MD09G1251900.v1.1

pre-mRNA-processing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000856
Physical Location & Seq
Forward (+)
32296331 .. 32302198
5868 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1251900.v1.1.491

Sequence Viewer

Length: 3699 bp
ATGGTGTTCATCACATCCCCCAATCACAAAACCCTAACCCTAAATCTAAACCCTAAGACCACCACCCTCCAAGCCCTAAAGCTCCAAATCGAGCAAAATTCCCACATACCCATTCCTCTGCAGCGCCTATTCATCTCGCAAAGCCTCCAATTACTCACCCAATCCGACTCCGCCCTCCTCTCCGACCTCGGAATCCTACCCCTCTCAACCCTAACTCTTCACATCCCCTTATTCGGCGGCACCCAACCTCCCGCCGTCCCTAAACCCCGCCTCGAGTTCCTCAACTCCAAGCCTCCCCCGAATTATGTCGCAGGGCTCGGCCGTGGTGCCACTGGCTTCACCACCAGGTCTGATATCGGGCCCGCACGTGCCGCGCCCGACCTGCCTGATAGGTCGGCCACCACAATCGGAGGCGCTACTGCTCCTGCTGCGCCGCCTGGGGTCGGCCGAGGGCGCGGGAAGCCCGACGAAGAGGAGGAGGATGAAGGGGAGGATAAAGGGTACGATGAGAATCAGAAGTTTGATGAATTCGAAGGGAATGATGTTGGGTTGTTTGCATCGGCGGAATACGATGATGAGGACAAGGAGGCTGATGCGGTGTGGGAAGCCATTGAGCAAAGAATGGACTCTCGGAGGAAGGACAGGAGAGAAGCACGGTTGAAAGAAGAGATTGAAAAGTACAGAGCTTCGAACCCAAAGATCACGGAGCAGTTTGCCACTCTGAAGAGGAAGTTGTACACTGTGTCTGCTCAGGAATGGGAGAGCATACCGGAAATTGGAGACTATTCGTCGAGGAACAAGAAGAAGAGATTCGAGAGCTTTGTACCGGTGCCCGATACACTTTTAGAGAAAGCAAGACAGGAAAAGGAGCATGTTACGGCATTGGACCCCAAGAGTAGGGGAGCTGGTGGTACGGAGACTCCGTGGTCTCAAACTCCGGTTACGGATTTGACTGCTGTAGGTGAGGGTAGAGGTACTGTTTTGTCATTGAAATTAGATAGGCTTTCTGATTCTGTTTCTGGATTGACGGTTGTGGACCCGAAAGGGTACCTTACTGATCTTAAGAGCATGAAGATTACTAGTGATGCAGAGATTTCAGATATTAAAAAGGCTAGGTTGTTGCTTAAGAGTGTTATACAGACGAATCCAAAGCACCCACCTGGTTGGATTGCGGCTGCAAGGCTGGAGGAGGTGGCTGGGAAGATTCAGGCAGCTAGACAATTGATTCAGAAAGGGTGTGAAGAATGTCCTAAGAGTGAGGATGTGTGGTTAGAGGCGTGTAGGCTTTCAAGCCCTGATGAAGCTAAGTCTGTGATTTCTAAGGGTGTGAAGTCGATTCCCAATTCGGTGAAGTTGTGGATGCAGGCTGCGAAATTGGAGCGTGATGATTTGAATAGGAGCAGGGTATTGAGGAAAGGTTTGGAACACATTCCCGATTCTGTTAGGCTATGGAAGGCAGTGGTGGAGCTTGCCAATGAGGAGGATGCAAGACTTTTGCTTCATAGGGCTGTGGAGTGTTGTCCCTTGCACATTGAGTTATGGCTTGCACTTGCAAGATTAGAAACTTATGATAATGCGAGGAAGGTCCTTAATAGGGCGAGAGAGAAGTTATCAAAAGAGCCTGCCATTTGGATCACAGCAGCGAAGTTGGAGGAAGCTAATGGGAACACGGCCATGGTTGGGAAGATTATTGAAAGGGGTATAAGGGCTTTGCAAAGAGAAGGGTTGGCGATTGATAGAGAGGCATGGATGAAGGAGGCTGAAGCTGCTGAGCGTGCAGGATCTGTTGCAACTTGCCAAGCAATCATTCGGAACACAATTGGGATTGGTGTGGAGGAAGAGGATAGGAAGAGGACATGGGTTGCTGATGCTGAGGAATGCAAGAAAAGGGGTTCCATTGAAACAGCCAGAGCTATTTATGCACACGCACTTACTGTCTTTTTAACCAAGAAGAGCATATGGCTCAAAGCCGCACAGCTTGAAAAGAGCCATGGGACTAGGGAATCTCTTGATGCTTTACTTCGTAAAGCGGTGACATACCGACCACAGGCTGAAGTCTTGTGGCTTATGGGTGCTAAGGAGAAGTGGCTTGCTGGGGATGTGCCCGCTGCTCGTGCCATCCTTCAAGAAGCTTATGCTGCCATTCCCAATTCTGAAGAAATTTGGCTTGCTGCATTTAAACTTGAATTTGAGAACCATGAACCAGAGAGAGCTAGAATGCTTCTTGCCAAAGCCCGAGAAAAGGGAGGCACTGAAAGAGTGTGGATGAAATCAGCAATTGTTGAGAGAGAATTAGGGAACATTAATGCAGAGAGGAAGTTGCTTGATGATGGGTTGAAGCGCTTCCCTTCCTTTTATAAATTATGGTTGATGCTTGGACAGCTAGAGGAACGCCTTGGTCATTTGGAGAAAGCCAAGGAGGCCTATGATTCGGGTCTGAAGTACTGCTCCAGTTCTATTCCACTGTGGCTTTCTCTTGCTAATCTTGAAGAGAAGATGACTGGTCTGAGTAAAGCTCGTGCAATTCTGACGATGGCCAGGAAGAAGAATCCTCAGAACCCTGAATTGTGGCTTGCTGCTGTTCGAGCTGAATTAAGGCATGGAAATAAGAAGGAAGCTGATATCTTGATGGCAAAGGCCTTGCAGGAGTGTCCCAATAGTGGTATATTGTGGGCTGCGTCCATTGAGATGGTACCCCGTCCACAACGGAAGACGAAGAGTATGGATGCCCTCAAGAAATGTGATCATGATCCCCATGTCATTGCTGCTGTGTCTAAGTTATTTTGGCATGACAGGAAGGTTGACAAAGCTAGGACTTGGCTTAACAGGGCAGTGACACTAGCGCCAGATATTGGGGATTTCTGGGCTTTATACTACAAATTTGAACTTCAACATGGGACCGATGAGAACCAGAAAGATGTACTTAAAAGGTGCATAGCTGCAGAACCAAAGCATGGTGAGAAATGGCAACCTATTTCAAAGGCCGTGGAGAACTCCCACCAACCAACTGAAGCCATCTTGAAGAAAGTGGTGGTTGCTCTTGGGAAGGAAGAGAGTGCAGCTGAAAATAATAAACAGTATTTACAGATTCTGTTTCTGGGTTGGCGGTTGAGGAACAAGAAGACATTCAAGAGCTTTCTGCTGGTGGCCGCTGCGCTTTCAAACAAGGCAAGACAGGAACTGGAGTCGAAAGGGTACCTTACTGATCTTAAGAATATGAATACTACTAGTGATGCTGAGATTTCAGATAATGAAAATGCGAGGTTGCTGGCACAGACGAATCCGACGCACCCACGTGGTTGGATTGCTGCTGCCAGGCTGGAGGTGGTGGCTGGGAACATTCAGGCGTGTAGGCTTGCGAGCCCTGATGAAACAAAGGCCTTGATTTCGAAGGGAGTGAAATTGATTCCCAATTCGGACAAACTGTGGAGGCAGGCTGCGGAATTGGAGCATGATGATTTGAGTAGGAGCAGGGTGTTGAGGAAAGGTTTGGAACACATTCCCGATTCTGTTAGGCTGTGGGAGGCTGTCGTGGAGCTTGCCGGTGAGGAAGATAAGAGACTTTTGCTTCATAGGGCTATGAAGTGTTGTCCCTTGCACGTTGAGTTGTGGCTTCAACATGGTGCATTGGAAACTAATGAGAATATGTGGATGTCTTTACCAAGGCAAGAGAGAAGGTATTGTGTTGTCTATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000244 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031047 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032259 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034622 GO:0034641 GO:0035257 GO:0035258 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046540 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051252 GO:0051254 GO:0051427 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065003 GO:0065007 GO:0070013 GO:0070920 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090351 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1903798 GO:1903800 GO:1990904 GO:2000112 GO:2000628 GO:2000630 GO:2000634 GO:2000636 GO:2000637 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
PRP1_N TPR_14 TPR_16 TPR_19 TPR_8 ubiquitin

Protein Analysis

1233

Amino Acids

138.32

Weight (kDa)

8.71

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP1_N PF06424 98 - 265 8.9e-53 PRP1 splicing factor, N-terminal
Suf PF05843 421 - 574 1.5e-06 Suppressor of forked protein (Suf)
HAT_PRP39_N PF23240 761 - 831 2.9e-06 PRP39 N-terminal HAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2358
AasI GACNNNNNNGTC 1 cut(s) 925
Acc36I ACCTGC 1 cut(s) 390
Acc65I GGTACC 3 cut(s) 1047, 2692, 3195
AccB1I GGYRCC 6 cut(s) 239, 326, 829, 1047, 2692, 3195
AccB7I CCANNNNNTGG 2 cut(s) 2852, 2954
AccII CGCG 2 cut(s) 374, 456
AclWI GGATC 3 cut(s) 1640, 1789, 2744
AcoI YGGCCR 6 cut(s) 319, 396, 445, 1671, 2535, 3147
AcsI RAATTY 5 cut(s) 97, 527, 2160, 2186, 2879
AcuI CTGAAG 6 cut(s) 743, 1782, 2073, 2175, 2459, 3030
AcvI CACGTG 2 cut(s) 368, 3296
AfeI AGCGCT 1 cut(s) 2342
AflII CTTAAG 3 cut(s) 1061, 1124, 3209
AgeI ACCGGT 1 cut(s) 826
AhdI GACNNNNNGTC 1 cut(s) 787
AhlI ACTAGT 2 cut(s) 1079, 3227
AjnI CCWGG 5 cut(s) 344, 436, 1159, 2537, 3314
AjuI GAANNNNNNNTTGG 2 cut(s) 1791, 1823
AleI CACNNNNGTG 1 cut(s) 3294
Alw26I GTCTC 4 cut(s) 774, 911, 933, 3553
AlwI GGATC 3 cut(s) 1640, 1789, 2744
AlwNI CAGNNNCTG 3 cut(s) 1784, 3091, 3181
Ama87I CYCGRG 2 cut(s) 272, 2235
Aor51HI AGCGCT 1 cut(s) 2342
ApaI GGGCCC 1 cut(s) 363
ApoI RAATTY 5 cut(s) 97, 527, 2160, 2186, 2879
AseI ATTAAT 1 cut(s) 2304
AsiGI ACCGGT 1 cut(s) 826
Asp700I GAANNNNTTC 5 cut(s) 809, 1428, 2342, 3125, 3498
Asp718I GGTACC 3 cut(s) 1047, 2692, 3195
AspLEI GCGC 8 cut(s) 126, 376, 416, 433, 456, 2343, 2845, 3157
AspS9I GGNCC 6 cut(s) 359, 360, 886, 1036, 1585, 2898
AsuHPI GGTGA 7 cut(s) 148, 331, 974, 1360, 2044, 2969, 3557
AsuII TTCGAA 3 cut(s) 531, 689, 3389
AvaI CYCGRG 2 cut(s) 272, 2235
AvaII GGWCC 4 cut(s) 886, 1036, 1585, 2898
BaeGI GKGCMC 3 cut(s) 363, 834, 2106
BalI TGGCCA 1 cut(s) 2537
BanI GGYRCC 6 cut(s) 239, 326, 829, 1047, 2692, 3195
BanII GRGCYC 3 cut(s) 318, 363, 3365
BauI CACGAG 2 cut(s) 2112, 2517
BbrPI CACGTG 2 cut(s) 368, 3296
BbsI GAAGAC 2 cut(s) 2717, 3128
BbvCI CCTCAGC 1 cut(s) 1872
BccI CCATC 6 cut(s) 2126, 2324, 2527, 2623, 2683, 3023
BceAI ACGGC 5 cut(s) 239, 306, 894, 1686, 2969
BciT130I CCWGG 5 cut(s) 346, 438, 1161, 2539, 3316
BclI TGATCA 1 cut(s) 2743
BcoDI GTCTC 4 cut(s) 774, 911, 933, 3553
BcuI ACTAGT 2 cut(s) 1079, 3227
BfaI CTAG 9 cut(s) 1080, 1113, 1215, 1998, 2214, 2384, 2811, 2840, 3228
BfmI CTRYAG 3 cut(s) 119, 957, 2940
BfoI RGCGCY 4 cut(s) 127, 417, 2344, 2846
BfrI CTTAAG 3 cut(s) 1061, 1124, 3209
BfuAI ACCTGC 1 cut(s) 390
BglI GCCNNNNNGGC 1 cut(s) 2420
BlpI GCTNAGC 1 cut(s) 1770
BmcAI AGTACT 1 cut(s) 2444
Bme1390I CCNGG 5 cut(s) 346, 438, 1161, 2539, 3316
Bme18I GGWCC 4 cut(s) 886, 1036, 1585, 2898
BmeRI GACNNNNNGTC 1 cut(s) 787
BmeT110I CYCGRG 2 cut(s) 272, 2235
BmgT120I GGNCC 6 cut(s) 359, 360, 886, 1036, 1585, 2898
BmrFI CCNGG 5 cut(s) 346, 438, 1161, 2539, 3316
BpiI GAAGAC 2 cut(s) 2717, 3128
BplI GAGNNNNNCTC 2 cut(s) 2500, 2532
BpmI CTGGAG 4 cut(s) 1205, 2434, 3203, 3341
Bpu10I CCTNAGC 3 cut(s) 750, 1872, 2076
Bpu1102I GCTNAGC 1 cut(s) 1770
Bpu14I TTCGAA 3 cut(s) 531, 689, 3389
BpuEI CTTGAG 1 cut(s) 2717
BsaAI YACGTR 2 cut(s) 368, 3296
BsaBI GATNNNNATC 2 cut(s) 510, 2748
BsaI GGTCTC 1 cut(s) 933
BsaWI WCCGGW 3 cut(s) 769, 826, 937
BsaXI ACNNNNNCTCC 6 cut(s) 232, 262, 904, 908, 934, 938
Bse118I RCCGGY 2 cut(s) 826, 3542
Bse1I ACTGG 4 cut(s) 337, 2451, 2506, 3186
Bse3DI GCAATG 1 cut(s) 2760
Bse8I GATNNNNATC 2 cut(s) 510, 2748
BseBI CCWGG 5 cut(s) 346, 438, 1161, 2539, 3316
BseJI GATNNNNATC 2 cut(s) 510, 2748
BseMI GCAATG 1 cut(s) 2760
BseMII CTCAG 6 cut(s) 764, 1761, 1863, 2498, 2567, 3228
BseNI ACTGG 4 cut(s) 337, 2451, 2506, 3186
BseRI GAGGAG 5 cut(s) 167, 488, 491, 1202, 1493
BseSI GKGCMC 3 cut(s) 363, 834, 2106
BseX3I CGGCCG 2 cut(s) 319, 445
BseYI CCCAGC 3 cut(s) 1196, 2093, 3332
BsgI GTGCAG 2 cut(s) 1797, 3078
Bsh1236I CGCG 2 cut(s) 374, 456
Bsh1285I CGRYCG 2 cut(s) 322, 448
BshNI GGYRCC 6 cut(s) 239, 326, 829, 1047, 2692, 3195
BshTI ACCGGT 1 cut(s) 826
BsiEI CGRYCG 2 cut(s) 322, 448
BsiHKCI CYCGRG 2 cut(s) 272, 2235
BsiSI CCGG 4 cut(s) 770, 827, 938, 3543
BslFI GGGAC 6 cut(s) 242, 1506, 2008, 2637, 2911, 3576
BsmAI GTCTC 4 cut(s) 774, 911, 933, 3553
BsmFI GGGAC 6 cut(s) 242, 1506, 2008, 2637, 2911, 3576
BsmI GAATGC 2 cut(s) 1883, 2223
Bso31I GGTCTC 1 cut(s) 933
BsoBI CYCGRG 2 cut(s) 272, 2235
Bsp119I TTCGAA 3 cut(s) 531, 689, 3389
Bsp120I GGGCCC 1 cut(s) 359
Bsp1286I GDGCHC 5 cut(s) 318, 363, 834, 2106, 3365
Bsp1407I TGTACA 1 cut(s) 735
Bsp143I GATC 7 cut(s) 699, 1057, 1632, 1781, 2743, 2749, 3205
Bsp1720I GCTNAGC 1 cut(s) 1770
Bsp19I CCATGG 2 cut(s) 1674, 1990
BspCNI CTCAG 6 cut(s) 763, 1762, 1864, 2499, 2566, 3229
BspFNI CGCG 2 cut(s) 374, 456
BspHI TCATGA 1 cut(s) 2746
BspMAI CTGCAG 2 cut(s) 123, 2944
BspMI ACCTGC 1 cut(s) 390
BspPI GGATC 3 cut(s) 1640, 1789, 2744
BspQI GCTCTTC 1 cut(s) 1946
BspT104I TTCGAA 3 cut(s) 531, 689, 3389
BspT107I GGYRCC 6 cut(s) 239, 326, 829, 1047, 2692, 3195
BspTI CTTAAG 3 cut(s) 1061, 1124, 3209
BspTNI GGTCTC 1 cut(s) 933
BsrDI GCAATG 1 cut(s) 2760
BsrFI RCCGGY 2 cut(s) 826, 3542
BsrGI TGTACA 1 cut(s) 735
BsrI ACTGG 4 cut(s) 337, 2451, 2506, 3186
BssAI RCCGGY 2 cut(s) 826, 3542
BssMI GATC 7 cut(s) 699, 1057, 1632, 1781, 2743, 2749, 3205
BssSI CACGAG 2 cut(s) 2112, 2517
BssT1I CCWWGG 5 cut(s) 1674, 1990, 2395, 2415, 3662
Bst2BI CACGAG 2 cut(s) 2112, 2517
Bst2UI CCWGG 5 cut(s) 346, 438, 1161, 2539, 3316
Bst4CI ACNGT 8 cut(s) 657, 742, 979, 1030, 1936, 2466, 3078, 3426
BstAFI CTTAAG 3 cut(s) 1061, 1124, 3209
BstAUI TGTACA 1 cut(s) 735
BstBAI YACGTR 2 cut(s) 368, 3296
BstBI TTCGAA 3 cut(s) 531, 689, 3389
BstDSI CCRYGG 5 cut(s) 322, 923, 1674, 1990, 2985
BstFNI CGCG 2 cut(s) 374, 456
BstH2I RGCGCY 4 cut(s) 127, 417, 2344, 2846
BstHHI GCGC 8 cut(s) 126, 376, 416, 433, 456, 2343, 2845, 3157
BstKTI GATC 7 cut(s) 702, 1060, 1635, 1784, 2746, 2752, 3208
BstMAI GTCTC 4 cut(s) 774, 911, 933, 3553
BstMBI GATC 7 cut(s) 699, 1057, 1632, 1781, 2743, 2749, 3205
BstMCI CGRYCG 2 cut(s) 322, 448
BstNI CCWGG 5 cut(s) 346, 438, 1161, 2539, 3316
BstNSI RCATGY 1 cut(s) 875
BstSCI CCNGG 5 cut(s) 344, 436, 1159, 2537, 3314
BstSFI CTRYAG 3 cut(s) 119, 957, 2940
BstSLI GKGCMC 3 cut(s) 363, 834, 2106
BstUI CGCG 2 cut(s) 374, 456
BstV2I GAAGAC 2 cut(s) 2717, 3128
BstX2I RGATCY 1 cut(s) 1781
BstXI CCANNNNNNTGG 3 cut(s) 1164, 2689, 3300
BstYI RGATCY 1 cut(s) 1781
BstZI CGGCCG 2 cut(s) 319, 445
BtgI CCRYGG 5 cut(s) 322, 923, 1674, 1990, 2985
BtsI GCAGTG 2 cut(s) 1464, 2838
BtsIMutI CAGTG 6 cut(s) 330, 738, 1464, 2250, 2462, 2838
BveI ACCTGC 1 cut(s) 390
CaiI CAGNNNCTG 3 cut(s) 1784, 3091, 3181
CciI TCATGA 1 cut(s) 2746
CfoI GCGC 8 cut(s) 126, 376, 416, 433, 456, 2343, 2845, 3157
Cfr10I RCCGGY 2 cut(s) 826, 3542
Cfr13I GGNCC 6 cut(s) 359, 360, 886, 1036, 1585, 2898
CseI GACGC 2 cut(s) 2667, 3295
CsiI ACCWGGT 2 cut(s) 344, 1159
CspAI ACCGGT 1 cut(s) 826
CspCI CAANNNNNGTGG 2 cut(s) 2967, 3002
DpnI GATC 7 cut(s) 701, 1059, 1634, 1783, 2745, 2751, 3207
DpnII GATC 7 cut(s) 699, 1057, 1632, 1781, 2743, 2749, 3205
DraI TTTAAA 1 cut(s) 2179
DrdI GACNNNNNNGTC 1 cut(s) 925
DriI GACNNNNNGTC 1 cut(s) 787
DseDI GACNNNNNNGTC 1 cut(s) 925
EaeI YGGCCR 6 cut(s) 319, 396, 445, 1671, 2535, 3147
EagI CGGCCG 2 cut(s) 319, 445
Eam1105I GACNNNNNGTC 1 cut(s) 787
EciI GGCGGA 2 cut(s) 160, 578
EclXI CGGCCG 2 cut(s) 319, 445
Eco130I CCWWGG 5 cut(s) 1674, 1990, 2395, 2415, 3662
Eco147I AGGCCT 3 cut(s) 2423, 2639, 3380
Eco24I GRGCYC 3 cut(s) 318, 363, 3365
Eco31I GGTCTC 1 cut(s) 933
Eco32I GATATC 2 cut(s) 355, 2623
Eco47I GGWCC 4 cut(s) 886, 1036, 1585, 2898
Eco47III AGCGCT 1 cut(s) 2342
Eco52I CGGCCG 2 cut(s) 319, 445
Eco57I CTGAAG 6 cut(s) 743, 1782, 2073, 2175, 2459, 3030
Eco72I CACGTG 2 cut(s) 368, 3296
Eco88I CYCGRG 2 cut(s) 272, 2235
EcoO109I RGGNCCY 1 cut(s) 1585
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 5 cut(s) 344, 436, 1159, 2537, 3314
EcoRV GATATC 2 cut(s) 355, 2623
EcoT14I CCWWGG 5 cut(s) 1674, 1990, 2395, 2415, 3662
EcoT38I GRGCYC 3 cut(s) 318, 363, 3365
ErhI CCWWGG 5 cut(s) 1674, 1990, 2395, 2415, 3662
FalI AAGNNNNNCTT 6 cut(s) 1035, 1067, 2907, 2939, 3183, 3215
FaqI GGGAC 6 cut(s) 242, 1506, 2008, 2637, 2911, 3576
FauI CCCGC 5 cut(s) 259, 275, 370, 449, 2113
FauNDI CATATG 1 cut(s) 1958
FbaI TGATCA 1 cut(s) 2743
FriOI GRGCYC 3 cut(s) 318, 363, 3365
FspBI CTAG 9 cut(s) 1080, 1113, 1215, 1998, 2214, 2384, 2811, 2840, 3228
GlaI GCGC 8 cut(s) 125, 375, 415, 432, 455, 2342, 2844, 3156
GsaI CCCAGC 3 cut(s) 1200, 2097, 3336
GsuI CTGGAG 4 cut(s) 1205, 2434, 3203, 3341
HaeII RGCGCY 4 cut(s) 127, 417, 2344, 2846
HapII CCGG 4 cut(s) 770, 827, 938, 3543
HgaI GACGC 2 cut(s) 2667, 3295
HhaI GCGC 8 cut(s) 126, 376, 416, 433, 456, 2343, 2845, 3157
Hin6I GCGC 8 cut(s) 124, 374, 414, 431, 454, 2341, 2843, 3155
HinP1I GCGC 8 cut(s) 124, 374, 414, 431, 454, 2341, 2843, 3155
HincII GTYRAC 1 cut(s) 2803
HindII GTYRAC 1 cut(s) 2803
HindIII AAGCTT 1 cut(s) 2130
HpaII CCGG 4 cut(s) 770, 827, 938, 3543
HphI GGTGA 7 cut(s) 148, 331, 974, 1360, 2044, 2969, 3557
Hpy166II GTNNAC 4 cut(s) 738, 1036, 2702, 2803
Hpy8I GTNNAC 4 cut(s) 738, 1036, 2702, 2803
Hpy99I CGWCG 3 cut(s) 470, 793, 3289
HpyCH4III ACNGT 8 cut(s) 657, 742, 979, 1030, 1936, 2466, 3078, 3426
HpyCH4IV ACGT 3 cut(s) 367, 3295, 3600
HpySE526I ACGT 3 cut(s) 367, 3295, 3600
HspAI GCGC 8 cut(s) 124, 374, 414, 431, 454, 2341, 2843, 3155
KpnI GGTACC 3 cut(s) 1051, 2696, 3199
Ksp22I TGATCA 1 cut(s) 2743
Kzo9I GATC 7 cut(s) 699, 1057, 1632, 1781, 2743, 2749, 3205
LguI GCTCTTC 1 cut(s) 1946
MabI ACCWGGT 2 cut(s) 344, 1159
MaeI CTAG 9 cut(s) 1080, 1113, 1215, 1998, 2214, 2384, 2811, 2840, 3228
MaeII ACGT 3 cut(s) 367, 3295, 3600
MaeIII GTNAC 4 cut(s) 874, 940, 2032, 2833
MalI GATC 7 cut(s) 701, 1059, 1634, 1783, 2745, 2751, 3207
MboI GATC 7 cut(s) 699, 1057, 1632, 1781, 2743, 2749, 3205
MfeI CAATTG 3 cut(s) 1220, 1818, 2277
MflI RGATCY 1 cut(s) 1781
MhlI GDGCHC 5 cut(s) 318, 363, 834, 2106, 3365
MlsI TGGCCA 1 cut(s) 2537
MluNI TGGCCA 1 cut(s) 2537
MlyI GAGTC 4 cut(s) 161, 620, 913, 3194
MmeI TCCRAC 6 cut(s) 189, 207, 1145, 1629, 3281, 3308
Mox20I TGGCCA 1 cut(s) 2537
MroXI GAANNNNTTC 5 cut(s) 809, 1428, 2342, 3125, 3498
MscI TGGCCA 1 cut(s) 2537
MslI CAYNNNNRTG 3 cut(s) 1673, 2687, 3294
Msp20I TGGCCA 1 cut(s) 2537
MspA1I CMGCKG 3 cut(s) 2108, 3062, 3152
MspCI CTTAAG 3 cut(s) 1061, 1124, 3209
MspI CCGG 4 cut(s) 770, 827, 938, 3543
MspR9I CCNGG 5 cut(s) 346, 438, 1161, 2539, 3316
MunI CAATTG 3 cut(s) 1220, 1818, 2277
Mva1269I GAATGC 2 cut(s) 1883, 2223
MvaI CCWGG 5 cut(s) 346, 438, 1161, 2539, 3316
MvnI CGCG 2 cut(s) 374, 456
NcoI CCATGG 2 cut(s) 1674, 1990
NdeI CATATG 1 cut(s) 1958
NdeII GATC 7 cut(s) 699, 1057, 1632, 1781, 2743, 2749, 3205
NmeAIII GCCGAG 2 cut(s) 297, 473
NmuCI GTSAC 2 cut(s) 2032, 2833
NspI RCATGY 1 cut(s) 875
NspV TTCGAA 3 cut(s) 531, 689, 3389
OliI CACNNNNGTG 1 cut(s) 3294
PaeR7I CTCGAG 1 cut(s) 272
PagI TCATGA 1 cut(s) 2746
PceI AGGCCT 3 cut(s) 2423, 2639, 3380
PciSI GCTCTTC 1 cut(s) 1946
PcsI WCGNNNNNNNCGW 1 cut(s) 920
PctI GAATGC 2 cut(s) 1883, 2223
PdmI GAANNNNTTC 5 cut(s) 809, 1428, 2342, 3125, 3498
PflMI CCANNNNNTGG 2 cut(s) 2852, 2954
PinAI ACCGGT 1 cut(s) 826
PleI GAGTC 4 cut(s) 161, 620, 913, 3193
PmaCI CACGTG 2 cut(s) 368, 3296
PmlI CACGTG 2 cut(s) 368, 3296
PpsI GAGTC 4 cut(s) 161, 620, 913, 3193
Ppu21I YACGTR 2 cut(s) 368, 3296
PpuMI RGGWCCY 1 cut(s) 1585
PshBI ATTAAT 1 cut(s) 2304
PsiI TTATAA 1 cut(s) 2358
Psp5II RGGWCCY 1 cut(s) 1585
Psp6I CCWGG 5 cut(s) 344, 436, 1159, 2537, 3314
PspCI CACGTG 2 cut(s) 368, 3296
PspFI CCCAGC 3 cut(s) 1196, 2093, 3332
PspGI CCWGG 5 cut(s) 344, 436, 1159, 2537, 3314
PspOMI GGGCCC 1 cut(s) 359
PspPI GGNCC 6 cut(s) 359, 360, 886, 1036, 1585, 2898
PspPPI RGGWCCY 1 cut(s) 1585
PspXI VCTCGAGB 1 cut(s) 272
PstI CTGCAG 2 cut(s) 123, 2944
PstNI CAGNNNCTG 3 cut(s) 1784, 3091, 3181
PsuI RGATCY 1 cut(s) 1781
PvuII CAGCTG 1 cut(s) 3062
RseI CAYNNNNRTG 3 cut(s) 1673, 2687, 3294
SapI GCTCTTC 1 cut(s) 1946
Sau3AI GATC 7 cut(s) 699, 1057, 1632, 1781, 2743, 2749, 3205
Sau96I GGNCC 6 cut(s) 359, 360, 886, 1036, 1585, 2898
ScaI AGTACT 1 cut(s) 2444
SchI GAGTC 4 cut(s) 161, 620, 913, 3194
ScrFI CCNGG 5 cut(s) 346, 438, 1161, 2539, 3316
SduI GDGCHC 5 cut(s) 318, 363, 834, 2106, 3365
SexAI ACCWGGT 2 cut(s) 344, 1159
SfcI CTRYAG 3 cut(s) 119, 957, 2940
Sfr274I CTCGAG 1 cut(s) 272
SfuI TTCGAA 3 cut(s) 531, 689, 3389
SinI GGWCC 4 cut(s) 886, 1036, 1585, 2898
SlaI CTCGAG 1 cut(s) 272
SmiMI CAYNNNNRTG 3 cut(s) 1673, 2687, 3294
SmlI CTYRAG 5 cut(s) 272, 1061, 1124, 2732, 3209
SmoI CTYRAG 5 cut(s) 272, 1061, 1124, 2732, 3209
SpeI ACTAGT 2 cut(s) 1079, 3227
SseBI AGGCCT 3 cut(s) 2423, 2639, 3380
SspMI CTAG 9 cut(s) 1080, 1113, 1215, 1998, 2214, 2384, 2811, 2840, 3228
StuI AGGCCT 3 cut(s) 2423, 2639, 3380
StyD4I CCNGG 5 cut(s) 344, 436, 1159, 2537, 3314
StyI CCWWGG 5 cut(s) 1674, 1990, 2395, 2415, 3662
TaaI ACNGT 8 cut(s) 657, 742, 979, 1030, 1936, 2466, 3078, 3426
TaiI ACGT 3 cut(s) 370, 3298, 3603
TaqII GACCGA 1 cut(s) 2915
TatI WGTACW 4 cut(s) 678, 735, 2442, 2920
TauI GCSGC 6 cut(s) 240, 374, 436, 1175, 1973, 3152
TscAI CASTG 6 cut(s) 337, 745, 1464, 2257, 2469, 2838
TseFI GTSAC 2 cut(s) 2032, 2833
Tsp45I GTSAC 2 cut(s) 2032, 2833
TspGWI ACGGA 5 cut(s) 719, 912, 929, 959, 2722
TspRI CASTG 6 cut(s) 337, 745, 1464, 2257, 2469, 2838
Van91I CCANNNNNTGG 2 cut(s) 2852, 2954
Vha464I CTTAAG 3 cut(s) 1061, 1124, 3209
VpaK11BI GGWCC 4 cut(s) 886, 1036, 1585, 2898
VspI ATTAAT 1 cut(s) 2304
XapI RAATTY 5 cut(s) 97, 527, 2160, 2186, 2879
XceI RCATGY 1 cut(s) 875
XcmI CCANNNNNNNNNTGG 1 cut(s) 3322
XhoI CTCGAG 1 cut(s) 272
XmnI GAANNNNTTC 5 cut(s) 809, 1428, 2342, 3125, 3498
XspI CTAG 9 cut(s) 1080, 1113, 1215, 1998, 2214, 2384, 2811, 2840, 3228
ZrmI AGTACT 1 cut(s) 2444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.