Rmu_sc0003080.1_g000021

PRP1 splicing factor, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003080.1
OG0000856
Physical Location & Seq
Forward (+)
110720 .. 111226
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003080.1_g000021.1.cds

Sequence Viewer

Length: 423 bp
atgcagactaatccaaagcatccacctagttggattacggctgcgaggttggaggaagtggcggggaagattcaggcaacaaggcaattgatccagaaagggtgtgaggaatgtcccaagagggagggtgtgtggttggaggcatgtaggcttgccagtcctgctagagccaaggctgtgattgctgctggagctaagtcgatacccaattcagtcaagctgtcgatgctgtggaaggcggtggtggagctggcaaatgaggaggatgccagacttttgcttcaaagggttgtggagtgttgtccttttcacattgagttgtggcttgcactagcgagattggaaacttatgaaaatgccaggaaggtccttaacaaggcccgcgagaagctttcgaaggagcctgccatttggttactgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

140

Amino Acids

15.75

Weight (kDa)

9.22

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 384
AciI CCGC 3 cut(s) 62, 239, 382
AclWI GGATC 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 376
AgsI TTSAA 1 cut(s) 284
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 4 cut(s) 194, 220, 250, 391
AluI AGCT 4 cut(s) 194, 220, 250, 391
AlwI GGATC 1 cut(s) 85
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 2 cut(s) 41, 185
AspS9I GGNCC 2 cut(s) 367, 379
AsuII TTCGAA 1 cut(s) 395
AvaII GGWCC 1 cut(s) 367
BbvI GCAGC 2 cut(s) 28, 172
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 361
BfaI CTAG 3 cut(s) 27, 165, 332
BfmI CTRYAG 1 cut(s) 419
BisI GCNGC 2 cut(s) 42, 186
BlsI GCNGC 2 cut(s) 43, 187
Bme1390I CCNGG 1 cut(s) 361
Bme18I GGWCC 1 cut(s) 367
BmgT120I GGNCC 2 cut(s) 367, 379
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 3 cut(s) 28, 216, 256
BpmI CTGGAG 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 395
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse1I ACTGG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 19, 271
BseLI CCNNNNNNNGG 1 cut(s) 376
BseNI ACTGG 1 cut(s) 156
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 28, 172
Bsh1236I CGCG 1 cut(s) 384
BshFI GGCC 1 cut(s) 380
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 99
BsnI GGCC 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 395
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 3 cut(s) 62, 239, 382
BspANI GGCC 1 cut(s) 380
BspFNI CGCG 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 395
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 420
BstBI TTCGAA 1 cut(s) 395
BstC8I GCNNGC 5 cut(s) 153, 252, 327, 382, 405
BstDEI CTNAG 1 cut(s) 195
BstENI CCTNNNNNAGG 1 cut(s) 374
BstF5I GGATG 2 cut(s) 19, 271
BstFNI CGCG 1 cut(s) 384
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 4 cut(s) 161, 182, 191, 226
BstNI CCWGG 1 cut(s) 361
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 359
BstSFI CTRYAG 1 cut(s) 419
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 2 cut(s) 28, 172
BstXI CCANNNNNNTGG 1 cut(s) 30
BsuRI GGCC 1 cut(s) 380
BtsCI GGATG 2 cut(s) 19, 271
Cac8I GCNNGC 5 cut(s) 153, 252, 327, 382, 405
Cfr13I GGNCC 2 cut(s) 367, 379
CviAII CATG 1 cut(s) 144
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 367
EcoNI CCTNNNNNAGG 1 cut(s) 374
EcoO109I RGGNCCY 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 1 cut(s) 147
FaiI YATR 2 cut(s) 145, 351
FaqI GGGAC 1 cut(s) 99
FatI CATG 1 cut(s) 143
FauI CCCGC 2 cut(s) 55, 389
Fnu4HI GCNGC 2 cut(s) 42, 186
FokI GGATG 2 cut(s) 6, 278
Fsp4HI GCNGC 2 cut(s) 42, 186
FspBI CTAG 3 cut(s) 27, 165, 332
GluI GCNGC 2 cut(s) 42, 186
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 1 cut(s) 380
Hin1II CATG 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 94
HpyAV CCTTC 3 cut(s) 229, 358, 391
HpyCH4III ACNGT 1 cut(s) 420
HpyCH4V TGCA 2 cut(s) 4, 329
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 182, 191, 226
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 1 cut(s) 147
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 3 cut(s) 191, 247, 400
Lsp1109I GCAGC 2 cut(s) 28, 172
LweI GCATC 3 cut(s) 28, 216, 256
MaeI CTAG 3 cut(s) 27, 165, 332
MaeIII GTNAC 1 cut(s) 414
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 1 cut(s) 79
MfeI CAATTG 1 cut(s) 86
MluCI AATT 2 cut(s) 86, 208
MmeI TCCRAC 3 cut(s) 11, 30, 117
MnlI CCTC 8 cut(s) 39, 46, 100, 114, 118, 133, 253, 256
MseI TTAA 1 cut(s) 372
MspR9I CCNGG 1 cut(s) 361
MunI CAATTG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 361
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 4 cut(s) 161, 182, 191, 226
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 147
NlaIV GGNNCC 1 cut(s) 402
NspI RCATGY 1 cut(s) 147
NspV TTCGAA 1 cut(s) 395
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 2 cut(s) 43, 187
PpuMI RGGWCCY 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 2 cut(s) 367, 379
PspPPI RGGWCCY 1 cut(s) 367
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 2 cut(s) 42, 186
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 2 cut(s) 367, 379
ScrFI CCNGG 1 cut(s) 361
SetI ASST 7 cut(s) 28, 50, 196, 222, 252, 369, 393
SfaNI GCATC 3 cut(s) 28, 216, 256
SfcI CTRYAG 1 cut(s) 419
SfuI TTCGAA 1 cut(s) 395
SinI GGWCC 1 cut(s) 367
Sse9I AATT 2 cut(s) 86, 208
SsiI CCGC 3 cut(s) 62, 239, 382
SspMI CTAG 3 cut(s) 27, 165, 332
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 420
TaqI TCGA 3 cut(s) 200, 224, 395
TasI AATT 2 cut(s) 86, 208
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseI GCWGC 2 cut(s) 41, 185
TspDTI ATGAA 1 cut(s) 366
VpaK11BI GGWCC 1 cut(s) 367
XagI CCTNNNNNAGG 1 cut(s) 374
XceI RCATGY 1 cut(s) 147
XspI CTAG 3 cut(s) 27, 165, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.