s) 1953
Bpu1102I GCTNAGC 1 cut(s) 2703
BpuEI CTTGAG 2 cut(s) 2222, 2300
BpuMI CCSGG 3 cut(s) 611, 1972, 2797
BsaHI GRCGYC 2 cut(s) 168, 312
BsaI GGTCTC 3 cut(s) 884, 2318, 2786
BsaWI WCCGGW 2 cut(s) 385, 727
Bsc4I CCNNNNNNNGG 8 cut(s) 233, 674, 1924, 2118, 2119, 2543, 2738, 2840
Bse118I RCCGGY 2 cut(s) 296, 317
Bse1I ACTGG 4 cut(s) 885, 1967, 2814, 2885
Bse21I CCTNAGG 1 cut(s) 1011
Bse3DI GCAATG 1 cut(s) 1857
BseAI TCCGGA 1 cut(s) 385
BseBI CCWGG 5 cut(s) 757, 1078, 2416, 2580, 2714
BseGI GGATG 7 cut(s) 531, 1129, 1227, 1632, 1981, 2148, 2577
BseLI CCNNNNNNNGG 8 cut(s) 233, 674, 1924, 2118, 2119, 2543, 2738, 2840
BseMI GCAATG 1 cut(s) 1857
BseMII CTCAG 3 cut(s) 257, 2375, 2778
BseNI ACTGG 4 cut(s) 885, 1967, 2814, 2885
BsePI GCGCGC 1 cut(s) 1498
BseRI GAGGAG 9 cut(s) 59, 167, 550, 629, 718, 1064, 1766, 2201, 2804
BseX3I CGGCCG 1 cut(s) 304
BseYI CCCAGC 2 cut(s) 1157, 1655
BsgI GTGCAG 3 cut(s) 1971, 2418, 2811
Bsh1236I CGCG 4 cut(s) 309, 467, 491, 1500
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 6 cut(s) 300, 306, 345, 755, 1385, 2660
BshNI GGYRCC 4 cut(s) 311, 730, 2575, 2883
BsiEI CGRYCG 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 2941
BsiHKCI CYCGRG 2 cut(s) 532, 2112
BsiSI CCGG 8 cut(s) 297, 318, 386, 611, 728, 734, 1971, 2797
BslFI GGGAC 3 cut(s) 844, 1885, 2520
BslI CCNNNNNNNGG 8 cut(s) 233, 674, 1924, 2118, 2119, 2543, 2738, 2840
BsmAI GTCTC 3 cut(s) 884, 2318, 2786
BsmFI GGGAC 3 cut(s) 844, 1885, 2520
BsmI GAATGC 1 cut(s) 1987
BsnI GGCC 6 cut(s) 300, 306, 345, 755, 1385, 2660
Bso31I GGTCTC 3 cut(s) 884, 2318, 2786
BsoBI CYCGRG 2 cut(s) 532, 2112
Bsp1286I GDGCHC 1 cut(s) 2941
Bsp13I TCCGGA 1 cut(s) 385
Bsp143I GATC 6 cut(s) 892, 1083, 1285, 1336, 1995, 2635
Bsp1720I GCTNAGC 1 cut(s) 2703
Bsp19I CCATGG 1 cut(s) 1867
BspANI GGCC 6 cut(s) 300, 306, 345, 755, 1385, 2660
BspCNI CTCAG 3 cut(s) 256, 2376, 2779
BspEI TCCGGA 1 cut(s) 385
BspFNI CGCG 4 cut(s) 309, 467, 491, 1500
BspHI TCATGA 1 cut(s) 2074
BspPI GGATC 6 cut(s) 887, 900, 1293, 1344, 1990, 2630
BspT107I GGYRCC 4 cut(s) 311, 730, 2575, 2883
BspTNI GGTCTC 3 cut(s) 884, 2318, 2786
BsrBI CCGCTC 3 cut(s) 333, 365, 2341
BsrDI GCAATG 1 cut(s) 1857
BsrFI RCCGGY 2 cut(s) 296, 317
BsrI ACTGG 4 cut(s) 885, 1967, 2814, 2885
BssAI RCCGGY 2 cut(s) 296, 317
BssHII GCGCGC 1 cut(s) 1498
BssMI GATC 6 cut(s) 892, 1083, 1285, 1336, 1995, 2635
BssNAI GTATAC 1 cut(s) 2336
BssNI GRCGYC 2 cut(s) 168, 312
BssSI CACGAG 1 cut(s) 2394
BssT1I CCWWGG 4 cut(s) 1167, 1867, 1875, 2292
Bst1107I GTATAC 1 cut(s) 2336
Bst2BI CACGAG 1 cut(s) 2394
Bst2UI CCWGG 5 cut(s) 757, 1078, 2416, 2580, 2714
Bst4CI ACNGT 7 cut(s) 835, 981, 1694, 1813, 2445, 2872, 2952
Bst6I CTCTTC 8 cut(s) 617, 695, 1710, 1721, 1757, 1823, 2128, 2361
BstACI GRCGYC 2 cut(s) 168, 312
BstAPI GCANNNNNTGC 1 cut(s) 1796
BstC8I GCNNGC 9 cut(s) 298, 352, 1141, 1145, 1500, 1653, 1740, 1968, 2046
BstDSI CCRYGG 4 cut(s) 307, 1386, 1867, 2871
BstENI CCTNNNNNAGG 1 cut(s) 1922
BstF5I GGATG 7 cut(s) 531, 1129, 1227, 1632, 1981, 2148, 2577
BstFNI CGCG 4 cut(s) 309, 467, 491, 1500
BstH2I RGCGCY 4 cut(s) 127, 315, 1283, 2221
BstHHI GCGC 7 cut(s) 126, 314, 1282, 1500, 1502, 1842, 2220
BstKTI GATC 6 cut(s) 895, 1086, 1288, 1339, 1998, 2638
BstMAI GTCTC 3 cut(s) 884, 2318, 2786
BstMBI GATC 6 cut(s) 892, 1083, 1285, 1336, 1995, 2635
BstMCI CGRYCG 1 cut(s) 307
BstNI CCWGG 5 cut(s) 757, 1078, 2416, 2580, 2714
BstNSI RCATGY 5 cut(s) 776, 1143, 1664, 1805, 2729
BstSCI CCNGG 8 cut(s) 609, 755, 1076, 1970, 2414, 2578, 2712, 2795
BstSFI CTRYAG 1 cut(s) 783
BstUI CGCG 4 cut(s) 309, 467, 491, 1500
BstV2I GAAGAC 3 cut(s) 611, 977, 2600
BstX2I RGATCY 3 cut(s) 892, 1336, 2635
BstYI RGATCY 3 cut(s) 892, 1336, 2635
BstZ17I GTATAC 1 cut(s) 2336
BstZI CGGCCG 1 cut(s) 304
Bsu36I CCTNAGG 1 cut(s) 1011
BsuI GTATCC 2 cut(s) 730, 2558
BsuRI GGCC 6 cut(s) 300, 306, 345, 755, 1385, 2660
BtgI CCRYGG 4 cut(s) 307, 1386, 1867, 2871
BtsCI GGATG 7 cut(s) 531, 1129, 1227, 1632, 1981, 2148, 2577
BtsI GCAGTG 3 cut(s) 1335, 1914, 2320
BtsIMutI CAGTG 6 cut(s) 840, 892, 1335, 1699, 1914, 2320
Cac8I GCNNGC 9 cut(s) 298, 352, 1141, 1145, 1500, 1653, 1740, 1968, 2046
CciI TCATGA 1 cut(s) 2074
CfoI GCGC 7 cut(s) 126, 314, 1282, 1500, 1502, 1842, 2220
Cfr10I RCCGGY 2 cut(s) 296, 317
Cfr13I GGNCC 6 cut(s) 197, 344, 1015, 1383, 1872, 2582
Cfr42I CCGCGG 1 cut(s) 310
CseI GACGC 4 cut(s) 176, 473, 497, 768
CsiI ACCWGGT 1 cut(s) 2578
Csp6I GTAC 7 cut(s) 472, 798, 942, 1756, 1915, 2576, 2807
CspCI CAANNNNNGTGG 4 cut(s) 2605, 2640, 2853, 2888
CviQI GTAC 7 cut(s) 472, 798, 942, 1756, 1915, 2576, 2807
DinI GGCGCC 1 cut(s) 313
DpnI GATC 6 cut(s) 894, 1085, 1287, 1338, 1997, 2637
DpnII GATC 6 cut(s) 892, 1083, 1285, 1336, 1995, 2635
DraI TTTAAA 1 cut(s) 2236
DriI GACNNNNNGTC 1 cut(s) 2601
EaeI YGGCCR 2 cut(s) 304, 2658
EagI CGGCCG 1 cut(s) 304
Eam1104I CTCTTC 8 cut(s) 617, 695, 1710, 1721, 1757, 1823, 2128, 2361
Eam1105I GACNNNNNGTC 1 cut(s) 2601
EarI CTCTTC 8 cut(s) 617, 695, 1710, 1721, 1757, 1823, 2128, 2361
Ecl136II GAGCTC 1 cut(s) 2939
EclXI CGGCCG 1 cut(s) 304
Eco130I CCWWGG 4 cut(s) 1167, 1867, 1875, 2292
Eco24I GRGCYC 1 cut(s) 2941
Eco31I GGTCTC 3 cut(s) 884, 2318, 2786
Eco47I GGWCC 4 cut(s) 197, 1015, 1872, 2582
Eco47III AGCGCT 2 cut(s) 1281, 2219
Eco52I CGGCCG 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 2939
Eco57I CTGAAG 4 cut(s) 2052, 2144, 2759, 2916
Eco81I CCTNAGG 1 cut(s) 1011
Eco88I CYCGRG 2 cut(s) 532, 2112
EcoICRI GAGCTC 1 cut(s) 2939
EcoNI CCTNNNNNAGG 1 cut(s) 1922
EcoO109I RGGNCCY 2 cut(s) 1015, 2582
EcoRI GAATTC 2 cut(s) 1204, 1931
EcoRII CCWGG 5 cut(s) 755, 1076, 2414, 2578, 2712
EcoT14I CCWWGG 4 cut(s) 1167, 1867, 1875, 2292
EcoT38I GRGCYC 1 cut(s) 2941
EgeI GGCGCC 1 cut(s) 313
EheI GGCGCC 1 cut(s) 313
ErhI CCWWGG 4 cut(s) 1167, 1867, 1875, 2292
FaqI GGGAC 3 cut(s) 844, 1885, 2520
FauI CCCGC 5 cut(s) 288, 338, 355, 359, 370
FauNDI CATATG 1 cut(s) 1104
FblI GTMKAC 2 cut(s) 786, 2335
FokI GGATG 7 cut(s) 538, 1136, 1234, 1639, 1988, 2155, 2584
FriOI GRGCYC 1 cut(s) 2941
FspBI CTAG 9 cut(s) 945, 975, 1133, 1476, 2091, 2261, 2354, 2606, 2697
GlaI GCGC 7 cut(s) 125, 313, 1281, 1499, 1501, 1841, 2219
GsaI CCCAGC 2 cut(s) 1161, 1659
GsuI CTGGAG 1 cut(s) 782
HaeII RGCGCY 4 cut(s) 127, 315, 1283, 2221
HaeIII GGCC 6 cut(s) 300, 306, 345, 755, 1385, 2660
HapII CCGG 8 cut(s) 297, 318, 386, 611, 728, 734, 1971, 2797
HgaI GACGC 4 cut(s) 176, 473, 497, 768
HhaI GCGC 7 cut(s) 126, 314, 1282, 1500, 1502, 1842, 2220
Hin1I GRCGYC 2 cut(s) 168, 312
Hin6I GCGC 7 cut(s) 124, 312, 1280, 1498, 1500, 1840, 2218
HinP1I GCGC 7 cut(s) 124, 312, 1280, 1498, 1500, 1840, 2218
HindIII AAGCTT 1 cut(s) 2007
HinfI GANTC 8 cut(s) 530, 595, 866, 1001, 1462, 1880, 2098, 2306
HpaII CCGG 8 cut(s) 297, 318, 386, 611, 728, 734, 1971, 2797
HphI GGTGA 6 cut(s) 64, 110, 316, 874, 1618, 2855
Hpy166II GTNNAC 4 cut(s) 505, 787, 1213, 2336
Hpy8I GTNNAC 4 cut(s) 505, 787, 1213, 2336
Hpy99I CGWCG 9 cut(s) 170, 296, 395, 413, 431, 467, 479, 488, 491
HpyCH4III ACNGT 7 cut(s) 835, 981, 1694, 1813, 2445, 2872, 2952
HpyCH4IV ACGT 2 cut(s) 291, 2805
HpySE526I ACGT 2 cut(s) 291, 2805
Hsp92I GRCGYC 2 cut(s) 168, 312
HspAI GCGC 7 cut(s) 124, 312, 1280, 1498, 1500, 1840, 2218
KasI GGCGCC 1 cut(s) 311
Kpn2I TCCGGA 1 cut(s) 385
KpnI GGTACC 1 cut(s) 2579
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
KspI CCGCGG 1 cut(s) 310
Kzo9I GATC 6 cut(s) 892, 1083, 1285, 1336, 1995, 2635
LmnI GCTCC 5 cut(s) 338, 370, 1240, 2330, 2524
LweI GCATC 9 cut(s) 201, 487, 1492, 1735, 1879, 2238, 2570, 2599, 2917
MabI ACCWGGT 1 cut(s) 2578
MaeI CTAG 9 cut(s) 945, 975, 1133, 1476, 2091, 2261, 2354, 2606, 2697
MaeII ACGT 2 cut(s) 291, 2805
MaeIII GTNAC 3 cut(s) 404, 1343, 2719
MalI GATC 6 cut(s) 894, 1085, 1287, 1338, 1997, 2637
MbiI CCGCTC 3 cut(s) 333, 365, 2341
MboI GATC 6 cut(s) 892, 1083, 1285, 1336, 1995, 2635
MfeI CAATTG 2 cut(s) 369, 2329
MflI RGATCY 3 cut(s) 892, 1336, 2635
MhlI GDGCHC 1 cut(s) 2941
MlsI TGGCCA 1 cut(s) 2660
MluNI TGGCCA 1 cut(s) 2660
Mly113I GGCGCC 1 cut(s) 312
MlyI GAGTC 2 cut(s) 524, 1010
MmeI TCCRAC 8 cut(s) 115, 207, 360, 1007, 1026, 1383, 1416, 1506
Mox20I TGGCCA 1 cut(s) 2660
MroI TCCGGA 1 cut(s) 385
MroNI GCCGGC 1 cut(s) 296
MroXI GAANNNNTTC 2 cut(s) 1302, 2219
MscI TGGCCA 1 cut(s) 2660
MseI TTAA 7 cut(s) 77, 1089, 1467, 1820, 2055, 2235, 2646
MslI CAYNNNNRTG 3 cut(s) 887, 1350, 2646
Msp20I TGGCCA 1 cut(s) 2660
MspA1I CMGCKG 2 cut(s) 309, 512
MspI CCGG 8 cut(s) 297, 318, 386, 611, 728, 734, 1971, 2797
MspR9I CCNGG 8 cut(s) 611, 757, 1078, 1972, 2416, 2580, 2714, 2797
MunI CAATTG 2 cut(s) 369, 2329
Mva1269I GAATGC 1 cut(s) 1987
MvaI CCWGG 5 cut(s) 757, 1078, 2416, 2580, 2714
MvnI CGCG 4 cut(s) 309, 467, 491, 1500
NaeI GCCGGC 1 cut(s) 298
NarI GGCGCC 1 cut(s) 312
NciI CCSGG 3 cut(s) 611, 1972, 2797
NcoI CCATGG 1 cut(s) 1867
NdeI CATATG 1 cut(s) 1104
NdeII GATC 6 cut(s) 892, 1083, 1285, 1336, 1995, 2635
NgoMIV GCCGGC 1 cut(s) 296
NmeAIII GCCGAG 3 cut(s) 168, 213, 282
NmuCI GTSAC 1 cut(s) 1343
NspI RCATGY 5 cut(s) 776, 1143, 1664, 1805, 2729
OliI CACNNNNGTG 1 cut(s) 887
PaeI GCATGC 1 cut(s) 1143
PaeR7I CTCGAG 1 cut(s) 532
PagI TCATGA 1 cut(s) 2074
PauI GCGCGC 1 cut(s) 1498
PcsI WCGNNNNNNNCGW 3 cut(s) 471, 480, 483
PctI GAATGC 1 cut(s) 1987
PdiI GCCGGC 1 cut(s) 298
PdmI GAANNNNTTC 2 cut(s) 1302, 2219
PfeI GAWTC 6 cut(s) 595, 866, 1462, 1880, 2098, 2306
PflMI CCANNNNNTGG 2 cut(s) 2738, 2840
PleI GAGTC 2 cut(s) 524, 1009
PluTI GGCGCC 1 cut(s) 315
PpsI GAGTC 2 cut(s) 524, 1009
PpuMI RGGWCCY 2 cut(s) 1015, 2582
Psp124BI GAGCTC 1 cut(s) 2941
Psp5II RGGWCCY 2 cut(s) 1015, 2582
Psp6I CCWGG 5 cut(s) 755, 1076, 2414, 2578, 2712
PspFI CCCAGC 2 cut(s) 1157, 1655
PspGI CCWGG 5 cut(s) 755, 1076, 2414, 2578, 2712
PspPI GGNCC 6 cut(s) 197, 344, 1015, 1383, 1872, 2582
PspPPI RGGWCCY 2 cut(s) 1015, 2582
PspXI VCTCGAGB 1 cut(s) 532
PsuI RGATCY 3 cut(s) 892, 1336, 2635
PteI GCGCGC 1 cut(s) 1498
RsaI GTAC 7 cut(s) 473, 799, 943, 1757, 1916, 2577, 2808
RsaNI GTAC 7 cut(s) 472, 798, 942, 1756, 1915, 2576, 2807
RseI CAYNNNNRTG 3 cut(s) 887, 1350, 2646
SacI GAGCTC 1 cut(s) 2941
SacII CCGCGG 1 cut(s) 310
SaqAI TTAA 7 cut(s) 77, 1089, 1467, 1820, 2055, 2235, 2646
Sau3AI GATC 6 cut(s) 892, 1083, 1285, 1336, 1995, 2635
Sau96I GGNCC 6 cut(s) 197, 344, 1015, 1383, 1872, 2582
ScaI AGTACT 1 cut(s) 943
SchI GAGTC 2 cut(s) 524, 1010
ScrFI CCNGG 8 cut(s) 611, 757, 1078, 1972, 2416, 2580, 2714, 2797
SduI GDGCHC 1 cut(s) 2941
SexAI ACCWGGT 1 cut(s) 2578
SfaNI GCATC 9 cut(s) 201, 487, 1492, 1735, 1879, 2238, 2570, 2599, 2917
SfcI CTRYAG 1 cut(s) 783
SfoI GGCGCC 1 cut(s) 313
Sfr274I CTCGAG 1 cut(s) 532
Sfr303I CCGCGG 1 cut(s) 310
SgrBI CCGCGG 1 cut(s) 310
SinI GGWCC 4 cut(s) 197, 1015, 1872, 2582
SlaI CTCGAG 1 cut(s) 532
SmiMI CAYNNNNRTG 3 cut(s) 887, 1350, 2646
SmlI CTYRAG 3 cut(s) 532, 2201, 2315
SmoI CTYRAG 3 cut(s) 532, 2201, 2315
SpeI ACTAGT 1 cut(s) 944
SphI GCATGC 1 cut(s) 1143
SspDI GGCGCC 1 cut(s) 311
SspI AATATT 1 cut(s) 2621
SspMI CTAG 9 cut(s) 945, 975, 1133, 1476, 2091, 2261, 2354, 2606, 2697
SstI GAGCTC 1 cut(s) 2941
StyD4I CCNGG 8 cut(s) 609, 755, 1076, 1970, 2414, 2578, 2712, 2795
StyI CCWWGG 4 cut(s) 1167, 1867, 1875, 2292
TaaI ACNGT 7 cut(s) 835, 981, 1694, 1813, 2445, 2872, 2952
TaiI ACGT 2 cut(s) 294, 2808
TaqI TCGA 9 cut(s) 426, 533, 584, 714, 747, 1004, 1253, 1776, 2461
TatI WGTACW 3 cut(s) 797, 941, 1755
TauI GCSGC 6 cut(s) 173, 240, 309, 312, 494, 1037
TfiI GAWTC 6 cut(s) 595, 866, 1462, 1880, 2098, 2306
Tru1I TTAA 7 cut(s) 77, 1089, 1467, 1820, 2055, 2235, 2646
Tru9I TTAA 7 cut(s) 77, 1089, 1467, 1820, 2055, 2235, 2646
TscAI CASTG 6 cut(s) 840, 892, 1335, 1699, 1914, 2327
TseFI GTSAC 1 cut(s) 1343
Tsp45I GTSAC 1 cut(s) 1343
TspGWI ACGGA 3 cut(s) 628, 634, 1389
TspRI CASTG 6 cut(s) 840, 892, 1335, 1699, 1914, 2327
Van91I CCANNNNNTGG 2 cut(s) 2738, 2840
VpaK11BI GGWCC 4 cut(s) 197, 1015, 1872, 2582
XagI CCTNNNNNAGG 1 cut(s) 1922
XapI RAATTY 4 cut(s) 1204, 1368, 1609, 1931
XbaI TCTAGA 1 cut(s) 2605
XceI RCATGY 5 cut(s) 776, 1143, 1664, 1805, 2729
XhoI CTCGAG 1 cut(s) 532
XmiI GTMKAC 2 cut(s) 786, 2335
XmnI GAANNNNTTC 2 cut(s) 1302, 2219
XspI CTAG 9 cut(s) 945, 975, 1133, 1476, 2091, 2261, 2354, 2606, 2697
ZrmI AGTACT 1 cut(s) 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.