Rh7CG407700

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000856
Physical Location & Seq
Reverse (-)
52367123 .. 52372995
5873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG407700.1

Sequence Viewer

Length: 2961 bp
ATGGTTTTCATCGCAACCCCAAACCACAAAACCCTAACCGTAAATCTAAACCCCAAGACCACCACCCTCCTCACCTTAAAGCACCAAATCCAACAAACCTCCCTCATGCCCATCTCTCACCAGCGCCTATTCCTCTCCCAAAGCCTCCACTTATCCACCCAAAACGACGCCGCACTCCTCTCCGACCTCGGCATCGGACCCCTCTCCACCCTAACCCTCCACACCCCCTTCCTCGGCGGCACTCAGCCCCACCGCTACTCCTTCCTCACAGCCAACCCCCCGCCCAACTACGTCGCCGGCCTCGGCCGCGGCGCCACCGGCTTCACAACCCGCTCCGACATCGGCCCCGCCCGCCCCACTCCCCCTCCAATTGGAGCTGTTCGGGAAAATCCTGACGACGAGGACAAGGGTTACGACGAGAACCAGAAGTTCGACGAGTTTGAAGGAAACGACATGGGGCTTTTCGCCGACGCGGAGTACGACGAGGACGACGACGCGGCTGATGCCGTTTACGCGGCGGTTGATGAGAGGATGGACTCGAGGAGGAAGGAGAGGAGAGAGGCTAAGAAGAAGGAGATGGAGGAAAAGTCGAACGCTGAGAATCCGAAGAAGACCCCGGAGGAGTTGAACAGGAAGCTGCGTTCCGTGTCCGTCAAGGAATGGGAGAGCTTACCAGAAATGGGGGATTATTCGTGGAAGAACAGGAAGAGGAGGAAGTTCGAAAGCTTTGTTCCGGTGCCGGATACCCTTTTCGAGAAGGCCAGGCTGGAGAGGCAGCATGTTGCGTCTGTAGACCCAATGAGTACAGATTTGACTGCATTGGGCGAGGGAAAGGGGACAGTGATGAAGCTGAAATTGGATAGGCTTTCAGATTCGGTTTCGGGTCTCACCAGTGTGGATCCAAAGGGGTATCTTAGTGGTCTTTTGAGTATGAATATGAATGTTAGTACTAGTTCTGATGTTTCGGATATAAAGAAGACTAGACAGTTGTATAGGAGTGTAAGAGAGTCGAAGCCTAAGGACCCGTGTGGTTGGATTGCGGCTGCGAGGTTGGAGGAGATGGTGGGGAAGTTGAAGGAAGCCAGGGAGATCATTAAGAAAGGCTGTCATATGTGTCCGAAGAATGAGGATGTGTGGTTAGAGGCATGCAGGCTTGTCAGCCCCAGCGAAGCCAAGGTTGTTGTTGCTATGGGAGTGAAGCAGATACCGAATTCGGTGGACTTGTGGATGAGGGCTGTGGATTTGGAGCATGATAAGTCGAATAAGAAGAAAGTGTTGTGGAAAGCGTTGGATCAAAGTAATGAAAATCTTCGTTGTGTTAGGCTGTGGAAGGCAGTGATGGATCTCTGTCACGAAGATGACAAGGATATGAAAGTTTTGCTTCATAGGGCCGTGGAGGTTTGTCCGTTGGAGGTTCAATTTTGGGTTGCTCTTGCGAGGTCGGAAAGTTATGAGGCTGCCAAGATGATTCTTAATAATGCTAGAGTGCATCTTCCGAAAGAGCGCGCCATTTGGGTTGAAGCAGCCAAGTTGGAAGAAGTTAGGGGGAATGTGTCTAAGGTTGGGAAGATTATTGAAAGGGGTATAGAGCTTTTGCAGGAACAAGGGTTGGTGAATTTCAGAGAAACATGGATGAAGGAAGCTGAAAAGGTTGAGCGTGCTGGGCATGTGGCAGTTTGCCAAGCAATCATTCAAAACAGTGTTGGGGTTGGTGTTGAGGAAGAGGATAGGAAGAGGACTTGGCTTGCTGATGCAGAGGAGTACATGAAGAGTGGTTCCATCGAAACTGCCAGAGCAATTTATGCACATGCACTTACTGTTTTCTTAACCAAGAAGAGTGTATGGCGCAAGGCAGCAATGCTTGAAAAGAGCCATGGGACCAAGGAATCTCTTGATGCTTTGCTTCGTAGAGCAGTGAAGTACCTACCACAGGTTGAATTCTTTTGGCTTATGGCTGCTAAGGAAAACTGGCTTGCCAGGGATGTGAATGCTGCACGAATGATCCTTGAAGAAGCTTCTAAATCCCTTCCCAATTCTGAAGAAATTATGCTTGCTGCATTTAAGTTAGAGTTTGAAAATCATGAGCAAGAGAGAGCTAGAATGATTCTTGACAAAACCCGAGCAAGGGTAGACAGTGGAAGAGTATGGATGAAATCAGCAATTCTTCAGAGAGAATTAGGGAACTCTGATGAGGAGAAGAAGTTTCTTGAGGAAGGGTTGAAGCGCTTCCCCTCATTCTTTAAATTGTGGTTGATGCTTGGACAGCTAGAGGAACGCCTCAATCATTTTCAAAAAGCCAAGGCCGCGTATGAATCGGGTCTCAAGCACTGCTCCAATTGTATACCGCTCTGGCTTTCTCTAGCAAATCTTGAAGAGAAGAGAAATGGTCTGAGTAAAGCTCGTGCAGTTCTGACAACAGCCAGGAAGAAGAACTCTCGTAATCCTGAACTGTGGCTTGCTGCTGTTCGAGCTGAACTAAGGCATGGTAATAAGAGGGAAGCTGATACTTTGATGGCAAAGGCTTTACGGGAGCAGGAGTGTCCCAATAGTGGTATGTTGTGGGCAGCATCTATTGGGATGGTACCCGGTCCTCAAAGGAAGACCAAAAGTCTAGATGCCTACAAATATTGTGGTAAGGAAGATCCCCATGTCAATGCTGCTGTGGCCAAGTTATTTTGGCATGAAAGAAAGATAGACAGAGCTAGGGCTAAGCTCAACCTGGCAGTTACACATGCCCCAGATATTGGAGATTTCTGGACTTTATACTACAAGTTTGAACTTCAGAATGGAACTGAGGAGACCCGGAAGGACGTACTGGAAAGGTGTGTTGCTGCACAACCAAAGCATGGTGAAAAATGGCAAACTATTTCAAAGACCGTGGAGAACTGGCACCAACCAACTGAAGCTATCTTGAAGAAAGCTGTGAAGGAAGATGTAGCCAGAGCTCAAAATCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

986

Amino Acids

112.05

Weight (kDa)

8.83

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP1_N PF06424 93 - 232 3.8e-43 PRP1 splicing factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2581
AccB1I GGYRCC 4 cut(s) 311, 736, 2581, 2889
AccB7I CCANNNNNTGG 2 cut(s) 2744, 2846
AccBSI CCGCTC 2 cut(s) 333, 2347
AccI GTMKAC 3 cut(s) 792, 2130, 2341
AccII CGCG 6 cut(s) 309, 473, 497, 515, 1506, 2306
AclWI GGATC 6 cut(s) 893, 906, 1299, 1350, 1996, 2636
AcoI YGGCCR 2 cut(s) 304, 2664
AcsI RAATTY 3 cut(s) 1210, 1615, 1937
AcuI CTGAAG 4 cut(s) 2058, 2150, 2765, 2922
AcyI GRCGYC 2 cut(s) 168, 312
AfaI GTAC 7 cut(s) 479, 805, 949, 1763, 1922, 2583, 2814
AfeI AGCGCT 1 cut(s) 2225
AfiI CCNNNNNNNGG 9 cut(s) 233, 371, 680, 1930, 2124, 2125, 2549, 2744, 2846
AhdI GACNNNNNGTC 1 cut(s) 2607
AhlI ACTAGT 1 cut(s) 950
AjnI CCWGG 5 cut(s) 761, 1082, 1976, 2420, 2718
AjuI GAANNNNNNNTTGG 4 cut(s) 839, 871, 1674, 1706
AleI CACNNNNGTG 1 cut(s) 893
AloI GAACNNNNNNTCC 2 cut(s) 625, 657
Alw21I GWGCWC 1 cut(s) 2947
Alw26I GTCTC 3 cut(s) 890, 2324, 2792
AlwI GGATC 6 cut(s) 893, 906, 1299, 1350, 1996, 2636
Ama87I CYCGRG 2 cut(s) 538, 2118
Aor51HI AGCGCT 1 cut(s) 2225
AoxI GGCC 7 cut(s) 298, 304, 343, 759, 1389, 2301, 2664
ApoI RAATTY 3 cut(s) 1210, 1615, 1937
Asp700I GAANNNNTTC 2 cut(s) 1308, 2225
Asp718I GGTACC 1 cut(s) 2581
AspLEI GCGC 6 cut(s) 126, 314, 1506, 1508, 1848, 2226
AspS9I GGNCC 6 cut(s) 197, 344, 1021, 1389, 1878, 2588
AsuC2I CCSGG 3 cut(s) 617, 2586, 2803
AsuHPI GGTGA 5 cut(s) 64, 110, 880, 1624, 2861
AsuII TTCGAA 1 cut(s) 720
AvaI CYCGRG 2 cut(s) 538, 2118
AvaII GGWCC 4 cut(s) 197, 1021, 1878, 2588
AxyI CCTNAGG 1 cut(s) 1017
BalI TGGCCA 1 cut(s) 2666
BamHI GGATCC 1 cut(s) 898
BanI GGYRCC 4 cut(s) 311, 736, 2581, 2889
BanII GRGCYC 1 cut(s) 2947
BauI CACGAG 1 cut(s) 2400
BbsI GAAGAC 3 cut(s) 617, 983, 2606
Bbv12I GWGCWC 1 cut(s) 2947
BccI CCATC 8 cut(s) 119, 526, 571, 1054, 1333, 1787, 2506, 2572
BceAI ACGGC 2 cut(s) 491, 1376
BciT130I CCWGG 5 cut(s) 763, 1084, 1978, 2422, 2720
BciVI GTATCC 1 cut(s) 736
BcnI CCSGG 3 cut(s) 617, 2586, 2803
BcoDI GTCTC 3 cut(s) 890, 2324, 2792
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 8 cut(s) 951, 981, 1482, 2097, 2267, 2360, 2612, 2703
BfmI CTRYAG 1 cut(s) 789
BfoI RGCGCY 3 cut(s) 127, 315, 2227
BfuI GTATCC 1 cut(s) 736
BlpI GCTNAGC 1 cut(s) 2709
BmcAI AGTACT 1 cut(s) 949
Bme1390I CCNGG 8 cut(s) 617, 763, 1084, 1978, 2422, 2586, 2720, 2803
Bme18I GGWCC 4 cut(s) 197, 1021, 1878, 2588
BmeRI GACNNNNNGTC 1 cut(s) 2607
BmeT110I CYCGRG 2 cut(s) 538, 2118
BmgT120I GGNCC 6 cut(s) 197, 344, 1021, 1389, 1878, 2588
BmrFI CCNGG 8 cut(s) 617, 763, 1084, 1978, 2422, 2586, 2720, 2803
BmsI GCATC 8 cut(s) 201, 493, 1498, 1741, 1885, 2244, 2576, 2605
BpiI GAAGAC 3 cut(s) 617, 983, 2606
BplI GAGNNNNNCTC 2 cut(s) 2383, 2415
BpmI CTGGAG 1 cut(s) 788
Bpu10I CCTNAGC 1 cut(s) 1959
Bpu1102I GCTNAGC 1 cut(s) 2709
Bpu14I TTCGAA 1 cut(s) 720
BpuEI CTTGAG 2 cut(s) 2228, 2306
BpuMI CCSGG 3 cut(s) 617, 2586, 2803
BsaHI GRCGYC 2 cut(s) 168, 312
BsaI GGTCTC 3 cut(s) 890, 2324, 2792
BsaWI WCCGGW 1 cut(s) 733
Bsc4I CCNNNNNNNGG 9 cut(s) 233, 371, 680, 1930, 2124, 2125, 2549, 2744, 2846
Bse118I RCCGGY 2 cut(s) 296, 317
Bse1I ACTGG 4 cut(s) 891, 1973, 2820, 2891
Bse21I CCTNAGG 1 cut(s) 1017
Bse3DI GCAATG 1 cut(s) 1863
BseBI CCWGG 5 cut(s) 763, 1084, 1978, 2422, 2720
BseGI GGATG 7 cut(s) 537, 1135, 1233, 1638, 1987, 2154, 2583
BseLI CCNNNNNNNGG 9 cut(s) 233, 371, 680, 1930, 2124, 2125, 2549, 2744, 2846
BseMI GCAATG 1 cut(s) 1863
BseMII CTCAG 4 cut(s) 257, 588, 2381, 2784
BseNI ACTGG 4 cut(s) 891, 1973, 2820, 2891
BsePI GCGCGC 1 cut(s) 1504
BseX3I CGGCCG 1 cut(s) 304
BseYI CCCAGC 2 cut(s) 1163, 1661
BsgI GTGCAG 3 cut(s) 1977, 2424, 2817
Bsh1236I CGCG 6 cut(s) 309, 473, 497, 515, 1506, 2306
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 7 cut(s) 300, 306, 345, 761, 1391, 2303, 2666
BshNI GGYRCC 4 cut(s) 311, 736, 2581, 2889
BsiEI CGRYCG 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 2947
BsiHKCI CYCGRG 2 cut(s) 538, 2118
BsiSI CCGG 7 cut(s) 297, 318, 617, 734, 740, 2586, 2803
BslFI GGGAC 3 cut(s) 850, 1891, 2526
BslI CCNNNNNNNGG 9 cut(s) 233, 371, 680, 1930, 2124, 2125, 2549, 2744, 2846
BsmAI GTCTC 3 cut(s) 890, 2324, 2792
BsmFI GGGAC 3 cut(s) 850, 1891, 2526
BsmI GAATGC 1 cut(s) 1993
BsnI GGCC 7 cut(s) 300, 306, 345, 761, 1391, 2303, 2666
Bso31I GGTCTC 3 cut(s) 890, 2324, 2792
BsoBI CYCGRG 2 cut(s) 538, 2118
Bsp119I TTCGAA 1 cut(s) 720
Bsp1286I GDGCHC 1 cut(s) 2947
Bsp143I GATC 6 cut(s) 898, 1089, 1291, 1342, 2001, 2641
Bsp1720I GCTNAGC 1 cut(s) 2709
Bsp19I CCATGG 1 cut(s) 1873
BspANI GGCC 7 cut(s) 300, 306, 345, 761, 1391, 2303, 2666
BspCNI CTCAG 4 cut(s) 256, 589, 2382, 2785
BspFNI CGCG 6 cut(s) 309, 473, 497, 515, 1506, 2306
BspHI TCATGA 1 cut(s) 2080
BspPI GGATC 6 cut(s) 893, 906, 1299, 1350, 1996, 2636
BspT104I TTCGAA 1 cut(s) 720
BspT107I GGYRCC 4 cut(s) 311, 736, 2581, 2889
BspTNI GGTCTC 3 cut(s) 890, 2324, 2792
BsrBI CCGCTC 2 cut(s) 333, 2347
BsrDI GCAATG 1 cut(s) 1863
BsrFI RCCGGY 2 cut(s) 296, 317
BsrI ACTGG 4 cut(s) 891, 1973, 2820, 2891
BssAI RCCGGY 2 cut(s) 296, 317
BssHII GCGCGC 1 cut(s) 1504
BssMI GATC 6 cut(s) 898, 1089, 1291, 1342, 2001, 2641
BssNAI GTATAC 1 cut(s) 2342
BssNI GRCGYC 2 cut(s) 168, 312
BssSI CACGAG 1 cut(s) 2400
BssT1I CCWWGG 4 cut(s) 1173, 1873, 1881, 2298
Bst1107I GTATAC 1 cut(s) 2342
Bst2BI CACGAG 1 cut(s) 2400
Bst2UI CCWGG 5 cut(s) 763, 1084, 1978, 2422, 2720
Bst4CI ACNGT 9 cut(s) 40, 841, 987, 1700, 1819, 2135, 2451, 2878, 2958
Bst6I CTCTTC 8 cut(s) 701, 1716, 1727, 1763, 1829, 2134, 2367, 2372
BstACI GRCGYC 2 cut(s) 168, 312
BstAPI GCANNNNNTGC 1 cut(s) 1802
BstBI TTCGAA 1 cut(s) 720
BstDSI CCRYGG 4 cut(s) 307, 1392, 1873, 2877
BstENI CCTNNNNNAGG 1 cut(s) 1928
BstF5I GGATG 7 cut(s) 537, 1135, 1233, 1638, 1987, 2154, 2583
BstFNI CGCG 6 cut(s) 309, 473, 497, 515, 1506, 2306
BstH2I RGCGCY 3 cut(s) 127, 315, 2227
BstHHI GCGC 6 cut(s) 126, 314, 1506, 1508, 1848, 2226
BstKTI GATC 6 cut(s) 901, 1092, 1294, 1345, 2004, 2644
BstMAI GTCTC 3 cut(s) 890, 2324, 2792
BstMBI GATC 6 cut(s) 898, 1089, 1291, 1342, 2001, 2641
BstMCI CGRYCG 1 cut(s) 307
BstNI CCWGG 5 cut(s) 763, 1084, 1978, 2422, 2720
BstNSI RCATGY 5 cut(s) 782, 1149, 1670, 1811, 2735
BstSCI CCNGG 8 cut(s) 615, 761, 1082, 1976, 2420, 2584, 2718, 2801
BstSFI CTRYAG 1 cut(s) 789
BstUI CGCG 6 cut(s) 309, 473, 497, 515, 1506, 2306
BstV2I GAAGAC 3 cut(s) 617, 983, 2606
BstX2I RGATCY 3 cut(s) 898, 1342, 2641
BstYI RGATCY 3 cut(s) 898, 1342, 2641
BstZ17I GTATAC 1 cut(s) 2342
BstZI CGGCCG 1 cut(s) 304
Bsu36I CCTNAGG 1 cut(s) 1017
BsuI GTATCC 1 cut(s) 736
BsuRI GGCC 7 cut(s) 300, 306, 345, 761, 1391, 2303, 2666
BtgI CCRYGG 4 cut(s) 307, 1392, 1873, 2877
BtsCI GGATG 7 cut(s) 537, 1135, 1233, 1638, 1987, 2154, 2583
BtsI GCAGTG 3 cut(s) 1341, 1920, 2326
BtsIMutI CAGTG 7 cut(s) 846, 898, 1341, 1705, 1920, 2140, 2326
CciI TCATGA 1 cut(s) 2080
CfoI GCGC 6 cut(s) 126, 314, 1506, 1508, 1848, 2226
Cfr10I RCCGGY 2 cut(s) 296, 317
Cfr13I GGNCC 6 cut(s) 197, 344, 1021, 1389, 1878, 2588
Cfr42I CCGCGG 1 cut(s) 310
CseI GACGC 4 cut(s) 176, 479, 503, 774
Csp6I GTAC 7 cut(s) 478, 804, 948, 1762, 1921, 2582, 2813
CspCI CAANNNNNGTGG 4 cut(s) 2611, 2646, 2859, 2894
CviQI GTAC 7 cut(s) 478, 804, 948, 1762, 1921, 2582, 2813
DinI GGCGCC 1 cut(s) 313
DpnI GATC 6 cut(s) 900, 1091, 1293, 1344, 2003, 2643
DpnII GATC 6 cut(s) 898, 1089, 1291, 1342, 2001, 2641
DraI TTTAAA 1 cut(s) 2242
DriI GACNNNNNGTC 1 cut(s) 2607
EaeI YGGCCR 2 cut(s) 304, 2664
EagI CGGCCG 1 cut(s) 304
Eam1104I CTCTTC 8 cut(s) 701, 1716, 1727, 1763, 1829, 2134, 2367, 2372
Eam1105I GACNNNNNGTC 1 cut(s) 2607
EarI CTCTTC 8 cut(s) 701, 1716, 1727, 1763, 1829, 2134, 2367, 2372
Ecl136II GAGCTC 1 cut(s) 2945
EclXI CGGCCG 1 cut(s) 304
Eco130I CCWWGG 4 cut(s) 1173, 1873, 1881, 2298
Eco24I GRGCYC 1 cut(s) 2947
Eco31I GGTCTC 3 cut(s) 890, 2324, 2792
Eco47I GGWCC 4 cut(s) 197, 1021, 1878, 2588
Eco47III AGCGCT 1 cut(s) 2225
Eco52I CGGCCG 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 2945
Eco57I CTGAAG 4 cut(s) 2058, 2150, 2765, 2922
Eco81I CCTNAGG 1 cut(s) 1017
Eco88I CYCGRG 2 cut(s) 538, 2118
EcoICRI GAGCTC 1 cut(s) 2945
EcoNI CCTNNNNNAGG 1 cut(s) 1928
EcoO109I RGGNCCY 1 cut(s) 1021
EcoRI GAATTC 2 cut(s) 1210, 1937
EcoRII CCWGG 5 cut(s) 761, 1082, 1976, 2420, 2718
EcoT14I CCWWGG 4 cut(s) 1173, 1873, 1881, 2298
EcoT38I GRGCYC 1 cut(s) 2947
EgeI GGCGCC 1 cut(s) 313
EheI GGCGCC 1 cut(s) 313
ErhI CCWWGG 4 cut(s) 1173, 1873, 1881, 2298
FalI AAGNNNNNCTT 2 cut(s) 1365, 1397
FaqI GGGAC 3 cut(s) 850, 1891, 2526
FauI CCCGC 4 cut(s) 288, 338, 355, 359
FauNDI CATATG 1 cut(s) 1110
FblI GTMKAC 3 cut(s) 792, 2130, 2341
FokI GGATG 7 cut(s) 544, 1142, 1240, 1645, 1994, 2161, 2590
FriOI GRGCYC 1 cut(s) 2947
FspBI CTAG 8 cut(s) 951, 981, 1482, 2097, 2267, 2360, 2612, 2703
GlaI GCGC 6 cut(s) 125, 313, 1505, 1507, 1847, 2225
GsaI CCCAGC 2 cut(s) 1167, 1665
GsuI CTGGAG 1 cut(s) 788
HaeII RGCGCY 3 cut(s) 127, 315, 2227
HaeIII GGCC 7 cut(s) 300, 306, 345, 761, 1391, 2303, 2666
HapII CCGG 7 cut(s) 297, 318, 617, 734, 740, 2586, 2803
HgaI GACGC 4 cut(s) 176, 479, 503, 774
HhaI GCGC 6 cut(s) 126, 314, 1506, 1508, 1848, 2226
Hin1I GRCGYC 2 cut(s) 168, 312
Hin6I GCGC 6 cut(s) 124, 312, 1504, 1506, 1846, 2224
HinP1I GCGC 6 cut(s) 124, 312, 1504, 1506, 1846, 2224
HindIII AAGCTT 2 cut(s) 724, 2013
HinfI GANTC 8 cut(s) 536, 601, 872, 1007, 1468, 1886, 2104, 2312
HpaII CCGG 7 cut(s) 297, 318, 617, 734, 740, 2586, 2803
HphI GGTGA 5 cut(s) 64, 110, 880, 1624, 2861
Hpy166II GTNNAC 5 cut(s) 511, 793, 1219, 2131, 2342
Hpy8I GTNNAC 5 cut(s) 511, 793, 1219, 2131, 2342
Hpy99I CGWCG 9 cut(s) 170, 296, 401, 419, 437, 473, 485, 494, 497
HpyCH4III ACNGT 9 cut(s) 40, 841, 987, 1700, 1819, 2135, 2451, 2878, 2958
HpyCH4IV ACGT 2 cut(s) 291, 2811
HpySE526I ACGT 2 cut(s) 291, 2811
Hsp92I GRCGYC 2 cut(s) 168, 312
HspAI GCGC 6 cut(s) 124, 312, 1504, 1506, 1846, 2224
KasI GGCGCC 1 cut(s) 311
KpnI GGTACC 1 cut(s) 2585
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
KspI CCGCGG 1 cut(s) 310
Kzo9I GATC 6 cut(s) 898, 1089, 1291, 1342, 2001, 2641
LmnI GCTCC 5 cut(s) 338, 374, 1246, 2336, 2530
LweI GCATC 8 cut(s) 201, 493, 1498, 1741, 1885, 2244, 2576, 2605
MaeI CTAG 8 cut(s) 951, 981, 1482, 2097, 2267, 2360, 2612, 2703
MaeII ACGT 2 cut(s) 291, 2811
MaeIII GTNAC 3 cut(s) 410, 1349, 2725
MalI GATC 6 cut(s) 900, 1091, 1293, 1344, 2003, 2643
MbiI CCGCTC 2 cut(s) 333, 2347
MboI GATC 6 cut(s) 898, 1089, 1291, 1342, 2001, 2641
MfeI CAATTG 2 cut(s) 369, 2335
MflI RGATCY 3 cut(s) 898, 1342, 2641
MhlI GDGCHC 1 cut(s) 2947
MlsI TGGCCA 1 cut(s) 2666
MluNI TGGCCA 1 cut(s) 2666
Mly113I GGCGCC 1 cut(s) 312
MlyI GAGTC 2 cut(s) 530, 1016
MmeI TCCRAC 9 cut(s) 115, 207, 360, 1013, 1032, 1269, 1389, 1422, 1512
Mox20I TGGCCA 1 cut(s) 2666
MroNI GCCGGC 1 cut(s) 296
MroXI GAANNNNTTC 2 cut(s) 1308, 2225
MscI TGGCCA 1 cut(s) 2666
MseI TTAA 6 cut(s) 77, 1095, 1473, 1826, 2061, 2241
MslI CAYNNNNRTG 3 cut(s) 893, 1356, 2652
Msp20I TGGCCA 1 cut(s) 2666
MspA1I CMGCKG 1 cut(s) 309
MspI CCGG 7 cut(s) 297, 318, 617, 734, 740, 2586, 2803
MspR9I CCNGG 8 cut(s) 617, 763, 1084, 1978, 2422, 2586, 2720, 2803
MunI CAATTG 2 cut(s) 369, 2335
Mva1269I GAATGC 1 cut(s) 1993
MvaI CCWGG 5 cut(s) 763, 1084, 1978, 2422, 2720
MvnI CGCG 6 cut(s) 309, 473, 497, 515, 1506, 2306
NaeI GCCGGC 1 cut(s) 298
NarI GGCGCC 1 cut(s) 312
NciI CCSGG 3 cut(s) 617, 2586, 2803
NcoI CCATGG 1 cut(s) 1873
NdeI CATATG 1 cut(s) 1110
NdeII GATC 6 cut(s) 898, 1089, 1291, 1342, 2001, 2641
NgoMIV GCCGGC 1 cut(s) 296
NmeAIII GCCGAG 3 cut(s) 168, 213, 282
NmuCI GTSAC 1 cut(s) 1349
NspI RCATGY 5 cut(s) 782, 1149, 1670, 1811, 2735
NspV TTCGAA 1 cut(s) 720
OliI CACNNNNGTG 1 cut(s) 893
PaeI GCATGC 1 cut(s) 1149
PaeR7I CTCGAG 1 cut(s) 538
PagI TCATGA 1 cut(s) 2080
PauI GCGCGC 1 cut(s) 1504
PcsI WCGNNNNNNNCGW 3 cut(s) 477, 486, 489
PctI GAATGC 1 cut(s) 1993
PdiI GCCGGC 1 cut(s) 298
PdmI GAANNNNTTC 2 cut(s) 1308, 2225
PfeI GAWTC 6 cut(s) 601, 872, 1468, 1886, 2104, 2312
PflMI CCANNNNNTGG 2 cut(s) 2744, 2846
PleI GAGTC 2 cut(s) 530, 1015
PluTI GGCGCC 1 cut(s) 315
PpsI GAGTC 2 cut(s) 530, 1015
PpuMI RGGWCCY 1 cut(s) 1021
Psp124BI GAGCTC 1 cut(s) 2947
Psp5II RGGWCCY 1 cut(s) 1021
Psp6I CCWGG 5 cut(s) 761, 1082, 1976, 2420, 2718
PspFI CCCAGC 2 cut(s) 1163, 1661
PspGI CCWGG 5 cut(s) 761, 1082, 1976, 2420, 2718
PspPI GGNCC 6 cut(s) 197, 344, 1021, 1389, 1878, 2588
PspPPI RGGWCCY 1 cut(s) 1021
PspXI VCTCGAGB 1 cut(s) 538
PsuI RGATCY 3 cut(s) 898, 1342, 2641
PteI GCGCGC 1 cut(s) 1504
RsaI GTAC 7 cut(s) 479, 805, 949, 1763, 1922, 2583, 2814
RsaNI GTAC 7 cut(s) 478, 804, 948, 1762, 1921, 2582, 2813
RseI CAYNNNNRTG 3 cut(s) 893, 1356, 2652
SacI GAGCTC 1 cut(s) 2947
SacII CCGCGG 1 cut(s) 310
SaqAI TTAA 6 cut(s) 77, 1095, 1473, 1826, 2061, 2241
Sau3AI GATC 6 cut(s) 898, 1089, 1291, 1342, 2001, 2641
Sau96I GGNCC 6 cut(s) 197, 344, 1021, 1389, 1878, 2588
ScaI AGTACT 1 cut(s) 949
SchI GAGTC 2 cut(s) 530, 1016
ScrFI CCNGG 8 cut(s) 617, 763, 1084, 1978, 2422, 2586, 2720, 2803
SduI GDGCHC 1 cut(s) 2947
SfaNI GCATC 8 cut(s) 201, 493, 1498, 1741, 1885, 2244, 2576, 2605
SfcI CTRYAG 1 cut(s) 789
SfoI GGCGCC 1 cut(s) 313
Sfr274I CTCGAG 1 cut(s) 538
Sfr303I CCGCGG 1 cut(s) 310
SfuI TTCGAA 1 cut(s) 720
SgrBI CCGCGG 1 cut(s) 310
SinI GGWCC 4 cut(s) 197, 1021, 1878, 2588
SlaI CTCGAG 1 cut(s) 538
SmiMI CAYNNNNRTG 3 cut(s) 893, 1356, 2652
SmlI CTYRAG 3 cut(s) 538, 2207, 2321
SmoI CTYRAG 3 cut(s) 538, 2207, 2321
SpeI ACTAGT 1 cut(s) 950
SphI GCATGC 1 cut(s) 1149
SspDI GGCGCC 1 cut(s) 311
SspI AATATT 1 cut(s) 2627
SspMI CTAG 8 cut(s) 951, 981, 1482, 2097, 2267, 2360, 2612, 2703
SstI GAGCTC 1 cut(s) 2947
StyD4I CCNGG 8 cut(s) 615, 761, 1082, 1976, 2420, 2584, 2718, 2801
StyI CCWWGG 4 cut(s) 1173, 1873, 1881, 2298
TaaI ACNGT 9 cut(s) 40, 841, 987, 1700, 1819, 2135, 2451, 2878, 2958
TaiI ACGT 2 cut(s) 294, 2814
TaqI TCGA 9 cut(s) 432, 539, 590, 720, 753, 1010, 1259, 1782, 2467
TatI WGTACW 3 cut(s) 803, 947, 1761
TauI GCSGC 8 cut(s) 173, 240, 309, 312, 500, 518, 1043, 2306
TfiI GAWTC 6 cut(s) 601, 872, 1468, 1886, 2104, 2312
Tru1I TTAA 6 cut(s) 77, 1095, 1473, 1826, 2061, 2241
Tru9I TTAA 6 cut(s) 77, 1095, 1473, 1826, 2061, 2241
TscAI CASTG 7 cut(s) 846, 898, 1341, 1705, 1920, 2140, 2333
TseFI GTSAC 1 cut(s) 1349
Tsp45I GTSAC 1 cut(s) 1349
TspGWI ACGGA 3 cut(s) 634, 640, 1395
TspRI CASTG 7 cut(s) 846, 898, 1341, 1705, 1920, 2140, 2333
Van91I CCANNNNNTGG 2 cut(s) 2744, 2846
VpaK11BI GGWCC 4 cut(s) 197, 1021, 1878, 2588
XagI CCTNNNNNAGG 1 cut(s) 1928
XapI RAATTY 3 cut(s) 1210, 1615, 1937
XbaI TCTAGA 1 cut(s) 2611
XceI RCATGY 5 cut(s) 782, 1149, 1670, 1811, 2735
XhoI CTCGAG 1 cut(s) 538
XmiI GTMKAC 3 cut(s) 792, 2130, 2341
XmnI GAANNNNTTC 2 cut(s) 1308, 2225
XspI CTAG 8 cut(s) 951, 981, 1482, 2097, 2267, 2360, 2612, 2703
ZrmI AGTACT 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.